Wall clock time and date at job start Tue Mar 31 2020 13:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35529 * 117.00113 * 2 1 4 4 C 1.38822 * 120.89099 * 359.97438 * 3 2 1 5 5 C 1.38708 * 119.19603 * 180.02562 * 4 3 2 6 6 O 1.35529 * 119.47235 * 180.02562 * 5 4 3 7 7 N 1.32594 * 121.05882 * 0.02562 * 5 4 3 8 8 C 1.31612 * 121.97195 * 359.66111 * 7 5 4 9 9 C 1.39538 * 120.66901 * 0.62485 * 8 7 5 10 10 C 1.47344 * 120.55879 * 179.68161 * 9 8 7 11 11 O 1.21611 * 120.00577 * 146.94638 * 10 9 8 12 12 N 1.34783 * 119.99819 * 326.95647 * 10 9 8 13 13 C 1.46499 * 119.99701 * 6.11573 * 12 10 9 14 14 C 1.46502 * 119.99838 * 186.11501 * 12 10 9 15 15 C 1.52999 * 109.47098 * 264.05150 * 14 12 10 16 16 H 1.09002 * 112.96925 * 294.78509 * 15 14 12 17 17 C 1.53948 * 113.76757 * 66.46957 * 15 14 12 18 18 C 1.53940 * 86.29129 * 137.90658 * 17 15 14 19 19 N 1.47579 * 113.76577 * 163.10607 * 15 14 12 20 20 C 1.36942 * 134.49445 * 41.07405 * 19 15 14 21 21 H 1.08003 * 119.99555 * 4.67424 * 20 19 15 22 22 C 1.38804 * 120.00108 * 184.67740 * 20 19 15 23 23 N 1.31618 * 120.00427 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 120.00131 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47031 * 59.99908 * 24 22 20 26 26 H 1.48496 * 109.47311 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46867 * 300.00366 * 24 22 20 28 28 H 1.09001 * 109.47584 * 59.99890 * 1 2 3 29 29 H 1.08997 * 109.47347 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47080 * 299.99960 * 1 2 3 31 31 H 1.07997 * 120.40287 * 359.97438 * 4 3 2 32 32 H 0.96698 * 114.00209 * 89.99989 * 6 5 4 33 33 H 1.07997 * 119.66466 * 180.31348 * 8 7 5 34 34 H 1.09007 * 109.47089 * 95.97937 * 13 12 10 35 35 H 1.08999 * 109.47373 * 335.97572 * 13 12 10 36 36 H 1.09000 * 109.47140 * 215.97174 * 13 12 10 37 37 H 1.08997 * 109.47086 * 24.05926 * 14 12 10 38 38 H 1.09002 * 109.46513 * 144.05704 * 14 12 10 39 39 H 1.09002 * 113.73760 * 252.25170 * 17 15 14 40 40 H 1.08995 * 113.74298 * 23.44684 * 17 15 14 41 41 H 1.08997 * 113.77461 * 90.68873 * 18 17 15 42 42 H 1.09002 * 113.77070 * 221.97967 * 18 17 15 43 43 H 0.96994 * 120.00527 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0442 1.2076 0.0000 4 6 1.3064 2.3835 -0.0005 5 6 1.9724 3.6002 -0.0011 6 8 1.2576 4.7516 -0.0010 7 7 3.2972 3.6548 -0.0016 8 6 4.0396 2.5681 0.0050 9 6 3.4500 1.3034 -0.0002 10 6 4.2834 0.0883 0.0001 11 8 3.8973 -0.9139 0.5706 12 7 5.4739 0.0875 -0.6318 13 6 6.0005 1.3294 -1.2034 14 6 6.2412 -1.1551 -0.7471 15 6 7.2744 -1.2229 0.3794 16 1 8.0352 -0.4458 0.3060 17 6 6.6547 -1.3543 1.7825 18 6 7.7632 -2.3841 2.0663 19 7 7.8239 -2.5744 0.6018 20 6 8.2269 -3.5937 -0.2192 21 1 8.2393 -3.4519 -1.2898 22 6 8.6194 -4.8090 0.3246 23 7 8.6047 -4.9816 1.6293 24 14 9.1684 -6.1996 -0.7953 25 1 10.3473 -5.7627 -1.5855 26 1 9.5340 -7.3816 0.0259 27 1 8.0608 -6.5597 -1.7167 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 0.2269 2.3513 -0.0014 32 1 1.0505 5.0860 0.8823 33 1 5.1159 2.6560 0.0095 34 1 6.6875 1.7927 -0.4951 35 1 5.1766 2.0123 -1.4102 36 1 6.5296 1.1072 -2.1301 37 1 5.5659 -2.0074 -0.6726 38 1 6.7515 -1.1790 -1.7100 39 1 6.7331 -0.4482 2.3834 40 1 5.6502 -1.7773 1.7808 41 1 8.6690 -1.9494 2.4890 42 1 7.4179 -3.2620 2.6124 43 1 8.8786 -5.8310 2.0093 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085822831.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:56 Heat of formation + Delta-G solvation = -13.169747 kcal Electronic energy + Delta-G solvation = -27516.470073 eV Core-core repulsion = 23564.982875 eV Total energy + Delta-G solvation = -3951.487198 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.27288 -40.72294 -39.80699 -39.29004 -37.84511 -36.47392 -34.22028 -32.78649 -32.19679 -29.83147 -29.70388 -28.42247 -27.81051 -25.40359 -25.10165 -24.22734 -23.65392 -21.13286 -20.68718 -20.22220 -18.92044 -18.68256 -18.23787 -17.89180 -17.43024 -16.95787 -16.73341 -16.39524 -16.23908 -15.83457 -15.72091 -15.61329 -15.18390 -14.99003 -14.32625 -14.08223 -13.90882 -13.80305 -13.64862 -13.33302 -12.95261 -12.90111 -12.73087 -12.56724 -12.50521 -12.46128 -12.42595 -12.28895 -11.77342 -11.56987 -11.27640 -11.10222 -10.79477 -10.54322 -10.19596 -10.00054 -9.60743 -8.84893 -7.84789 -5.19268 -0.48903 0.08250 1.45003 1.49641 1.55092 1.71378 1.92028 2.02755 2.39057 2.51110 2.68743 3.32046 3.39334 3.42875 3.53232 3.68530 3.93961 4.00019 4.15560 4.20390 4.26834 4.29932 4.35743 4.38240 4.43204 4.51769 4.64912 4.67182 4.69435 4.80151 4.87859 4.90610 5.07254 5.11952 5.18510 5.28365 5.51872 5.57048 5.80996 5.98958 6.06426 6.42318 6.53057 6.76687 6.94366 7.20857 7.65604 8.62665 9.31765 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.022542 B = 0.003038 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.844558 B = 9215.507191 C = 9708.123440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.313 6.313 3 C 0.223 3.777 4 C -0.280 4.280 5 C 0.369 3.631 6 O -0.483 6.483 7 N -0.543 5.543 8 C 0.192 3.808 9 C -0.249 4.249 10 C 0.561 3.439 11 O -0.560 6.560 12 N -0.601 5.601 13 C 0.050 3.950 14 C 0.134 3.866 15 C 0.137 3.863 16 H 0.068 0.932 17 C -0.133 4.133 18 C 0.149 3.851 19 N -0.629 5.629 20 C -0.227 4.227 21 H 0.088 0.912 22 C -0.073 4.073 23 N -0.957 5.957 24 Si 0.978 3.022 25 H -0.274 1.274 26 H -0.297 1.297 27 H -0.278 1.278 28 H 0.079 0.921 29 H 0.113 0.887 30 H 0.079 0.921 31 H 0.178 0.822 32 H 0.429 0.571 33 H 0.209 0.791 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.088 0.912 37 H 0.052 0.948 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.022 0.978 42 H 0.037 0.963 43 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.717 22.022 -4.634 28.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.222 6.222 3 C 0.167 3.833 4 C -0.301 4.301 5 C 0.192 3.808 6 O -0.295 6.295 7 N -0.266 5.266 8 C 0.034 3.966 9 C -0.256 4.256 10 C 0.350 3.650 11 O -0.438 6.438 12 N -0.333 5.333 13 C -0.091 4.091 14 C 0.010 3.990 15 C 0.030 3.970 16 H 0.085 0.915 17 C -0.171 4.171 18 C 0.024 3.976 19 N -0.356 5.356 20 C -0.356 4.356 21 H 0.105 0.895 22 C -0.265 4.265 23 N -0.606 5.606 24 Si 0.806 3.194 25 H -0.199 1.199 26 H -0.223 1.223 27 H -0.204 1.204 28 H 0.098 0.902 29 H 0.131 0.869 30 H 0.097 0.903 31 H 0.195 0.805 32 H 0.292 0.708 33 H 0.225 0.775 34 H 0.106 0.894 35 H 0.114 0.886 36 H 0.107 0.893 37 H 0.070 0.930 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.040 0.960 42 H 0.056 0.944 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -16.414 21.747 -5.021 27.705 hybrid contribution -0.102 -1.905 0.274 1.928 sum -16.517 19.842 -4.747 26.249 Atomic orbital electron populations 1.23568 0.75310 1.06093 1.03374 1.86291 1.24407 1.25815 1.85690 1.19338 0.90824 0.85536 0.87616 1.22226 1.03358 0.90364 1.14191 1.19176 0.86568 0.85677 0.89351 1.84649 1.70783 1.37782 1.36300 1.67393 1.07109 1.32967 1.19137 1.23648 1.01611 0.83739 0.87584 1.20396 0.91809 0.95826 1.17571 1.18098 0.81082 0.87318 0.78516 1.90822 1.72599 1.35992 1.44402 1.47662 1.18800 1.10882 1.56003 1.22768 1.00703 0.85213 1.00463 1.21422 0.93037 0.85712 0.98876 1.22690 0.93010 0.87339 0.93958 0.91511 1.23510 0.98270 0.98420 0.96910 1.22233 0.93990 0.95232 0.86153 1.46282 1.74651 1.11743 1.02878 1.19390 1.35877 0.90491 0.89810 0.89471 1.25664 1.03345 1.00219 0.97314 1.70035 1.55040 1.24508 1.11032 0.85154 0.78324 0.78367 0.77510 1.19947 1.22347 1.20364 0.90235 0.86852 0.90263 0.80461 0.70796 0.77515 0.89388 0.88609 0.89302 0.92951 0.89638 0.91010 0.91568 0.96038 0.94423 0.94517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.84 113.37 1.12 1.26 16 2 O -0.31 -8.11 9.21 -71.79 -0.66 -8.77 16 3 C 0.22 5.26 6.70 23.06 0.15 5.41 16 4 C -0.28 -4.63 9.02 22.52 0.20 -4.43 16 5 C 0.37 6.31 7.73 84.69 0.65 6.96 16 6 O -0.48 -5.90 13.54 -88.32 -1.20 -7.10 16 7 N -0.54 -10.68 10.37 -307.95 -3.19 -13.87 16 8 C 0.19 3.74 8.60 85.04 0.73 4.47 16 9 C -0.25 -6.33 5.50 -19.92 -0.11 -6.44 16 10 C 0.56 18.31 7.01 86.64 0.61 18.91 16 11 O -0.56 -23.80 13.64 12.47 0.17 -23.63 16 12 N -0.60 -17.18 2.80 -850.75 -2.38 -19.57 16 13 C 0.05 0.85 8.89 127.77 1.14 1.99 16 14 C 0.13 4.87 5.41 86.38 0.47 5.34 16 15 C 0.14 5.61 4.56 45.09 0.21 5.81 16 16 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 17 C -0.13 -5.71 7.25 31.25 0.23 -5.48 16 18 C 0.15 7.75 7.64 86.43 0.66 8.41 16 19 N -0.63 -33.59 3.58 -690.95 -2.48 -36.06 16 20 C -0.23 -13.07 10.51 84.03 0.88 -12.19 16 21 H 0.09 4.68 7.83 -2.91 -0.02 4.65 16 22 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 23 N -0.96 -60.68 11.32 21.65 0.25 -60.44 16 24 Si 0.98 47.29 29.55 68.60 2.03 49.31 16 25 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 26 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 27 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 28 H 0.08 0.76 7.70 -2.39 -0.02 0.74 16 29 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.08 0.78 7.71 -2.38 -0.02 0.76 16 31 H 0.18 1.80 6.45 -2.91 -0.02 1.78 16 32 H 0.43 0.75 9.06 -74.06 -0.67 0.08 16 33 H 0.21 2.97 4.90 -2.91 -0.01 2.96 16 34 H 0.09 1.16 7.60 -2.38 -0.02 1.14 16 35 H 0.10 1.39 4.49 -2.39 -0.01 1.38 16 36 H 0.09 1.31 8.02 -2.39 -0.02 1.29 16 37 H 0.05 2.36 7.34 -2.39 -0.02 2.34 16 38 H 0.09 2.80 8.02 -2.39 -0.02 2.78 16 39 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 40 H 0.07 3.19 6.42 -2.39 -0.02 3.17 16 41 H 0.02 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.04 2.22 6.98 -2.39 -0.02 2.20 16 43 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -84.96 352.91 0.33 -84.64 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 0.39 Total: 9.32 kcal Atomic # 6 Polarization: 18.77 SS G_CDS: 7.40 Total: 26.17 kcal Atomic # 7 Polarization: -122.13 SS G_CDS: -7.81 Total: -129.94 kcal Atomic # 8 Polarization: -37.82 SS G_CDS: -1.69 Total: -39.50 kcal Atomic # 14 Polarization: 47.29 SS G_CDS: 2.03 Total: 49.31 kcal Total: -84.96 0.33 -84.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085822831.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.466 kcal (2) G-P(sol) polarization free energy of solvation -84.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds