Wall clock time and date at job start Tue Mar 31 2020 13:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42902 * 114.00324 * 2 1 4 4 C 1.50694 * 109.47558 * 179.97438 * 3 2 1 5 5 N 1.29937 * 125.37812 * 89.97538 * 4 3 2 6 6 C 1.36064 * 108.47422 * 180.02562 * 5 4 3 7 7 C 1.47421 * 126.44537 * 180.26203 * 6 5 4 8 8 O 1.21607 * 120.00410 * 179.68905 * 7 6 5 9 9 N 1.34778 * 119.99860 * 359.68780 * 7 6 5 10 10 C 1.47282 * 136.54726 * 0.02562 * 9 7 6 11 11 C 1.54078 * 87.61000 * 151.36488 * 10 9 7 12 12 H 1.09000 * 115.04939 * 142.50503 * 11 10 9 13 13 C 1.53067 * 111.39246 * 273.97328 * 11 10 9 14 14 C 1.53147 * 109.21455 * 142.39562 * 13 11 10 15 15 N 1.46539 * 108.25168 * 301.59419 * 14 13 11 16 16 C 1.36936 * 119.73676 * 236.39350 * 15 14 13 17 17 H 1.08002 * 119.99882 * 25.16889 * 16 15 14 18 18 C 1.38813 * 120.00444 * 205.16343 * 16 15 14 19 19 N 1.31622 * 119.99377 * 14.52239 * 18 16 15 20 20 Si 1.86796 * 120.00367 * 194.52489 * 18 16 15 21 21 H 1.48501 * 109.47093 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47241 * 119.99868 * 20 18 16 23 23 H 1.48495 * 109.47272 * 239.99986 * 20 18 16 24 24 C 1.45700 * 120.52461 * 56.42007 * 15 14 13 25 25 C 1.46469 * 136.53974 * 179.62514 * 9 7 6 26 26 H 1.09000 * 111.44199 * 96.39171 * 25 9 7 27 27 C 1.36084 * 107.10737 * 0.02562 * 6 5 4 28 28 O 1.34056 * 125.38020 * 269.97789 * 4 3 2 29 29 H 1.09001 * 109.46657 * 60.00474 * 1 2 3 30 30 H 1.08998 * 109.46967 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47273 * 300.00118 * 1 2 3 32 32 H 1.09001 * 109.46541 * 59.99500 * 3 2 1 33 33 H 1.08995 * 109.47015 * 300.00307 * 3 2 1 34 34 H 1.08995 * 113.53289 * 266.04934 * 10 9 7 35 35 H 1.09002 * 113.52591 * 36.61083 * 10 9 7 36 36 H 1.08996 * 109.51616 * 262.31878 * 13 11 10 37 37 H 1.09003 * 109.51319 * 22.42502 * 13 11 10 38 38 H 1.09005 * 109.70755 * 61.28050 * 14 13 11 39 39 H 1.08992 * 109.71006 * 181.85662 * 14 13 11 40 40 H 0.97007 * 119.99349 * 179.97438 * 19 18 16 41 41 H 1.08996 * 108.79120 * 80.89651 * 24 15 14 42 42 H 1.09000 * 108.78993 * 199.10993 * 24 15 14 43 43 H 1.07998 * 126.52878 * 180.02562 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2629 1.1264 -1.0585 6 6 5.5605 1.0233 -0.6623 7 6 6.7403 0.9346 -1.5418 8 8 7.8535 0.8513 -1.0594 9 7 6.5851 0.9458 -2.8806 10 6 5.4587 1.0304 -3.8257 11 6 6.4279 1.6968 -4.8210 12 1 6.2837 1.4156 -5.8642 13 6 6.5099 3.2083 -4.5935 14 6 7.9523 3.6735 -4.8134 15 7 8.8172 2.9423 -3.8836 16 6 9.6164 3.6338 -3.0128 17 1 9.3462 4.6349 -2.7106 18 6 10.7738 3.0483 -2.5184 19 7 11.2580 1.9647 -3.0877 20 14 11.6441 3.7978 -1.0453 21 1 10.9030 5.0025 -0.5928 22 1 11.6945 2.8049 0.0579 23 1 13.0262 4.1815 -1.4293 24 6 8.8341 1.4855 -3.8786 25 6 7.4612 0.8864 -4.0529 26 1 7.5405 -0.1294 -4.4400 27 6 5.5647 1.0229 0.6985 28 8 4.2859 1.1258 1.0940 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6886 1.8463 0.8900 33 1 1.6887 1.8463 -0.8899 34 1 5.0950 0.0580 -4.1574 35 1 4.6574 1.6887 -3.4899 36 1 5.8515 3.7186 -5.2964 37 1 6.2033 3.4401 -3.5735 38 1 8.2542 3.4626 -5.8394 39 1 8.0267 4.7438 -4.6213 40 1 12.0670 1.5557 -2.7424 41 1 9.4758 1.1390 -4.6886 42 1 9.2514 1.1424 -2.9319 43 1 6.4318 0.9543 1.3386 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084747781.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:47 Heat of formation + Delta-G solvation = -1.563429 kcal Electronic energy + Delta-G solvation = -28075.249330 eV Core-core repulsion = 24124.265420 eV Total energy + Delta-G solvation = -3950.983910 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.56591 -41.91021 -39.25755 -38.89134 -37.07098 -35.99970 -33.98225 -32.59138 -31.94266 -30.67262 -28.80126 -28.59025 -26.63305 -25.74775 -25.45205 -23.98188 -22.61077 -22.57181 -21.32513 -19.74094 -19.17948 -18.28817 -18.10024 -17.43748 -17.34157 -17.06657 -16.92323 -16.62741 -16.52862 -16.15879 -15.62174 -15.11318 -15.05110 -14.87289 -14.55317 -14.28381 -14.04243 -13.85969 -13.53865 -13.28644 -13.16705 -12.79966 -12.68818 -12.60449 -12.41628 -12.28895 -12.18616 -12.02915 -11.96537 -11.76534 -11.49941 -11.17426 -10.82775 -10.77713 -10.45427 -10.30130 -9.56521 -8.66690 -7.84016 -5.27457 -0.03844 0.77260 1.36490 1.38365 1.42421 1.49038 1.84151 2.24561 2.49490 2.52760 3.18261 3.29943 3.41529 3.49437 3.68383 3.72806 3.94535 4.10301 4.17281 4.22467 4.39191 4.44025 4.45725 4.55463 4.57231 4.58302 4.64320 4.68555 4.75061 4.77775 4.92406 4.93287 4.99815 5.06334 5.13033 5.31183 5.41654 5.57324 5.69003 5.82249 6.03256 6.30911 6.41122 6.84106 7.14398 7.20157 7.96668 8.35928 9.20766 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016213 B = 0.004026 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.547034 B = 6953.849487 C = 7978.172015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.416 6.416 3 C 0.164 3.836 4 C 0.190 3.810 5 N -0.447 5.447 6 C -0.085 4.085 7 C 0.611 3.389 8 O -0.572 6.572 9 N -0.622 5.622 10 C 0.120 3.880 11 C -0.100 4.100 12 H 0.137 0.863 13 C -0.103 4.103 14 C 0.141 3.859 15 N -0.604 5.604 16 C -0.256 4.256 17 H 0.059 0.941 18 C -0.046 4.046 19 N -0.932 5.932 20 Si 0.957 3.043 21 H -0.268 1.268 22 H -0.300 1.300 23 H -0.285 1.285 24 C 0.180 3.820 25 C 0.109 3.891 26 H 0.092 0.908 27 C 0.027 3.973 28 O -0.187 6.187 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.063 0.937 32 H 0.112 0.888 33 H 0.117 0.883 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.035 0.965 38 H 0.030 0.970 39 H 0.051 0.949 40 H 0.244 0.756 41 H 0.000 1.000 42 H 0.054 0.946 43 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.093 -2.189 2.378 26.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.335 6.335 3 C 0.087 3.913 4 C -0.020 4.020 5 N -0.178 5.178 6 C -0.205 4.205 7 C 0.401 3.599 8 O -0.452 6.452 9 N -0.355 5.355 10 C -0.001 4.001 11 C -0.119 4.119 12 H 0.154 0.846 13 C -0.142 4.142 14 C 0.016 3.984 15 N -0.327 5.327 16 C -0.386 4.386 17 H 0.076 0.924 18 C -0.241 4.241 19 N -0.579 5.579 20 Si 0.786 3.214 21 H -0.193 1.193 22 H -0.228 1.228 23 H -0.211 1.211 24 C 0.054 3.946 25 C 0.005 3.995 26 H 0.109 0.891 27 C -0.047 4.047 28 O -0.073 6.073 29 H 0.080 0.920 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.122 0.878 35 H 0.108 0.892 36 H 0.119 0.881 37 H 0.054 0.946 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.018 0.982 42 H 0.072 0.928 43 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -25.518 -2.460 2.283 25.737 hybrid contribution 1.594 0.133 1.677 2.317 sum -23.923 -2.327 3.960 24.360 Atomic orbital electron populations 1.23038 0.77303 1.04416 1.02036 1.87914 1.22996 1.26652 1.95920 1.20825 0.77929 0.86523 1.06000 1.26621 0.96872 1.00481 0.78000 1.70717 1.00294 1.16235 1.30584 1.21664 0.91937 1.13385 0.93475 1.16548 0.86088 0.76716 0.80581 1.90873 1.26339 1.52986 1.74987 1.49308 1.13522 1.70098 1.02573 1.23415 0.90344 1.01466 0.84893 1.22763 0.93982 0.95250 0.99923 0.84571 1.21707 0.97525 0.94091 1.00855 1.20958 0.90135 0.95166 0.92171 1.43732 1.47327 1.01270 1.40360 1.19403 1.00577 0.99321 1.19309 0.92359 1.25633 0.97470 0.98982 1.02054 1.70185 1.22368 1.23813 1.41520 0.85352 0.78320 0.77658 0.80047 1.19260 1.22755 1.21121 1.19785 0.91286 0.83566 0.99998 1.22613 0.93890 0.99950 0.83048 0.89062 1.25650 0.85503 0.98216 0.95339 1.84397 1.16593 1.68520 1.37764 0.91961 0.88522 0.91804 0.87001 0.86522 0.87845 0.89223 0.88126 0.94616 0.95159 0.93041 0.94652 0.98200 0.92762 0.73540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.42 -7.06 10.69 -148.98 -1.59 -8.65 16 3 C 0.16 2.34 6.56 71.23 0.47 2.81 16 4 C 0.19 4.62 7.93 88.39 0.70 5.32 16 5 N -0.45 -13.46 9.88 -293.04 -2.90 -16.36 16 6 C -0.09 -3.03 6.97 40.41 0.28 -2.75 16 7 C 0.61 27.06 8.00 86.66 0.69 27.76 16 8 O -0.57 -30.92 16.13 -4.05 -0.07 -30.98 16 9 N -0.62 -24.51 3.34 -871.32 -2.91 -27.42 16 10 C 0.12 3.36 7.17 81.09 0.58 3.94 16 11 C -0.10 -2.94 4.57 -10.69 -0.05 -2.99 16 12 H 0.14 2.92 8.14 -2.39 -0.02 2.90 16 13 C -0.10 -3.32 5.69 30.67 0.17 -3.15 16 14 C 0.14 5.86 6.46 86.42 0.56 6.42 16 15 N -0.60 -32.34 3.03 -707.81 -2.14 -34.48 16 16 C -0.26 -15.36 9.53 84.03 0.80 -14.56 16 17 H 0.06 3.45 7.83 -2.91 -0.02 3.43 16 18 C -0.05 -2.85 4.94 84.86 0.42 -2.43 16 19 N -0.93 -60.18 10.94 21.65 0.24 -59.94 16 20 Si 0.96 50.20 29.58 68.60 2.03 52.23 16 21 H -0.27 -13.34 7.11 99.48 0.71 -12.63 16 22 H -0.30 -16.18 7.11 99.48 0.71 -15.47 16 23 H -0.28 -14.40 7.11 99.48 0.71 -13.70 16 24 C 0.18 9.53 4.59 85.82 0.39 9.93 16 25 C 0.11 4.33 3.98 38.49 0.15 4.49 16 26 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 27 C 0.03 0.80 11.94 67.32 0.80 1.61 16 28 O -0.19 -4.79 10.73 0.38 0.00 -4.79 16 29 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.11 0.91 8.14 -2.39 -0.02 0.90 16 33 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 35 H 0.09 2.40 7.34 -2.39 -0.02 2.39 16 36 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 37 H 0.03 1.33 7.68 -2.39 -0.02 1.32 16 38 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.05 2.13 7.87 -2.39 -0.02 2.11 16 40 H 0.24 15.40 8.31 -92.70 -0.77 14.63 16 41 H 0.00 0.01 7.99 -2.39 -0.02 -0.01 16 42 H 0.05 3.43 4.95 -2.39 -0.01 3.42 16 43 H 0.25 6.23 8.06 -2.91 -0.02 6.20 16 Total: -1.00 -86.44 356.45 0.91 -85.53 By element: Atomic # 1 Polarization: 5.99 SS G_CDS: 1.02 Total: 7.01 kcal Atomic # 6 Polarization: 30.63 SS G_CDS: 7.23 Total: 37.86 kcal Atomic # 7 Polarization: -130.48 SS G_CDS: -7.71 Total: -138.20 kcal Atomic # 8 Polarization: -42.77 SS G_CDS: -1.65 Total: -44.42 kcal Atomic # 14 Polarization: 50.20 SS G_CDS: 2.03 Total: 52.23 kcal Total: -86.44 0.91 -85.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084747781.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.963 kcal (2) G-P(sol) polarization free energy of solvation -86.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds