Wall clock time and date at job start Tue Mar 31 2020 13:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35526 * 117.00185 * 2 1 4 4 C 1.38816 * 120.89571 * 0.25048 * 3 2 1 5 5 C 1.38717 * 119.20117 * 180.29738 * 4 3 2 6 6 O 1.35519 * 119.47403 * 179.74358 * 5 4 3 7 7 N 1.32591 * 121.04835 * 359.71597 * 5 4 3 8 8 C 1.31608 * 121.98147 * 0.02562 * 7 5 4 9 9 C 1.39550 * 120.66842 * 359.97438 * 8 7 5 10 10 C 1.47336 * 120.55531 * 180.02562 * 9 8 7 11 11 O 1.21615 * 120.00259 * 209.49632 * 10 9 8 12 12 N 1.34777 * 120.00237 * 29.49104 * 10 9 8 13 13 C 1.46503 * 119.99976 * 359.81477 * 12 10 9 14 14 C 1.46500 * 120.00415 * 180.08501 * 12 10 9 15 15 C 1.52998 * 109.47408 * 255.87739 * 14 12 10 16 16 H 1.09001 * 112.96448 * 309.62376 * 15 14 12 17 17 C 1.53946 * 113.77063 * 177.94117 * 15 14 12 18 18 C 1.53945 * 86.29160 * 222.09624 * 17 15 14 19 19 N 1.47584 * 86.11958 * 23.60431 * 18 17 15 20 20 C 1.36939 * 134.49150 * 155.35777 * 19 18 17 21 21 H 1.08003 * 119.99524 * 176.64725 * 20 19 18 22 22 C 1.38809 * 119.99982 * 356.64078 * 20 19 18 23 23 N 1.31614 * 120.00103 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99788 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47048 * 90.00376 * 24 22 20 26 26 H 1.48495 * 109.47409 * 210.00310 * 24 22 20 27 27 H 1.48497 * 109.47293 * 330.00528 * 24 22 20 28 28 H 1.08998 * 109.46792 * 299.99974 * 1 2 3 29 29 H 1.08998 * 109.46746 * 59.99713 * 1 2 3 30 30 H 1.08994 * 109.46973 * 179.97438 * 1 2 3 31 31 H 1.08002 * 120.40283 * 359.97438 * 4 3 2 32 32 H 0.96701 * 114.00033 * 269.97956 * 6 5 4 33 33 H 1.08003 * 119.66817 * 180.02562 * 8 7 5 34 34 H 1.08998 * 109.47193 * 263.95362 * 13 12 10 35 35 H 1.09002 * 109.47218 * 23.95005 * 13 12 10 36 36 H 1.08999 * 109.47199 * 143.94821 * 13 12 10 37 37 H 1.08997 * 109.46966 * 15.87697 * 14 12 10 38 38 H 1.08996 * 109.46987 * 135.87591 * 14 12 10 39 39 H 1.08997 * 113.73840 * 336.43769 * 17 15 14 40 40 H 1.08994 * 113.74270 * 107.63978 * 17 15 14 41 41 H 1.08993 * 113.77433 * 137.91182 * 18 17 15 42 42 H 1.09008 * 113.76607 * 269.19386 * 18 17 15 43 43 H 0.96998 * 120.00154 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2075 0.0000 4 6 1.3066 2.3834 0.0052 5 6 1.9727 3.6002 -0.0013 6 8 1.2579 4.7516 -0.0015 7 7 3.2975 3.6547 -0.0067 8 6 4.0398 2.5679 -0.0067 9 6 3.4501 1.3031 -0.0004 10 6 4.2835 0.0881 0.0002 11 8 3.8695 -0.9335 -0.5135 12 7 5.5047 0.1088 0.5699 13 6 6.0052 1.3407 1.1851 14 6 6.3342 -1.0987 0.5689 15 6 6.3134 -1.7331 1.9610 16 1 6.5353 -1.0212 2.7561 17 6 7.1170 -3.0425 2.0583 18 6 5.9445 -3.5827 2.8970 19 7 5.1207 -2.5633 2.2185 20 6 3.7858 -2.4382 1.9398 21 1 3.4155 -1.5430 1.4625 22 6 2.9088 -3.4621 2.2705 23 7 3.3602 -4.5529 2.8525 24 14 1.0878 -3.2911 1.8909 25 1 0.8123 -3.8289 0.5344 26 1 0.2995 -4.0509 2.8941 27 1 0.7039 -1.8576 1.9424 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2271 2.3514 0.0089 32 1 1.0469 5.0834 -0.8850 33 1 5.1162 2.6558 -0.0107 34 1 6.6331 1.8741 0.4715 35 1 5.1638 1.9717 1.4714 36 1 6.5911 1.0927 2.0702 37 1 5.9419 -1.8083 -0.1596 38 1 7.3585 -0.8357 0.3047 39 1 7.2440 -3.5514 1.1028 40 1 8.0489 -2.9452 2.6151 41 1 5.6649 -4.6074 2.6527 42 1 6.0577 -3.4167 3.9684 43 1 2.7473 -5.2682 3.0839 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085822830.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:53 Heat of formation + Delta-G solvation = -11.096595 kcal Electronic energy + Delta-G solvation = -28763.493758 eV Core-core repulsion = 24812.096458 eV Total energy + Delta-G solvation = -3951.397300 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.25228 -40.63075 -39.83733 -39.26567 -37.84463 -36.37633 -34.11538 -32.78068 -32.17302 -29.86067 -29.53606 -28.49741 -27.75592 -25.27311 -25.18876 -24.18092 -23.55939 -20.95379 -20.75734 -20.23752 -18.95908 -18.58541 -18.33836 -17.95260 -17.29818 -16.81330 -16.77090 -16.27906 -16.25577 -15.78993 -15.68851 -15.63684 -15.33539 -14.88457 -14.39678 -14.23869 -13.88631 -13.71784 -13.38099 -13.04403 -12.99543 -12.92474 -12.76856 -12.61873 -12.53394 -12.50781 -12.35259 -12.18369 -11.72948 -11.41933 -11.25979 -11.03855 -10.74848 -10.49987 -10.21138 -9.96461 -9.47414 -8.72841 -7.76810 -5.05382 -0.48368 0.07568 1.32430 1.40963 1.48026 1.79013 2.01604 2.11443 2.43217 2.55474 2.70019 3.37975 3.40715 3.46472 3.56309 3.67147 3.97271 4.01579 4.03001 4.16417 4.21954 4.32199 4.34785 4.41785 4.43173 4.52934 4.55572 4.65700 4.74560 4.80118 4.92783 4.97646 5.10694 5.18584 5.20197 5.44921 5.66765 5.75676 5.83942 6.06122 6.09862 6.51162 6.51413 6.74002 7.10180 7.37081 7.78673 8.69390 9.40056 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012888 B = 0.005927 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.014368 B = 4722.738216 C = 6482.033899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.009 3.991 2 O -0.308 6.308 3 C 0.216 3.784 4 C -0.285 4.285 5 C 0.370 3.630 6 O -0.481 6.481 7 N -0.539 5.539 8 C 0.194 3.806 9 C -0.254 4.254 10 C 0.554 3.446 11 O -0.547 6.547 12 N -0.608 5.608 13 C 0.056 3.944 14 C 0.123 3.877 15 C 0.125 3.875 16 H 0.062 0.938 17 C -0.126 4.126 18 C 0.142 3.858 19 N -0.629 5.629 20 C -0.174 4.174 21 H 0.090 0.910 22 C -0.089 4.089 23 N -0.966 5.966 24 Si 0.952 3.048 25 H -0.301 1.301 26 H -0.305 1.305 27 H -0.254 1.254 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.173 0.827 32 H 0.428 0.572 33 H 0.215 0.785 34 H 0.103 0.897 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.056 0.944 38 H 0.118 0.882 39 H 0.076 0.924 40 H 0.096 0.904 41 H 0.036 0.964 42 H 0.016 0.984 43 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.786 19.842 -7.300 21.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.217 6.217 3 C 0.160 3.840 4 C -0.307 4.307 5 C 0.193 3.807 6 O -0.293 6.293 7 N -0.262 5.262 8 C 0.037 3.963 9 C -0.260 4.260 10 C 0.342 3.658 11 O -0.424 6.424 12 N -0.340 5.340 13 C -0.086 4.086 14 C -0.001 4.001 15 C 0.018 3.982 16 H 0.079 0.921 17 C -0.165 4.165 18 C 0.017 3.983 19 N -0.355 5.355 20 C -0.303 4.303 21 H 0.108 0.892 22 C -0.279 4.279 23 N -0.619 5.619 24 Si 0.783 3.217 25 H -0.230 1.230 26 H -0.232 1.232 27 H -0.178 1.178 28 H 0.093 0.907 29 H 0.112 0.888 30 H 0.111 0.889 31 H 0.190 0.810 32 H 0.291 0.709 33 H 0.231 0.769 34 H 0.121 0.879 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.075 0.925 38 H 0.135 0.865 39 H 0.095 0.905 40 H 0.114 0.886 41 H 0.055 0.945 42 H 0.034 0.966 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 2.635 19.816 -7.007 21.183 hybrid contribution -2.236 -1.426 -0.187 2.659 sum 0.399 18.390 -7.194 19.751 Atomic orbital electron populations 1.23505 0.76359 1.04986 1.03606 1.86379 1.23621 1.26199 1.85517 1.19526 0.91446 0.85378 0.87656 1.22219 1.03205 0.90619 1.14689 1.19089 0.86703 0.85367 0.89515 1.84655 1.70830 1.37576 1.36216 1.67385 1.06774 1.32837 1.19250 1.23737 1.01753 0.83405 0.87430 1.20602 0.91695 0.96608 1.17118 1.18031 0.81631 0.87090 0.79039 1.90870 1.71546 1.33812 1.46212 1.47663 1.16061 1.13267 1.57025 1.22615 1.00593 0.85520 0.99843 1.21763 0.95218 0.85923 0.97161 1.22904 0.85878 0.93723 0.95679 0.92091 1.23517 0.96828 0.95747 1.00405 1.22229 0.88104 0.94454 0.93551 1.46469 1.02288 1.21944 1.64753 1.19607 0.82453 1.00918 1.27306 0.89233 1.25407 1.01380 0.97233 1.03904 1.70013 1.33412 1.07974 1.50479 0.85408 0.82299 0.78082 0.75876 1.22972 1.23219 1.17828 0.90715 0.88810 0.88950 0.80976 0.70850 0.76907 0.87907 0.90572 0.89684 0.92495 0.86462 0.90529 0.88611 0.94527 0.96645 0.95454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.26 9.31 113.37 1.06 1.31 16 2 O -0.31 -11.90 9.12 -70.74 -0.65 -12.55 16 3 C 0.22 7.10 6.70 23.06 0.15 7.25 16 4 C -0.29 -6.95 9.02 22.52 0.20 -6.75 16 5 C 0.37 8.36 7.73 84.69 0.65 9.01 16 6 O -0.48 -8.05 13.54 -88.22 -1.19 -9.25 16 7 N -0.54 -12.90 10.36 -307.95 -3.19 -16.09 16 8 C 0.19 4.64 8.63 85.04 0.73 5.38 16 9 C -0.25 -8.23 5.48 -19.92 -0.11 -8.34 16 10 C 0.55 21.59 5.97 86.64 0.52 22.11 16 11 O -0.55 -27.27 13.14 13.47 0.18 -27.10 16 12 N -0.61 -19.25 2.91 -850.77 -2.47 -21.72 16 13 C 0.06 1.09 8.73 127.77 1.12 2.21 16 14 C 0.12 4.10 5.50 86.38 0.47 4.57 16 15 C 0.12 4.77 4.41 45.09 0.20 4.97 16 16 H 0.06 2.16 7.51 -2.39 -0.02 2.15 16 17 C -0.13 -4.52 7.86 31.25 0.25 -4.28 16 18 C 0.14 7.03 7.60 86.48 0.66 7.69 16 19 N -0.63 -33.36 3.57 -694.03 -2.48 -35.84 16 20 C -0.17 -10.47 9.85 84.03 0.83 -9.64 16 21 H 0.09 5.40 4.58 -2.91 -0.01 5.39 16 22 C -0.09 -5.64 5.50 84.86 0.47 -5.18 16 23 N -0.97 -63.70 11.32 21.65 0.25 -63.45 16 24 Si 0.95 51.37 29.49 68.60 2.02 53.39 16 25 H -0.30 -16.52 7.11 99.48 0.71 -15.82 16 26 H -0.30 -16.38 7.11 99.48 0.71 -15.68 16 27 H -0.25 -12.50 6.47 99.48 0.64 -11.85 16 28 H 0.07 1.77 7.70 -2.39 -0.02 1.75 16 29 H 0.09 1.83 7.72 -2.39 -0.02 1.81 16 30 H 0.09 2.71 7.98 -2.39 -0.02 2.69 16 31 H 0.17 3.20 6.45 -2.91 -0.02 3.18 16 32 H 0.43 2.36 9.06 -74.06 -0.67 1.69 16 33 H 0.21 3.56 4.74 -2.91 -0.01 3.55 16 34 H 0.10 1.16 7.36 -2.39 -0.02 1.14 16 35 H 0.08 1.55 4.84 -2.39 -0.01 1.54 16 36 H 0.08 1.51 7.43 -2.39 -0.02 1.49 16 37 H 0.06 2.41 7.06 -2.39 -0.02 2.39 16 38 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 39 H 0.08 2.73 8.10 -2.39 -0.02 2.71 16 40 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 41 H 0.04 2.08 7.01 -2.39 -0.02 2.06 16 42 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 43 H 0.24 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -91.47 346.73 0.00 -91.47 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 0.34 Total: 10.82 kcal Atomic # 6 Polarization: 23.12 SS G_CDS: 7.20 Total: 30.32 kcal Atomic # 7 Polarization: -129.21 SS G_CDS: -7.90 Total: -137.10 kcal Atomic # 8 Polarization: -47.23 SS G_CDS: -1.66 Total: -48.89 kcal Atomic # 14 Polarization: 51.37 SS G_CDS: 2.02 Total: 53.39 kcal Total: -91.47 0.00 -91.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085822830.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.372 kcal (2) G-P(sol) polarization free energy of solvation -91.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds