Wall clock time and date at job start Tue Mar 31 2020 13:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42898 * 113.99748 * 2 1 4 4 C 1.50704 * 109.47133 * 180.02562 * 3 2 1 5 5 N 1.30005 * 127.33997 * 89.97265 * 4 3 2 6 6 O 1.20660 * 112.30463 * 180.02562 * 5 4 3 7 7 C 1.33486 * 113.15654 * 359.97438 * 6 5 4 8 8 C 1.37360 * 106.34193 * 359.97438 * 7 6 5 9 9 C 1.47399 * 128.56879 * 179.97438 * 8 7 6 10 10 O 1.21601 * 120.00523 * 180.02562 * 9 8 7 11 11 N 1.34779 * 119.99580 * 0.02562 * 9 8 7 12 12 C 1.47293 * 136.54569 * 359.97438 * 11 9 8 13 13 C 1.54076 * 87.60507 * 151.36759 * 12 11 9 14 14 H 1.09002 * 115.04732 * 142.50323 * 13 12 11 15 15 C 1.53067 * 111.39582 * 273.97230 * 13 12 11 16 16 C 1.53143 * 109.21803 * 142.40096 * 15 13 12 17 17 N 1.46544 * 108.24903 * 301.59182 * 16 15 13 18 18 C 1.36936 * 119.73871 * 236.44215 * 17 16 15 19 19 H 1.07994 * 120.00225 * 25.18604 * 18 17 16 20 20 C 1.38817 * 119.99806 * 205.18755 * 18 17 16 21 21 N 1.31613 * 120.00554 * 14.47172 * 20 18 17 22 22 Si 1.86805 * 119.99751 * 194.47825 * 20 18 17 23 23 H 1.48500 * 109.47354 * 59.99265 * 22 20 18 24 24 H 1.48500 * 109.47112 * 179.97438 * 22 20 18 25 25 H 1.48505 * 109.46863 * 299.99619 * 22 20 18 26 26 C 1.45706 * 120.52265 * 56.42296 * 17 16 15 27 27 C 1.46472 * 136.54089 * 179.62818 * 11 9 8 28 28 H 1.08994 * 111.43936 * 96.38417 * 27 11 9 29 29 H 1.09002 * 109.47255 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47453 * 299.99580 * 1 2 3 31 31 H 1.08999 * 109.47468 * 59.99861 * 1 2 3 32 32 H 1.08997 * 109.47668 * 60.00040 * 3 2 1 33 33 H 1.09000 * 109.47375 * 300.00069 * 3 2 1 34 34 H 1.07995 * 126.83129 * 180.02562 * 7 6 5 35 35 H 1.08993 * 113.52898 * 266.05415 * 12 11 9 36 36 H 1.09000 * 113.52442 * 36.68500 * 12 11 9 37 37 H 1.08993 * 109.51464 * 262.32527 * 15 13 12 38 38 H 1.09006 * 109.51205 * 22.48191 * 15 13 12 39 39 H 1.08998 * 109.70934 * 61.27591 * 16 15 13 40 40 H 1.08991 * 109.71063 * 181.90650 * 16 15 13 41 41 H 0.96996 * 120.00226 * 180.02562 * 21 20 18 42 42 H 1.08996 * 108.78865 * 80.89812 * 26 17 16 43 43 H 1.08994 * 108.78464 * 199.11313 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 7 4.2981 1.1240 -1.0346 6 8 5.4598 1.0316 -0.7221 7 6 5.6484 1.0173 0.5993 8 6 4.4024 1.1174 1.1687 9 6 4.0449 1.1463 2.5984 10 8 2.8793 1.2394 2.9320 11 7 5.0101 1.0695 3.5359 12 6 6.4783 0.9518 3.5520 13 6 6.4585 1.6942 4.9019 14 1 7.1885 1.3442 5.6318 15 6 6.4599 3.2121 4.7045 16 6 5.5619 3.8589 5.7630 17 7 4.2141 3.3003 5.6250 18 6 3.1496 4.1372 5.4213 19 1 3.3027 5.1051 4.9674 20 6 1.8735 3.7413 5.7982 21 7 1.7142 2.7077 6.5972 22 14 0.3824 4.6758 5.1713 23 1 0.3516 4.6208 3.6876 24 1 -0.8536 4.0577 5.7149 25 1 0.4640 6.0914 5.6126 26 6 3.9980 1.8615 5.7023 27 6 5.0735 1.0713 4.9993 28 1 5.1182 0.0577 5.3974 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.6885 1.8464 0.8899 33 1 1.6885 1.8464 -0.8900 34 1 6.5929 0.9427 1.1177 35 1 6.8316 -0.0766 3.6260 36 1 6.9683 1.5111 2.7549 37 1 7.4763 3.5918 4.8080 38 1 6.0808 3.4503 3.7106 39 1 5.9501 3.6404 6.7578 40 1 5.5302 4.9374 5.6089 41 1 0.8226 2.4309 6.8602 42 1 3.9719 1.5663 6.7512 43 1 3.0347 1.6264 5.2497 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084770443.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:14 Heat of formation + Delta-G solvation = 39.326051 kcal Electronic energy + Delta-G solvation = -28718.109807 eV Core-core repulsion = 24768.898997 eV Total energy + Delta-G solvation = -3949.210810 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -46.11510 -41.92728 -39.34813 -38.87183 -37.06150 -35.11863 -34.05806 -33.34570 -31.90844 -30.57644 -29.40051 -28.64019 -26.88501 -25.88482 -25.53557 -24.19065 -22.83960 -22.13584 -21.49073 -19.69623 -19.09797 -18.95449 -18.23135 -17.64794 -17.44337 -17.29569 -17.04676 -16.83140 -16.21047 -16.14416 -15.65724 -15.23763 -15.05303 -14.75251 -14.56736 -14.33562 -13.95432 -13.69615 -13.55406 -13.40942 -13.14146 -12.76865 -12.66754 -12.66227 -12.60252 -12.32471 -12.22901 -11.98566 -11.72111 -11.46145 -11.32449 -11.19811 -10.92086 -10.85890 -10.72498 -10.41038 -9.54656 -8.65564 -7.84733 -5.27368 0.06472 0.44012 1.33328 1.40277 1.43395 1.67087 2.10210 2.23988 2.47804 2.54680 2.98995 3.28605 3.30492 3.44664 3.58979 3.75171 3.75800 3.99374 4.02444 4.12056 4.23671 4.34433 4.37459 4.42091 4.52236 4.56650 4.61683 4.67112 4.68631 4.72535 4.79144 4.86234 4.97588 5.11075 5.16144 5.35697 5.45019 5.57407 5.73673 5.85595 5.90079 6.40894 6.88048 7.03387 7.20483 7.24640 7.98663 8.35878 9.19236 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.010297 B = 0.006224 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2718.581846 B = 4497.643686 C = 6378.388249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.405 6.405 3 C 0.143 3.857 4 C 0.037 3.963 5 N -0.350 5.350 6 O 0.120 5.880 7 C 0.027 3.973 8 C -0.253 4.253 9 C 0.607 3.393 10 O -0.570 6.570 11 N -0.633 5.633 12 C 0.098 3.902 13 C -0.097 4.097 14 H 0.138 0.862 15 C -0.106 4.106 16 C 0.137 3.863 17 N -0.602 5.602 18 C -0.254 4.254 19 H 0.058 0.942 20 C -0.043 4.043 21 N -0.931 5.931 22 Si 0.950 3.050 23 H -0.293 1.293 24 H -0.294 1.294 25 H -0.268 1.268 26 C 0.176 3.824 27 C 0.110 3.890 28 H 0.093 0.907 29 H 0.107 0.893 30 H 0.033 0.967 31 H 0.065 0.935 32 H 0.060 0.940 33 H 0.086 0.914 34 H 0.279 0.721 35 H 0.127 0.873 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.043 0.957 39 H 0.027 0.973 40 H 0.048 0.952 41 H 0.243 0.757 42 H -0.005 1.005 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.775 -5.883 -11.488 19.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.324 6.324 3 C 0.066 3.934 4 C -0.124 4.124 5 N -0.054 5.054 6 O 0.055 5.945 7 C -0.054 4.054 8 C -0.261 4.261 9 C 0.397 3.603 10 O -0.449 6.449 11 N -0.368 5.368 12 C -0.023 4.023 13 C -0.116 4.116 14 H 0.156 0.844 15 C -0.145 4.145 16 C 0.013 3.987 17 N -0.325 5.325 18 C -0.385 4.385 19 H 0.076 0.924 20 C -0.239 4.239 21 N -0.578 5.578 22 Si 0.780 3.220 23 H -0.220 1.220 24 H -0.220 1.220 25 H -0.193 1.193 26 C 0.050 3.950 27 C 0.006 3.994 28 H 0.110 0.890 29 H 0.126 0.874 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.294 0.706 35 H 0.145 0.855 36 H 0.126 0.874 37 H 0.122 0.878 38 H 0.062 0.938 39 H 0.045 0.955 40 H 0.067 0.933 41 H 0.052 0.948 42 H 0.013 0.987 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.728 -6.034 -12.728 19.669 hybrid contribution -2.218 0.668 1.013 2.528 sum 11.510 -5.366 -11.715 17.278 Atomic orbital electron populations 1.22969 0.78538 1.04407 1.00836 1.87825 1.22196 1.26751 1.95632 1.20485 0.84906 0.85959 1.02069 1.24468 0.97719 1.02555 0.87688 1.73613 0.90171 1.18319 1.23252 1.84537 1.20474 1.65490 1.24031 1.27328 1.00406 0.95199 0.82458 1.22271 0.94474 1.15140 0.94243 1.16571 0.83880 0.76708 0.83166 1.90849 1.20406 1.51589 1.82097 1.49391 1.09097 1.71127 1.07183 1.23852 0.77515 1.02928 0.97974 1.22727 0.94574 0.95598 0.98717 0.84429 1.21748 1.00408 0.93757 0.98559 1.20988 0.84686 0.96467 0.96610 1.43700 1.03066 1.01499 1.84253 1.19318 0.87601 0.99500 1.32075 0.92446 1.25555 1.00444 0.99480 0.98396 1.70150 1.20871 1.29977 1.36801 0.85595 0.80060 0.78778 0.77613 1.22008 1.22006 1.19349 1.19807 0.97012 0.83084 0.95096 1.22592 0.97156 0.99773 0.79916 0.88966 0.87445 0.94775 0.91613 0.92158 0.89562 0.70612 0.85524 0.87436 0.87776 0.93847 0.95473 0.93342 0.94752 0.98696 0.93039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 11.01 113.37 1.25 2.01 16 2 O -0.41 -14.33 10.69 -148.98 -1.59 -15.92 16 3 C 0.14 5.01 6.20 71.24 0.44 5.45 16 4 C 0.04 1.27 7.21 45.16 0.33 1.60 16 5 N -0.35 -10.33 12.01 -44.78 -0.54 -10.87 16 6 O 0.12 2.70 11.06 77.04 0.85 3.55 16 7 C 0.03 0.53 11.51 67.61 0.78 1.31 16 8 C -0.25 -8.09 6.46 -18.74 -0.12 -8.21 16 9 C 0.61 24.44 8.00 86.66 0.69 25.14 16 10 O -0.57 -30.28 14.94 -4.03 -0.06 -30.34 16 11 N -0.63 -20.50 3.34 -871.05 -2.91 -23.41 16 12 C 0.10 1.61 6.67 81.10 0.54 2.15 16 13 C -0.10 -2.18 4.57 -10.68 -0.05 -2.23 16 14 H 0.14 2.08 8.14 -2.39 -0.02 2.06 16 15 C -0.11 -2.81 5.69 30.66 0.17 -2.63 16 16 C 0.14 5.29 6.46 86.42 0.56 5.85 16 17 N -0.60 -30.71 3.03 -707.75 -2.14 -32.86 16 18 C -0.25 -14.91 9.53 84.03 0.80 -14.11 16 19 H 0.06 3.32 7.83 -2.91 -0.02 3.30 16 20 C -0.04 -2.64 4.94 84.86 0.42 -2.22 16 21 N -0.93 -59.46 10.94 21.65 0.24 -59.23 16 22 Si 0.95 49.84 29.58 68.60 2.03 51.87 16 23 H -0.29 -15.58 7.11 99.48 0.71 -14.88 16 24 H -0.29 -15.41 7.11 99.48 0.71 -14.70 16 25 H -0.27 -13.14 7.11 99.48 0.71 -12.44 16 26 C 0.18 8.87 4.60 85.83 0.39 9.27 16 27 C 0.11 3.81 3.98 38.53 0.15 3.96 16 28 H 0.09 2.85 8.14 -2.39 -0.02 2.83 16 29 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.06 2.48 7.11 -2.39 -0.02 2.46 16 33 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 34 H 0.28 2.00 5.56 -2.91 -0.02 1.99 16 35 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.11 1.04 6.17 -2.39 -0.01 1.03 16 37 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.04 1.32 7.68 -2.38 -0.02 1.30 16 39 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.05 1.89 7.87 -2.39 -0.02 1.87 16 41 H 0.24 15.32 8.31 -92.71 -0.77 14.55 16 42 H 0.00 -0.26 8.00 -2.39 -0.02 -0.28 16 43 H 0.05 3.16 4.95 -2.39 -0.01 3.15 16 Total: -1.00 -89.63 350.48 3.27 -86.36 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: 1.04 Total: 3.51 kcal Atomic # 6 Polarization: 20.96 SS G_CDS: 6.36 Total: 27.32 kcal Atomic # 7 Polarization: -121.00 SS G_CDS: -5.35 Total: -126.36 kcal Atomic # 8 Polarization: -41.91 SS G_CDS: -0.80 Total: -42.71 kcal Atomic # 14 Polarization: 49.84 SS G_CDS: 2.03 Total: 51.87 kcal Total: -89.63 3.27 -86.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084770443.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.688 kcal (2) G-P(sol) polarization free energy of solvation -89.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds