Wall clock time and date at job start Tue Mar 31 2020 13:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35529 * 117.00113 * 2 1 4 4 C 1.38822 * 120.89099 * 359.97438 * 3 2 1 5 5 C 1.38708 * 119.19603 * 180.02562 * 4 3 2 6 6 O 1.35529 * 119.47235 * 180.02562 * 5 4 3 7 7 N 1.32594 * 121.05882 * 0.02562 * 5 4 3 8 8 C 1.31612 * 121.97195 * 359.66111 * 7 5 4 9 9 C 1.39538 * 120.66901 * 0.62485 * 8 7 5 10 10 C 1.47344 * 120.55879 * 179.68161 * 9 8 7 11 11 O 1.21611 * 120.00577 * 146.94638 * 10 9 8 12 12 N 1.34783 * 119.99819 * 326.95647 * 10 9 8 13 13 C 1.46499 * 119.99701 * 6.11573 * 12 10 9 14 14 C 1.46502 * 119.99838 * 186.11501 * 12 10 9 15 15 C 1.52999 * 109.47098 * 264.05150 * 14 12 10 16 16 H 1.09002 * 112.96925 * 294.78509 * 15 14 12 17 17 C 1.53948 * 113.76757 * 66.46957 * 15 14 12 18 18 C 1.53940 * 86.29129 * 137.90658 * 17 15 14 19 19 N 1.47579 * 113.76577 * 163.10607 * 15 14 12 20 20 C 1.36942 * 134.49445 * 41.07405 * 19 15 14 21 21 H 1.08003 * 119.99555 * 4.67424 * 20 19 15 22 22 C 1.38804 * 120.00108 * 184.67740 * 20 19 15 23 23 N 1.31618 * 120.00427 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00131 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47031 * 59.99908 * 24 22 20 26 26 H 1.48496 * 109.47311 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46867 * 300.00366 * 24 22 20 28 28 H 1.09001 * 109.47584 * 59.99890 * 1 2 3 29 29 H 1.08997 * 109.47347 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47080 * 299.99960 * 1 2 3 31 31 H 1.07997 * 120.40287 * 359.97438 * 4 3 2 32 32 H 0.96698 * 114.00209 * 89.99989 * 6 5 4 33 33 H 1.07997 * 119.66466 * 180.31348 * 8 7 5 34 34 H 1.09007 * 109.47089 * 95.97937 * 13 12 10 35 35 H 1.08999 * 109.47373 * 335.97572 * 13 12 10 36 36 H 1.09000 * 109.47140 * 215.97174 * 13 12 10 37 37 H 1.08997 * 109.47086 * 24.05926 * 14 12 10 38 38 H 1.09002 * 109.46513 * 144.05704 * 14 12 10 39 39 H 1.09002 * 113.73760 * 252.25170 * 17 15 14 40 40 H 1.08995 * 113.74298 * 23.44684 * 17 15 14 41 41 H 1.08997 * 113.77461 * 90.68873 * 18 17 15 42 42 H 1.09002 * 113.77070 * 221.97967 * 18 17 15 43 43 H 0.96994 * 120.00527 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0442 1.2076 0.0000 4 6 1.3064 2.3835 -0.0005 5 6 1.9724 3.6002 -0.0011 6 8 1.2576 4.7516 -0.0010 7 7 3.2972 3.6548 -0.0016 8 6 4.0396 2.5681 0.0050 9 6 3.4500 1.3034 -0.0002 10 6 4.2834 0.0883 0.0001 11 8 3.8973 -0.9139 0.5706 12 7 5.4739 0.0875 -0.6318 13 6 6.0005 1.3294 -1.2034 14 6 6.2412 -1.1551 -0.7471 15 6 7.2744 -1.2229 0.3794 16 1 8.0352 -0.4458 0.3060 17 6 6.6547 -1.3543 1.7825 18 6 7.7632 -2.3841 2.0663 19 7 7.8239 -2.5744 0.6018 20 6 8.2269 -3.5937 -0.2192 21 1 8.2393 -3.4519 -1.2898 22 6 8.6194 -4.8090 0.3246 23 7 8.6047 -4.9816 1.6293 24 14 9.1684 -6.1996 -0.7953 25 1 10.3473 -5.7627 -1.5855 26 1 9.5340 -7.3816 0.0259 27 1 8.0608 -6.5597 -1.7167 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 0.2269 2.3513 -0.0014 32 1 1.0505 5.0860 0.8823 33 1 5.1159 2.6560 0.0095 34 1 6.6875 1.7927 -0.4951 35 1 5.1766 2.0123 -1.4102 36 1 6.5296 1.1072 -2.1301 37 1 5.5659 -2.0074 -0.6726 38 1 6.7515 -1.1790 -1.7100 39 1 6.7331 -0.4482 2.3834 40 1 5.6502 -1.7773 1.7808 41 1 8.6690 -1.9494 2.4890 42 1 7.4179 -3.2620 2.6124 43 1 8.8786 -5.8310 2.0093 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085822831.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:57 Heat of formation + Delta-G solvation = 16.994836 kcal Electronic energy + Delta-G solvation = -27515.162039 eV Core-core repulsion = 23564.982875 eV Total energy + Delta-G solvation = -3950.179164 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.40020 -39.50017 -39.03222 -37.62049 -37.02464 -35.22442 -32.15764 -31.89979 -31.23792 -28.55973 -27.73570 -27.64075 -26.74697 -24.20619 -23.37913 -23.17317 -22.22602 -19.91084 -19.51403 -18.85891 -17.98036 -17.44202 -17.12792 -16.56359 -16.38439 -15.79049 -15.52576 -15.26619 -14.96190 -14.80804 -14.63634 -14.03579 -13.88234 -13.54746 -13.22007 -13.00421 -12.80938 -12.35461 -12.29479 -12.22057 -11.94230 -11.82505 -11.61958 -11.32839 -10.93856 -10.78522 -10.59997 -10.40371 -10.14020 -9.75115 -9.62200 -9.55665 -9.45227 -9.39024 -9.07876 -8.68058 -8.29175 -6.76159 -5.65986 -2.99310 0.33133 0.89008 2.68235 2.79991 3.08610 3.17446 3.44777 3.48433 3.50006 3.52841 4.15800 4.32484 4.49022 4.54260 4.70590 4.79085 4.81051 4.94738 5.10365 5.12982 5.24780 5.29522 5.36681 5.39434 5.54132 5.63481 5.69951 5.90802 5.96482 6.04379 6.20231 6.47132 6.64910 6.75833 6.79012 6.85484 6.92279 7.04762 7.37865 7.49602 7.54981 7.65781 7.73264 8.09835 8.40608 9.13343 9.80757 10.72134 11.50149 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022542 B = 0.003038 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.844558 B = 9215.507191 C = 9708.123440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.277 6.277 3 C 0.234 3.766 4 C -0.289 4.289 5 C 0.363 3.637 6 O -0.481 6.481 7 N -0.530 5.530 8 C 0.178 3.822 9 C -0.224 4.224 10 C 0.564 3.436 11 O -0.506 6.506 12 N -0.604 5.604 13 C 0.057 3.943 14 C 0.119 3.881 15 C 0.128 3.872 16 H 0.041 0.959 17 C -0.156 4.156 18 C 0.155 3.845 19 N -0.600 5.600 20 C -0.222 4.222 21 H 0.077 0.923 22 C -0.007 4.007 23 N -0.919 5.919 24 Si 0.910 3.090 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.284 1.284 28 H 0.059 0.941 29 H 0.109 0.891 30 H 0.060 0.940 31 H 0.150 0.850 32 H 0.406 0.594 33 H 0.189 0.811 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.068 0.932 39 H 0.040 0.960 40 H 0.088 0.912 41 H 0.021 0.979 42 H 0.076 0.924 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.044 19.068 -3.105 25.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.185 6.185 3 C 0.178 3.822 4 C -0.311 4.311 5 C 0.185 3.815 6 O -0.289 6.289 7 N -0.252 5.252 8 C 0.021 3.979 9 C -0.231 4.231 10 C 0.350 3.650 11 O -0.380 6.380 12 N -0.338 5.338 13 C -0.086 4.086 14 C -0.004 4.004 15 C 0.020 3.980 16 H 0.059 0.941 17 C -0.195 4.195 18 C 0.030 3.970 19 N -0.326 5.326 20 C -0.350 4.350 21 H 0.094 0.906 22 C -0.204 4.204 23 N -0.566 5.566 24 Si 0.740 3.260 25 H -0.213 1.213 26 H -0.216 1.216 27 H -0.211 1.211 28 H 0.078 0.922 29 H 0.127 0.873 30 H 0.079 0.921 31 H 0.168 0.832 32 H 0.264 0.736 33 H 0.205 0.795 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.087 0.913 39 H 0.059 0.941 40 H 0.107 0.893 41 H 0.038 0.962 42 H 0.094 0.906 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -15.716 18.697 -3.466 24.669 hybrid contribution -0.185 -1.139 -0.214 1.174 sum -15.900 17.558 -3.680 23.972 Atomic orbital electron populations 1.23268 0.77634 1.05036 1.01546 1.86331 1.21754 1.24812 1.85613 1.19096 0.90767 0.84849 0.87474 1.22059 1.02156 0.91640 1.15265 1.19000 0.86692 0.84919 0.90857 1.84692 1.71295 1.38721 1.34226 1.67296 1.06382 1.33166 1.18376 1.23428 1.00775 0.84780 0.88901 1.20529 0.91531 0.96501 1.14521 1.17592 0.80878 0.86954 0.79571 1.90851 1.71418 1.33785 1.41964 1.47668 1.19345 1.10555 1.56221 1.22436 0.99627 0.87124 0.99403 1.21882 0.94280 0.85030 0.99172 1.22523 0.92529 0.89409 0.93509 0.94126 1.23811 1.00941 0.98728 0.95970 1.22305 0.92712 0.95498 0.86492 1.45942 1.74342 1.09874 1.02490 1.18928 1.37437 0.89720 0.88898 0.90553 1.24766 1.02206 0.97516 0.95875 1.69817 1.53247 1.24370 1.09176 0.86243 0.78425 0.81890 0.79438 1.21322 1.21630 1.21110 0.92207 0.87307 0.92097 0.83208 0.73553 0.79484 0.91690 0.90182 0.90794 0.88833 0.91338 0.94131 0.89307 0.96157 0.90593 0.93710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.84 101.05 0.99 1.14 16 2 O -0.28 -3.59 9.21 -35.58 -0.33 -3.92 16 3 C 0.23 2.88 6.70 -38.36 -0.26 2.63 16 4 C -0.29 -2.76 9.02 -39.19 -0.35 -3.11 16 5 C 0.36 3.64 7.73 -17.05 -0.13 3.51 16 6 O -0.48 -3.79 13.54 -18.28 -0.25 -4.03 16 7 N -0.53 -5.97 10.37 -13.04 -0.14 -6.10 16 8 C 0.18 1.96 8.60 -17.16 -0.15 1.81 16 9 C -0.22 -2.97 5.50 -104.70 -0.58 -3.54 16 10 C 0.56 9.20 7.01 -12.55 -0.09 9.12 16 11 O -0.51 -10.32 13.64 -12.03 -0.16 -10.48 16 12 N -0.60 -9.02 2.80 -182.88 -0.51 -9.53 16 13 C 0.06 0.58 8.89 59.85 0.53 1.11 16 14 C 0.12 2.20 5.41 -4.04 -0.02 2.18 16 15 C 0.13 2.69 4.56 -66.86 -0.31 2.38 16 16 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 17 C -0.16 -3.33 7.25 -25.79 -0.19 -3.52 16 18 C 0.15 3.91 7.64 -2.85 -0.02 3.88 16 19 N -0.60 -15.81 3.58 -169.75 -0.61 -16.42 16 20 C -0.22 -6.32 10.51 -15.06 -0.16 -6.48 16 21 H 0.08 2.06 7.83 -52.48 -0.41 1.65 16 22 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 23 N -0.92 -28.10 11.32 55.49 0.63 -27.47 16 24 Si 0.91 22.61 29.55 -169.99 -5.02 17.58 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 28 H 0.06 0.35 7.70 -51.93 -0.40 -0.05 16 29 H 0.11 0.70 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.36 7.71 -51.92 -0.40 -0.05 16 31 H 0.15 1.02 6.45 -52.49 -0.34 0.68 16 32 H 0.41 1.10 9.06 45.56 0.41 1.51 16 33 H 0.19 1.66 4.90 -52.49 -0.26 1.40 16 34 H 0.06 0.57 7.60 -51.92 -0.39 0.17 16 35 H 0.08 0.71 4.49 -51.93 -0.23 0.48 16 36 H 0.07 0.68 8.02 -51.93 -0.42 0.26 16 37 H 0.09 2.04 7.34 -51.93 -0.38 1.65 16 38 H 0.07 1.17 8.02 -51.93 -0.42 0.76 16 39 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.09 2.06 6.42 -51.93 -0.33 1.73 16 41 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 2.12 6.98 -51.93 -0.36 1.76 16 43 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 352.91 15.07 5.32 5.32 Total: -1.00 -37.38 352.91 -6.65 -44.03 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -4.76 Total: 0.21 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: -0.82 Total: 10.81 kcal Atomic # 7 Polarization: -58.89 SS G_CDS: -0.63 Total: -59.52 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: -0.74 Total: -18.43 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -37.38 -6.65 -44.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085822831.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.027 kcal (2) G-P(sol) polarization free energy of solvation -37.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds