Wall clock time and date at job start Tue Mar 31 2020 13:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35511 * 117.00206 * 2 1 4 4 C 1.39212 * 120.89802 * 0.02562 * 3 2 1 5 5 C 1.37897 * 119.38672 * 179.72584 * 4 3 2 6 6 N 1.32073 * 121.29448 * 359.97438 * 5 4 3 7 7 C 1.32183 * 121.97955 * 0.02562 * 6 5 4 8 8 O 1.35429 * 119.77844 * 180.02562 * 7 6 5 9 9 C 1.40290 * 120.44215 * 359.97438 * 7 6 5 10 10 C 1.47239 * 120.65158 * 179.97438 * 9 7 6 11 11 O 1.21619 * 120.00058 * 270.00401 * 10 9 7 12 12 N 1.34777 * 119.99413 * 89.99890 * 10 9 7 13 13 C 1.46498 * 120.00632 * 355.31641 * 12 10 9 14 14 C 1.46504 * 119.99366 * 175.30903 * 12 10 9 15 15 C 1.52999 * 109.47066 * 84.44662 * 14 12 10 16 16 H 1.09000 * 112.96267 * 294.05846 * 15 14 12 17 17 C 1.53944 * 113.76933 * 65.73082 * 15 14 12 18 18 C 1.53946 * 86.29036 * 137.90978 * 17 15 14 19 19 N 1.47575 * 113.77332 * 162.37410 * 15 14 12 20 20 C 1.36940 * 134.48953 * 41.06925 * 19 15 14 21 21 H 1.08001 * 120.00126 * 353.75630 * 20 19 15 22 22 C 1.38810 * 119.99782 * 173.75521 * 20 19 15 23 23 N 1.31619 * 120.00428 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99858 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47139 * 90.00357 * 24 22 20 26 26 H 1.48503 * 109.47295 * 210.00406 * 24 22 20 27 27 H 1.48500 * 109.47332 * 330.00552 * 24 22 20 28 28 H 1.08998 * 109.46725 * 59.99763 * 1 2 3 29 29 H 1.08998 * 109.46992 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47316 * 300.00200 * 1 2 3 31 31 H 1.08000 * 120.30598 * 359.73909 * 4 3 2 32 32 H 1.08009 * 119.35131 * 179.97438 * 5 4 3 33 33 H 0.96701 * 114.00082 * 90.00054 * 8 7 6 34 34 H 1.09001 * 109.47445 * 89.99604 * 13 12 10 35 35 H 1.08997 * 109.47194 * 209.99496 * 13 12 10 36 36 H 1.09000 * 109.46708 * 329.99854 * 13 12 10 37 37 H 1.09004 * 109.46748 * 204.44181 * 14 12 10 38 38 H 1.08996 * 109.47739 * 324.44717 * 14 12 10 39 39 H 1.09007 * 113.74661 * 252.25559 * 17 15 14 40 40 H 1.09000 * 113.74385 * 23.46078 * 17 15 14 41 41 H 1.09008 * 113.76657 * 90.69563 * 18 17 15 42 42 H 1.08994 * 113.77206 * 221.97570 * 18 17 15 43 43 H 0.96996 * 120.00211 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 1.3044 2.3867 0.0005 5 6 1.9627 3.5984 0.0063 6 7 3.2819 3.6625 0.0118 7 6 4.0355 2.5765 0.0116 8 8 5.3847 2.6941 0.0179 9 6 3.4471 1.3030 0.0059 10 6 4.2822 0.0903 0.0051 11 8 4.6306 -0.4075 -1.0484 12 7 4.6605 -0.4680 1.1720 13 6 4.3284 0.1873 2.4394 14 6 5.4039 -1.7305 1.1729 15 6 6.8946 -1.4447 0.9811 16 1 7.1248 -1.0266 0.0011 17 6 7.5341 -0.6738 2.1502 18 6 8.7282 -1.6336 1.9988 19 7 7.7704 -2.5671 1.3697 20 6 7.7158 -3.9262 1.2111 21 1 6.8347 -4.3857 0.7881 22 6 8.7931 -4.7134 1.5943 23 7 9.8667 -4.1536 2.1103 24 14 8.7184 -6.5674 1.3787 25 1 9.2473 -6.9318 0.0398 26 1 9.5387 -7.2214 2.4298 27 1 7.3099 -7.0230 1.4952 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 0.2250 2.3529 -0.0033 32 1 1.3882 4.5130 0.0063 33 1 5.7726 2.7254 0.9031 34 1 3.3611 -0.1712 2.7914 35 1 5.0934 -0.0453 3.1802 36 1 4.2835 1.2661 2.2898 37 1 5.2512 -2.2413 2.1237 38 1 5.0476 -2.3626 0.3595 39 1 7.7720 0.3634 1.9141 40 1 6.9982 -0.7828 3.0931 41 1 9.4986 -1.2722 1.3176 42 1 9.1313 -1.9865 2.9479 43 1 10.6193 -4.7037 2.3784 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085930375.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:51 Heat of formation + Delta-G solvation = -0.479302 kcal Electronic energy + Delta-G solvation = -27854.077691 eV Core-core repulsion = 23903.140792 eV Total energy + Delta-G solvation = -3950.936899 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.36950 -39.42953 -39.02214 -37.65906 -37.00787 -35.10895 -32.30570 -31.98520 -30.87448 -28.63531 -27.89874 -27.78200 -26.44371 -24.55304 -23.29115 -23.13391 -22.33018 -19.90564 -19.39452 -18.97255 -17.88983 -17.53497 -17.32654 -16.50272 -16.42978 -15.93915 -15.50342 -15.23577 -15.02386 -14.91897 -14.59539 -13.98121 -13.76453 -13.45986 -13.33539 -13.07247 -12.72645 -12.59818 -12.31305 -12.08614 -12.05631 -11.99348 -11.85754 -11.34781 -11.01746 -10.83594 -10.67766 -10.41744 -10.26291 -9.83266 -9.72864 -9.62534 -9.42593 -9.36055 -9.18049 -8.73720 -8.32197 -6.79383 -5.70967 -3.02110 0.47793 0.84939 2.54697 2.67555 3.02693 3.23367 3.43632 3.44244 3.49027 3.50044 4.15171 4.41754 4.51243 4.54953 4.58978 4.69610 4.71493 4.98733 5.05574 5.10776 5.24867 5.25193 5.36426 5.50327 5.53654 5.57866 5.66511 5.85237 5.88074 6.02539 6.22378 6.31289 6.46052 6.63738 6.70826 6.76439 6.90780 7.18907 7.31368 7.46896 7.54382 7.58124 7.63467 8.04648 8.31989 9.11640 9.77868 10.68738 11.47064 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020645 B = 0.003369 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.921908 B = 8308.883482 C = 9166.356546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.298 6.298 3 C 0.214 3.786 4 C -0.275 4.275 5 C 0.170 3.830 6 N -0.523 5.523 7 C 0.381 3.619 8 O -0.466 6.466 9 C -0.219 4.219 10 C 0.577 3.423 11 O -0.517 6.517 12 N -0.598 5.598 13 C 0.083 3.917 14 C 0.121 3.879 15 C 0.130 3.870 16 H 0.050 0.950 17 C -0.160 4.160 18 C 0.166 3.834 19 N -0.602 5.602 20 C -0.221 4.221 21 H 0.079 0.921 22 C -0.008 4.008 23 N -0.921 5.921 24 Si 0.909 3.091 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.281 1.281 28 H 0.061 0.939 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.148 0.852 32 H 0.168 0.832 33 H 0.406 0.594 34 H 0.053 0.947 35 H 0.082 0.918 36 H 0.055 0.945 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.048 0.952 40 H 0.070 0.930 41 H 0.028 0.972 42 H 0.065 0.935 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.975 16.268 2.226 26.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.208 6.208 3 C 0.159 3.841 4 C -0.296 4.296 5 C 0.013 3.987 6 N -0.245 5.245 7 C 0.201 3.799 8 O -0.274 6.274 9 C -0.227 4.227 10 C 0.362 3.638 11 O -0.392 6.392 12 N -0.331 5.331 13 C -0.060 4.060 14 C -0.002 4.002 15 C 0.022 3.978 16 H 0.068 0.932 17 C -0.198 4.198 18 C 0.041 3.959 19 N -0.329 5.329 20 C -0.348 4.348 21 H 0.096 0.904 22 C -0.204 4.204 23 N -0.568 5.568 24 Si 0.739 3.261 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.206 1.206 28 H 0.080 0.920 29 H 0.126 0.874 30 H 0.080 0.920 31 H 0.166 0.834 32 H 0.185 0.815 33 H 0.266 0.734 34 H 0.072 0.928 35 H 0.101 0.899 36 H 0.074 0.926 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.089 0.911 41 H 0.045 0.955 42 H 0.083 0.917 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -20.167 16.158 1.111 25.865 hybrid contribution -0.489 -1.659 0.208 1.742 sum -20.656 14.500 1.318 25.271 Atomic orbital electron populations 1.23239 0.77053 1.04952 1.01792 1.86133 1.22375 1.25660 1.86597 1.19070 0.90238 0.85246 0.89563 1.22151 1.01879 0.92597 1.13021 1.22394 0.88668 0.97257 0.90333 1.67309 1.07236 1.32125 1.17867 1.18800 0.84841 0.85414 0.90819 1.84778 1.13572 1.95046 1.33965 1.20353 0.91816 0.95898 1.14599 1.17496 0.79385 0.82760 0.84119 1.90840 1.54942 1.62468 1.30935 1.47739 1.55359 1.24707 1.05301 1.21755 1.01336 0.96670 0.86270 1.21797 0.92330 0.83071 1.02957 1.22519 0.89905 0.89283 0.96090 0.93247 1.23782 1.00597 0.97205 0.98228 1.22113 0.90733 0.85858 0.97179 1.46125 1.21717 1.00017 1.65044 1.19029 1.00051 0.79886 1.35879 0.90354 1.24789 0.95836 0.97933 1.01840 1.69829 1.05786 1.33876 1.47350 0.86173 0.77266 0.85292 0.77364 1.21646 1.21741 1.20642 0.91993 0.87449 0.91955 0.83426 0.81542 0.73389 0.92844 0.89928 0.92589 0.89745 0.90768 0.93294 0.91096 0.95464 0.91678 0.93742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.84 101.05 0.99 1.14 16 2 O -0.30 -3.38 10.03 -18.23 -0.18 -3.56 16 3 C 0.21 2.44 6.74 -38.32 -0.26 2.18 16 4 C -0.28 -2.18 9.09 -39.34 -0.36 -2.53 16 5 C 0.17 1.39 11.15 -17.57 -0.20 1.20 16 6 N -0.52 -6.05 10.37 -13.06 -0.14 -6.18 16 7 C 0.38 4.95 7.18 -16.63 -0.12 4.83 16 8 O -0.47 -6.02 13.02 -17.98 -0.23 -6.26 16 9 C -0.22 -3.04 4.07 -104.57 -0.43 -3.46 16 10 C 0.58 9.92 6.23 -12.60 -0.08 9.85 16 11 O -0.52 -11.35 16.83 5.26 0.09 -11.26 16 12 N -0.60 -9.20 2.78 -182.92 -0.51 -9.70 16 13 C 0.08 0.90 9.97 59.85 0.60 1.50 16 14 C 0.12 2.27 5.22 -4.04 -0.02 2.25 16 15 C 0.13 2.78 4.53 -66.87 -0.30 2.48 16 16 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 17 C -0.16 -2.97 7.26 -25.79 -0.19 -3.16 16 18 C 0.17 3.99 7.38 -2.85 -0.02 3.97 16 19 N -0.60 -15.72 3.58 -169.76 -0.61 -16.32 16 20 C -0.22 -6.29 10.51 -15.06 -0.16 -6.45 16 21 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 22 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 23 N -0.92 -27.81 11.58 55.49 0.64 -27.17 16 24 Si 0.91 22.61 29.55 -169.99 -5.02 17.59 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 28 H 0.06 0.28 7.70 -51.93 -0.40 -0.12 16 29 H 0.11 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.24 7.71 -51.93 -0.40 -0.16 16 31 H 0.15 0.65 6.45 -52.49 -0.34 0.32 16 32 H 0.17 0.73 8.06 -52.48 -0.42 0.31 16 33 H 0.41 3.29 9.06 45.56 0.41 3.71 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.85 6.54 -51.93 -0.34 0.51 16 36 H 0.06 0.51 6.53 -51.93 -0.34 0.17 16 37 H 0.08 1.54 8.03 -51.93 -0.42 1.12 16 38 H 0.07 1.55 7.67 -51.93 -0.40 1.15 16 39 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 1.20 6.90 -51.93 -0.36 0.84 16 41 H 0.03 0.69 8.14 -51.92 -0.42 0.26 16 42 H 0.06 1.68 7.47 -51.93 -0.39 1.29 16 43 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 362.68 15.07 5.47 5.47 Total: -1.00 -38.29 362.68 -6.18 -44.46 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -5.05 Total: -0.52 kcal Atomic # 6 Polarization: 14.10 SS G_CDS: -0.63 Total: 13.47 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.61 Total: -59.38 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.33 Total: -21.08 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -38.29 -6.18 -44.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085930375.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.982 kcal (2) G-P(sol) polarization free energy of solvation -38.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds