Wall clock time and date at job start Tue Mar 31 2020 13:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 113.99748 * 2 1 4 4 C 1.50704 * 109.47133 * 180.02562 * 3 2 1 5 5 N 1.30005 * 127.33997 * 89.97265 * 4 3 2 6 6 O 1.20660 * 112.30463 * 180.02562 * 5 4 3 7 7 C 1.33486 * 113.15654 * 359.97438 * 6 5 4 8 8 C 1.37360 * 106.34193 * 359.97438 * 7 6 5 9 9 C 1.47399 * 128.56879 * 179.97438 * 8 7 6 10 10 O 1.21601 * 120.00523 * 180.02562 * 9 8 7 11 11 N 1.34779 * 119.99580 * 0.02562 * 9 8 7 12 12 C 1.47293 * 136.54569 * 359.97438 * 11 9 8 13 13 C 1.54076 * 87.60507 * 151.36759 * 12 11 9 14 14 H 1.09002 * 115.04732 * 142.50323 * 13 12 11 15 15 C 1.53067 * 111.39582 * 273.97230 * 13 12 11 16 16 C 1.53143 * 109.21803 * 142.40096 * 15 13 12 17 17 N 1.46544 * 108.24903 * 301.59182 * 16 15 13 18 18 C 1.36936 * 119.73871 * 236.44215 * 17 16 15 19 19 H 1.07994 * 120.00225 * 25.18604 * 18 17 16 20 20 C 1.38817 * 119.99806 * 205.18755 * 18 17 16 21 21 N 1.31613 * 120.00554 * 14.47172 * 20 18 17 22 22 Si 1.86805 * 119.99751 * 194.47825 * 20 18 17 23 23 H 1.48500 * 109.47354 * 59.99265 * 22 20 18 24 24 H 1.48500 * 109.47112 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46863 * 299.99619 * 22 20 18 26 26 C 1.45706 * 120.52265 * 56.42296 * 17 16 15 27 27 C 1.46472 * 136.54089 * 179.62818 * 11 9 8 28 28 H 1.08994 * 111.43936 * 96.38417 * 27 11 9 29 29 H 1.09002 * 109.47255 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47453 * 299.99580 * 1 2 3 31 31 H 1.08999 * 109.47468 * 59.99861 * 1 2 3 32 32 H 1.08997 * 109.47668 * 60.00040 * 3 2 1 33 33 H 1.09000 * 109.47375 * 300.00069 * 3 2 1 34 34 H 1.07995 * 126.83129 * 180.02562 * 7 6 5 35 35 H 1.08993 * 113.52898 * 266.05415 * 12 11 9 36 36 H 1.09000 * 113.52442 * 36.68500 * 12 11 9 37 37 H 1.08993 * 109.51464 * 262.32527 * 15 13 12 38 38 H 1.09006 * 109.51205 * 22.48191 * 15 13 12 39 39 H 1.08998 * 109.70934 * 61.27591 * 16 15 13 40 40 H 1.08991 * 109.71063 * 181.90650 * 16 15 13 41 41 H 0.96996 * 120.00226 * 180.02562 * 21 20 18 42 42 H 1.08996 * 108.78865 * 80.89812 * 26 17 16 43 43 H 1.08994 * 108.78464 * 199.11313 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2981 1.1240 -1.0346 6 8 5.4598 1.0316 -0.7221 7 6 5.6484 1.0173 0.5993 8 6 4.4024 1.1174 1.1687 9 6 4.0449 1.1463 2.5984 10 8 2.8793 1.2394 2.9320 11 7 5.0101 1.0695 3.5359 12 6 6.4783 0.9518 3.5520 13 6 6.4585 1.6942 4.9019 14 1 7.1885 1.3442 5.6318 15 6 6.4599 3.2121 4.7045 16 6 5.5619 3.8589 5.7630 17 7 4.2141 3.3003 5.6250 18 6 3.1496 4.1372 5.4213 19 1 3.3027 5.1051 4.9674 20 6 1.8735 3.7413 5.7982 21 7 1.7142 2.7077 6.5972 22 14 0.3824 4.6758 5.1713 23 1 0.3516 4.6208 3.6876 24 1 -0.8536 4.0577 5.7149 25 1 0.4640 6.0914 5.6126 26 6 3.9980 1.8615 5.7023 27 6 5.0735 1.0713 4.9993 28 1 5.1182 0.0577 5.3974 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6885 1.8464 0.8899 33 1 1.6885 1.8464 -0.8900 34 1 6.5929 0.9427 1.1177 35 1 6.8316 -0.0766 3.6260 36 1 6.9683 1.5111 2.7549 37 1 7.4763 3.5918 4.8080 38 1 6.0808 3.4503 3.7106 39 1 5.9501 3.6404 6.7578 40 1 5.5302 4.9374 5.6089 41 1 0.8226 2.4309 6.8602 42 1 3.9719 1.5663 6.7512 43 1 3.0347 1.6264 5.2497 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084770443.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:15 Heat of formation + Delta-G solvation = 66.219516 kcal Electronic energy + Delta-G solvation = -28716.943619 eV Core-core repulsion = 24768.898997 eV Total energy + Delta-G solvation = -3948.044621 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.94376 -40.62060 -38.01206 -37.49009 -35.27563 -33.91240 -32.43414 -31.96331 -30.19141 -29.12227 -28.17038 -27.05293 -25.72512 -24.48683 -23.88389 -22.78694 -21.44877 -20.87086 -20.15023 -18.27093 -17.80543 -17.55477 -16.88794 -16.23288 -16.19163 -15.80253 -15.66041 -15.39959 -14.97415 -14.30227 -14.13458 -13.74688 -13.52691 -13.26118 -13.19793 -12.81141 -12.47071 -12.44786 -12.30755 -11.96262 -11.54681 -11.51639 -11.42760 -11.12012 -10.70056 -10.66713 -10.53203 -10.23171 -10.15334 -9.94380 -9.80721 -9.78706 -9.68707 -9.62371 -9.09679 -8.32719 -8.22103 -6.61416 -5.67085 -3.08898 1.14691 1.66349 2.82824 3.21031 3.45486 3.51111 3.53542 3.58076 3.72895 4.16201 4.43110 4.54687 4.60524 4.69642 4.90252 5.10922 5.18154 5.21913 5.34613 5.38741 5.42158 5.43852 5.48598 5.56101 5.59561 5.66649 5.71262 5.82235 5.86415 6.08009 6.09274 6.26051 6.33546 6.46783 6.55035 6.75008 6.96000 7.08194 7.46067 7.74905 7.92090 8.11995 8.19222 8.55954 8.64138 9.34140 9.98304 10.45549 11.41216 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010297 B = 0.006224 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.581846 B = 4497.643686 C = 6378.388249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.383 6.383 3 C 0.141 3.859 4 C 0.065 3.935 5 N -0.343 5.343 6 O 0.101 5.899 7 C -0.026 4.026 8 C -0.214 4.214 9 C 0.617 3.383 10 O -0.497 6.497 11 N -0.628 5.628 12 C 0.086 3.914 13 C -0.110 4.110 14 H 0.095 0.905 15 C -0.117 4.117 16 C 0.148 3.852 17 N -0.585 5.585 18 C -0.253 4.253 19 H 0.061 0.939 20 C 0.012 3.988 21 N -0.904 5.904 22 Si 0.900 3.100 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.285 1.285 26 C 0.164 3.836 27 C 0.124 3.876 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.050 0.950 31 H 0.040 0.960 32 H 0.094 0.906 33 H 0.066 0.934 34 H 0.225 0.775 35 H 0.083 0.917 36 H 0.070 0.930 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.020 0.980 40 H 0.056 0.944 41 H 0.253 0.747 42 H 0.032 0.968 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.191 -5.403 -9.791 15.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.301 6.301 3 C 0.064 3.936 4 C -0.098 4.098 5 N -0.049 5.049 6 O 0.037 5.963 7 C -0.107 4.107 8 C -0.222 4.222 9 C 0.404 3.596 10 O -0.371 6.371 11 N -0.364 5.364 12 C -0.037 4.037 13 C -0.129 4.129 14 H 0.113 0.887 15 C -0.156 4.156 16 C 0.021 3.979 17 N -0.307 5.307 18 C -0.383 4.383 19 H 0.079 0.921 20 C -0.186 4.186 21 N -0.548 5.548 22 Si 0.731 3.269 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.212 1.212 26 C 0.038 3.962 27 C 0.021 3.979 28 H 0.092 0.908 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.059 0.941 32 H 0.111 0.889 33 H 0.084 0.916 34 H 0.241 0.759 35 H 0.101 0.899 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.078 0.922 39 H 0.038 0.962 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.050 0.950 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 9.065 -5.571 -11.018 15.317 hybrid contribution -0.887 0.494 0.439 1.106 sum 8.178 -5.077 -10.579 14.303 Atomic orbital electron populations 1.22761 0.80139 1.02920 1.00426 1.87870 1.20283 1.26419 1.95563 1.20595 0.84145 0.86083 1.02810 1.24339 0.97424 1.01248 0.86787 1.73622 0.89572 1.18098 1.23595 1.84544 1.21618 1.66687 1.23442 1.26590 1.00504 1.00030 0.83573 1.22526 0.92436 1.11247 0.95957 1.16068 0.84279 0.77626 0.81591 1.90881 1.17330 1.48132 1.80785 1.49236 1.06487 1.72522 1.08164 1.23513 0.81521 1.00190 0.98501 1.22694 0.97418 0.96803 0.96000 0.88660 1.21865 0.99418 0.92679 1.01677 1.20719 0.86310 0.96414 0.94413 1.43457 1.01801 1.01354 1.84102 1.19033 0.86236 0.99346 1.33667 0.92092 1.24902 0.98060 0.98239 0.97428 1.69981 1.21384 1.28366 1.35071 0.86406 0.82730 0.78955 0.78850 1.21115 1.21668 1.21173 1.20202 0.96662 0.82524 0.96788 1.22546 0.96541 0.99425 0.79400 0.90764 0.89428 0.93158 0.94100 0.88852 0.91554 0.75860 0.89915 0.91159 0.92546 0.92150 0.96209 0.92590 0.93728 0.95037 0.87696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 101.05 1.11 1.55 16 2 O -0.38 -6.49 10.69 -35.23 -0.38 -6.86 16 3 C 0.14 2.34 6.20 36.01 0.22 2.56 16 4 C 0.06 1.10 7.21 -79.77 -0.58 0.52 16 5 N -0.34 -5.38 12.01 34.78 0.42 -4.97 16 6 O 0.10 1.33 11.06 18.67 0.21 1.54 16 7 C -0.03 -0.31 11.51 30.41 0.35 0.04 16 8 C -0.21 -3.56 6.46 -102.89 -0.67 -4.22 16 9 C 0.62 12.28 8.00 -12.53 -0.10 12.18 16 10 O -0.50 -12.26 14.94 5.28 0.08 -12.18 16 11 N -0.63 -10.81 3.34 -189.29 -0.63 -11.44 16 12 C 0.09 0.99 6.67 -11.53 -0.08 0.92 16 13 C -0.11 -1.52 4.57 -90.45 -0.41 -1.93 16 14 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 15 C -0.12 -1.80 5.69 -26.62 -0.15 -1.96 16 16 C 0.15 2.94 6.46 -3.94 -0.03 2.91 16 17 N -0.58 -14.51 3.03 -175.05 -0.53 -15.04 16 18 C -0.25 -7.12 9.53 -15.06 -0.14 -7.26 16 19 H 0.06 1.70 7.83 -52.49 -0.41 1.29 16 20 C 0.01 0.36 4.94 -17.43 -0.09 0.27 16 21 N -0.90 -27.00 10.94 55.49 0.61 -26.39 16 22 Si 0.90 23.01 29.58 -169.99 -5.03 17.98 16 23 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 26 C 0.16 3.95 4.60 -5.55 -0.03 3.93 16 27 C 0.12 2.24 3.98 -77.93 -0.31 1.93 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 1.72 7.11 -51.93 -0.37 1.35 16 33 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.23 1.72 5.56 -52.49 -0.29 1.43 16 35 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.64 6.17 -51.93 -0.32 0.32 16 37 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.06 1.03 7.68 -51.93 -0.40 0.64 16 39 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 1.11 7.87 -51.93 -0.41 0.70 16 41 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 42 H 0.03 0.82 8.00 -51.93 -0.42 0.40 16 43 H 0.11 2.99 4.95 -51.93 -0.26 2.74 16 LS Contribution 350.48 15.07 5.28 5.28 Total: -1.00 -35.37 350.48 -6.67 -42.05 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -5.81 Total: -1.41 kcal Atomic # 6 Polarization: 12.34 SS G_CDS: -0.89 Total: 11.45 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: -0.14 Total: -57.84 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.09 Total: -17.50 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.03 Total: 17.98 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -35.37 -6.67 -42.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084770443.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.267 kcal (2) G-P(sol) polarization free energy of solvation -35.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds