Wall clock time and date at job start Tue Mar 31 2020 13:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35526 * 117.00185 * 2 1 4 4 C 1.38816 * 120.89571 * 0.25048 * 3 2 1 5 5 C 1.38717 * 119.20117 * 180.29738 * 4 3 2 6 6 O 1.35519 * 119.47403 * 179.74358 * 5 4 3 7 7 N 1.32591 * 121.04835 * 359.71597 * 5 4 3 8 8 C 1.31608 * 121.98147 * 0.02562 * 7 5 4 9 9 C 1.39550 * 120.66842 * 359.97438 * 8 7 5 10 10 C 1.47336 * 120.55531 * 180.02562 * 9 8 7 11 11 O 1.21615 * 120.00259 * 209.49632 * 10 9 8 12 12 N 1.34777 * 120.00237 * 29.49104 * 10 9 8 13 13 C 1.46503 * 119.99976 * 359.81477 * 12 10 9 14 14 C 1.46500 * 120.00415 * 180.08501 * 12 10 9 15 15 C 1.52998 * 109.47408 * 255.87739 * 14 12 10 16 16 H 1.09001 * 112.96448 * 309.62376 * 15 14 12 17 17 C 1.53946 * 113.77063 * 177.94117 * 15 14 12 18 18 C 1.53945 * 86.29160 * 222.09624 * 17 15 14 19 19 N 1.47584 * 86.11958 * 23.60431 * 18 17 15 20 20 C 1.36939 * 134.49150 * 155.35777 * 19 18 17 21 21 H 1.08003 * 119.99524 * 176.64725 * 20 19 18 22 22 C 1.38809 * 119.99982 * 356.64078 * 20 19 18 23 23 N 1.31614 * 120.00103 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99788 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47048 * 90.00376 * 24 22 20 26 26 H 1.48495 * 109.47409 * 210.00310 * 24 22 20 27 27 H 1.48497 * 109.47293 * 330.00528 * 24 22 20 28 28 H 1.08998 * 109.46792 * 299.99974 * 1 2 3 29 29 H 1.08998 * 109.46746 * 59.99713 * 1 2 3 30 30 H 1.08994 * 109.46973 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.40283 * 359.97438 * 4 3 2 32 32 H 0.96701 * 114.00033 * 269.97956 * 6 5 4 33 33 H 1.08003 * 119.66817 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.47193 * 263.95362 * 13 12 10 35 35 H 1.09002 * 109.47218 * 23.95005 * 13 12 10 36 36 H 1.08999 * 109.47199 * 143.94821 * 13 12 10 37 37 H 1.08997 * 109.46966 * 15.87697 * 14 12 10 38 38 H 1.08996 * 109.46987 * 135.87591 * 14 12 10 39 39 H 1.08997 * 113.73840 * 336.43769 * 17 15 14 40 40 H 1.08994 * 113.74270 * 107.63978 * 17 15 14 41 41 H 1.08993 * 113.77433 * 137.91182 * 18 17 15 42 42 H 1.09008 * 113.76607 * 269.19386 * 18 17 15 43 43 H 0.96998 * 120.00154 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2075 0.0000 4 6 1.3066 2.3834 0.0052 5 6 1.9727 3.6002 -0.0013 6 8 1.2579 4.7516 -0.0015 7 7 3.2975 3.6547 -0.0067 8 6 4.0398 2.5679 -0.0067 9 6 3.4501 1.3031 -0.0004 10 6 4.2835 0.0881 0.0002 11 8 3.8695 -0.9335 -0.5135 12 7 5.5047 0.1088 0.5699 13 6 6.0052 1.3407 1.1851 14 6 6.3342 -1.0987 0.5689 15 6 6.3134 -1.7331 1.9610 16 1 6.5353 -1.0212 2.7561 17 6 7.1170 -3.0425 2.0583 18 6 5.9445 -3.5827 2.8970 19 7 5.1207 -2.5633 2.2185 20 6 3.7858 -2.4382 1.9398 21 1 3.4155 -1.5430 1.4625 22 6 2.9088 -3.4621 2.2705 23 7 3.3602 -4.5529 2.8525 24 14 1.0878 -3.2911 1.8909 25 1 0.8123 -3.8289 0.5344 26 1 0.2995 -4.0509 2.8941 27 1 0.7039 -1.8576 1.9424 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2271 2.3514 0.0089 32 1 1.0469 5.0834 -0.8850 33 1 5.1162 2.6558 -0.0107 34 1 6.6331 1.8741 0.4715 35 1 5.1638 1.9717 1.4714 36 1 6.5911 1.0927 2.0702 37 1 5.9419 -1.8083 -0.1596 38 1 7.3585 -0.8357 0.3047 39 1 7.2440 -3.5514 1.1028 40 1 8.0489 -2.9452 2.6151 41 1 5.6649 -4.6074 2.6527 42 1 6.0577 -3.4167 3.9684 43 1 2.7473 -5.2682 3.0839 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085822830.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:54 Heat of formation + Delta-G solvation = 21.360917 kcal Electronic energy + Delta-G solvation = -28762.086295 eV Core-core repulsion = 24812.096458 eV Total energy + Delta-G solvation = -3949.989836 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.13215 -39.26664 -38.72862 -37.60362 -36.81995 -34.99478 -31.98232 -31.64839 -31.03162 -28.39865 -27.67303 -27.36238 -26.54686 -24.04104 -23.14741 -23.08789 -22.09575 -19.65153 -19.27300 -18.93350 -17.75674 -17.19853 -16.86403 -16.62094 -16.06472 -15.50547 -15.29680 -15.07051 -14.78809 -14.54811 -14.37944 -13.94715 -13.76665 -13.43736 -13.10119 -12.73475 -12.64030 -12.54145 -12.09647 -11.75541 -11.58217 -11.49013 -11.41086 -11.27415 -10.91900 -10.77431 -10.57464 -10.34947 -9.95898 -9.83027 -9.55888 -9.28443 -9.24817 -9.08093 -8.75170 -8.54993 -8.09951 -6.64815 -5.51233 -2.81157 0.56890 1.16091 2.98639 3.10669 3.30769 3.42773 3.50917 3.56031 3.59029 3.84799 4.38487 4.57727 4.66794 4.74055 4.98819 5.05831 5.13049 5.15488 5.27455 5.34885 5.40291 5.41480 5.56547 5.61995 5.68242 5.71583 5.78106 5.94847 6.04429 6.07929 6.14808 6.41382 6.48164 6.76281 6.82247 6.99660 7.12227 7.26952 7.42630 7.56990 7.70975 7.79939 7.87071 8.25938 8.73543 9.33704 9.98281 10.81945 11.66108 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012888 B = 0.005927 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.014368 B = 4722.738216 C = 6482.033899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.263 6.263 3 C 0.237 3.763 4 C -0.290 4.290 5 C 0.359 3.641 6 O -0.481 6.481 7 N -0.533 5.533 8 C 0.174 3.826 9 C -0.223 4.223 10 C 0.560 3.440 11 O -0.484 6.484 12 N -0.607 5.607 13 C 0.064 3.936 14 C 0.117 3.883 15 C 0.123 3.877 16 H 0.042 0.958 17 C -0.158 4.158 18 C 0.154 3.846 19 N -0.596 5.596 20 C -0.189 4.189 21 H 0.092 0.908 22 C -0.018 4.018 23 N -0.932 5.932 24 Si 0.903 3.097 25 H -0.291 1.291 26 H -0.300 1.300 27 H -0.277 1.277 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.105 0.895 31 H 0.149 0.851 32 H 0.403 0.597 33 H 0.185 0.815 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.065 0.935 39 H 0.074 0.926 40 H 0.049 0.951 41 H 0.076 0.924 42 H 0.021 0.979 43 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.359 15.885 -6.917 17.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.170 6.170 3 C 0.181 3.819 4 C -0.313 4.313 5 C 0.182 3.818 6 O -0.289 6.289 7 N -0.256 5.256 8 C 0.016 3.984 9 C -0.230 4.230 10 C 0.347 3.653 11 O -0.357 6.357 12 N -0.341 5.341 13 C -0.079 4.079 14 C -0.006 4.006 15 C 0.015 3.985 16 H 0.059 0.941 17 C -0.197 4.197 18 C 0.029 3.971 19 N -0.322 5.322 20 C -0.317 4.317 21 H 0.110 0.890 22 C -0.212 4.212 23 N -0.582 5.582 24 Si 0.736 3.264 25 H -0.218 1.218 26 H -0.228 1.228 27 H -0.203 1.203 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.123 0.877 31 H 0.167 0.833 32 H 0.261 0.739 33 H 0.202 0.798 34 H 0.076 0.924 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.115 0.885 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.094 0.906 42 H 0.039 0.961 43 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 1.173 15.749 -6.616 17.123 hybrid contribution -1.859 -0.380 -0.279 1.917 sum -0.685 15.369 -6.895 16.859 Atomic orbital electron populations 1.23277 0.78030 1.04978 1.01193 1.86450 1.21449 1.24256 1.84888 1.19186 0.90982 0.85038 0.86704 1.22064 1.02152 0.91683 1.15370 1.18951 0.86706 0.84771 0.91388 1.84703 1.71369 1.38832 1.33968 1.67238 1.06355 1.33171 1.18838 1.23371 1.00582 0.84877 0.89529 1.20580 0.91645 0.96533 1.14239 1.17508 0.81010 0.86920 0.79883 1.90912 1.70111 1.31406 1.43284 1.47511 1.16841 1.12043 1.57710 1.22269 0.99981 0.87332 0.98361 1.21917 0.92716 0.85963 1.00026 1.22622 0.88873 0.93087 0.93907 0.94084 1.23790 0.97057 0.97717 1.01127 1.22231 0.85385 0.96421 0.93064 1.46059 1.01947 1.19696 1.64462 1.19349 0.80644 1.01756 1.29972 0.89039 1.24681 0.97683 0.96738 1.02086 1.69824 1.33004 1.07321 1.48039 0.86205 0.86074 0.77083 0.77083 1.21847 1.22758 1.20252 0.92132 0.92248 0.87659 0.83339 0.73897 0.79813 0.92375 0.90467 0.90902 0.88460 0.91704 0.90715 0.93229 0.90585 0.96127 0.94332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.31 101.05 0.94 1.22 16 2 O -0.26 -5.01 9.12 -36.63 -0.33 -5.35 16 3 C 0.24 3.98 6.70 -38.36 -0.26 3.73 16 4 C -0.29 -3.87 9.02 -39.19 -0.35 -4.22 16 5 C 0.36 4.63 7.73 -17.05 -0.13 4.49 16 6 O -0.48 -4.96 13.54 -18.25 -0.25 -5.21 16 7 N -0.53 -7.27 10.36 -13.04 -0.14 -7.40 16 8 C 0.17 2.33 8.63 -17.16 -0.15 2.18 16 9 C -0.22 -3.74 5.48 -104.70 -0.57 -4.31 16 10 C 0.56 10.97 5.97 -12.56 -0.08 10.89 16 11 O -0.48 -11.63 13.14 -13.09 -0.17 -11.80 16 12 N -0.61 -10.25 2.91 -182.89 -0.53 -10.78 16 13 C 0.06 0.76 8.73 59.85 0.52 1.28 16 14 C 0.12 2.07 5.50 -4.04 -0.02 2.05 16 15 C 0.12 2.49 4.41 -66.86 -0.29 2.19 16 16 H 0.04 0.81 7.51 -51.93 -0.39 0.42 16 17 C -0.16 -3.00 7.86 -25.81 -0.20 -3.20 16 18 C 0.15 3.75 7.60 -2.97 -0.02 3.73 16 19 N -0.60 -15.60 3.57 -170.72 -0.61 -16.21 16 20 C -0.19 -5.54 9.85 -15.06 -0.15 -5.69 16 21 H 0.09 2.67 4.58 -52.48 -0.24 2.43 16 22 C -0.02 -0.54 5.50 -17.43 -0.10 -0.63 16 23 N -0.93 -29.22 11.32 55.49 0.63 -28.59 16 24 Si 0.90 23.83 29.49 -169.99 -5.01 18.81 16 25 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 26 H -0.30 -7.97 7.11 56.52 0.40 -7.56 16 27 H -0.28 -6.80 6.47 56.52 0.37 -6.43 16 28 H 0.06 0.75 7.70 -51.93 -0.40 0.35 16 29 H 0.06 0.62 7.72 -51.93 -0.40 0.22 16 30 H 0.11 1.52 7.98 -51.93 -0.41 1.11 16 31 H 0.15 1.60 6.45 -52.49 -0.34 1.26 16 32 H 0.40 1.95 9.06 45.56 0.41 2.36 16 33 H 0.19 1.93 4.74 -52.48 -0.25 1.68 16 34 H 0.06 0.50 7.36 -51.93 -0.38 0.12 16 35 H 0.08 0.93 4.84 -51.93 -0.25 0.68 16 36 H 0.07 0.82 7.43 -51.93 -0.39 0.44 16 37 H 0.10 2.05 7.06 -51.93 -0.37 1.69 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 39 H 0.07 1.39 8.10 -51.93 -0.42 0.97 16 40 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.08 2.06 7.01 -51.93 -0.36 1.70 16 42 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 43 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 346.73 15.07 5.23 5.23 Total: -1.00 -38.65 346.73 -6.68 -45.33 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -4.63 Total: 2.24 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: -0.86 Total: 13.72 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: -0.65 Total: -62.98 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.75 Total: -22.35 kcal Atomic # 14 Polarization: 23.83 SS G_CDS: -5.01 Total: 18.81 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -38.65 -6.68 -45.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085822830.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.689 kcal (2) G-P(sol) polarization free energy of solvation -38.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.328 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds