Wall clock time and date at job start Tue Mar 31 2020 13:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35511 * 117.00206 * 2 1 4 4 C 1.39212 * 120.89802 * 0.02562 * 3 2 1 5 5 C 1.37897 * 119.38672 * 179.72584 * 4 3 2 6 6 N 1.32073 * 121.29448 * 359.97438 * 5 4 3 7 7 C 1.32183 * 121.97955 * 0.02562 * 6 5 4 8 8 O 1.35429 * 119.77844 * 180.02562 * 7 6 5 9 9 C 1.40290 * 120.44215 * 359.97438 * 7 6 5 10 10 C 1.47239 * 120.65158 * 179.97438 * 9 7 6 11 11 O 1.21619 * 120.00058 * 270.00401 * 10 9 7 12 12 N 1.34777 * 119.99413 * 89.99890 * 10 9 7 13 13 C 1.46498 * 120.00632 * 355.31641 * 12 10 9 14 14 C 1.46504 * 119.99366 * 175.30903 * 12 10 9 15 15 C 1.52999 * 109.47066 * 84.44662 * 14 12 10 16 16 H 1.09000 * 112.96267 * 294.05846 * 15 14 12 17 17 C 1.53944 * 113.76933 * 65.73082 * 15 14 12 18 18 C 1.53946 * 86.29036 * 137.90978 * 17 15 14 19 19 N 1.47575 * 113.77332 * 162.37410 * 15 14 12 20 20 C 1.36940 * 134.48953 * 41.06925 * 19 15 14 21 21 H 1.08001 * 120.00126 * 353.75630 * 20 19 15 22 22 C 1.38810 * 119.99782 * 173.75521 * 20 19 15 23 23 N 1.31619 * 120.00428 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99858 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47139 * 90.00357 * 24 22 20 26 26 H 1.48503 * 109.47295 * 210.00406 * 24 22 20 27 27 H 1.48500 * 109.47332 * 330.00552 * 24 22 20 28 28 H 1.08998 * 109.46725 * 59.99763 * 1 2 3 29 29 H 1.08998 * 109.46992 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47316 * 300.00200 * 1 2 3 31 31 H 1.08000 * 120.30598 * 359.73909 * 4 3 2 32 32 H 1.08009 * 119.35131 * 179.97438 * 5 4 3 33 33 H 0.96701 * 114.00082 * 90.00054 * 8 7 6 34 34 H 1.09001 * 109.47445 * 89.99604 * 13 12 10 35 35 H 1.08997 * 109.47194 * 209.99496 * 13 12 10 36 36 H 1.09000 * 109.46708 * 329.99854 * 13 12 10 37 37 H 1.09004 * 109.46748 * 204.44181 * 14 12 10 38 38 H 1.08996 * 109.47739 * 324.44717 * 14 12 10 39 39 H 1.09007 * 113.74661 * 252.25559 * 17 15 14 40 40 H 1.09000 * 113.74385 * 23.46078 * 17 15 14 41 41 H 1.09008 * 113.76657 * 90.69563 * 18 17 15 42 42 H 1.08994 * 113.77206 * 221.97570 * 18 17 15 43 43 H 0.96996 * 120.00211 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 1.3044 2.3867 0.0005 5 6 1.9627 3.5984 0.0063 6 7 3.2819 3.6625 0.0118 7 6 4.0355 2.5765 0.0116 8 8 5.3847 2.6941 0.0179 9 6 3.4471 1.3030 0.0059 10 6 4.2822 0.0903 0.0051 11 8 4.6306 -0.4075 -1.0484 12 7 4.6605 -0.4680 1.1720 13 6 4.3284 0.1873 2.4394 14 6 5.4039 -1.7305 1.1729 15 6 6.8946 -1.4447 0.9811 16 1 7.1248 -1.0266 0.0011 17 6 7.5341 -0.6738 2.1502 18 6 8.7282 -1.6336 1.9988 19 7 7.7704 -2.5671 1.3697 20 6 7.7158 -3.9262 1.2111 21 1 6.8347 -4.3857 0.7881 22 6 8.7931 -4.7134 1.5943 23 7 9.8667 -4.1536 2.1103 24 14 8.7184 -6.5674 1.3787 25 1 9.2473 -6.9318 0.0398 26 1 9.5387 -7.2214 2.4298 27 1 7.3099 -7.0230 1.4952 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 0.2250 2.3529 -0.0033 32 1 1.3882 4.5130 0.0063 33 1 5.7726 2.7254 0.9031 34 1 3.3611 -0.1712 2.7914 35 1 5.0934 -0.0453 3.1802 36 1 4.2835 1.2661 2.2898 37 1 5.2512 -2.2413 2.1237 38 1 5.0476 -2.3626 0.3595 39 1 7.7720 0.3634 1.9141 40 1 6.9982 -0.7828 3.0931 41 1 9.4986 -1.2722 1.3176 42 1 9.1313 -1.9865 2.9479 43 1 10.6193 -4.7037 2.3784 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085930375.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:50 Heat of formation + Delta-G solvation = -32.694933 kcal Electronic energy + Delta-G solvation = -27855.474665 eV Core-core repulsion = 23903.140792 eV Total energy + Delta-G solvation = -3952.333874 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.23882 -40.67431 -39.86573 -39.35937 -37.83947 -36.49096 -34.25359 -33.05734 -31.65315 -29.97466 -29.84698 -28.43926 -27.54177 -25.63464 -25.28673 -23.91352 -23.81445 -21.16771 -20.77174 -20.18529 -18.84853 -18.60550 -18.38296 -18.13698 -17.55858 -16.95857 -16.78730 -16.51862 -16.28236 -15.84878 -15.72904 -15.50425 -15.07936 -14.89322 -14.23039 -14.16188 -14.00630 -13.87995 -13.58610 -13.46611 -13.30451 -12.93616 -12.90948 -12.59247 -12.54116 -12.46729 -12.41174 -12.26109 -11.83539 -11.56815 -11.39948 -11.27561 -10.86002 -10.58486 -10.10243 -10.02669 -9.72492 -8.90111 -7.91445 -5.24143 -0.29162 0.08696 1.42048 1.43075 1.46303 1.54091 1.87035 1.89879 2.44262 2.48740 2.68010 3.28020 3.32432 3.47315 3.70078 3.78849 3.86911 3.93305 4.13602 4.23202 4.26028 4.29820 4.35998 4.37198 4.50179 4.52575 4.62182 4.72560 4.73945 4.82340 4.86913 4.97316 4.99206 5.04562 5.20303 5.27059 5.42623 5.55687 5.70822 5.93767 6.06915 6.30125 6.47598 6.81719 6.92729 7.04546 7.60590 8.57752 9.26363 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.020645 B = 0.003369 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.921908 B = 8308.883482 C = 9166.356546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.330 6.330 3 C 0.207 3.793 4 C -0.256 4.256 5 C 0.176 3.824 6 N -0.540 5.540 7 C 0.374 3.626 8 O -0.487 6.487 9 C -0.248 4.248 10 C 0.578 3.422 11 O -0.582 6.582 12 N -0.591 5.591 13 C 0.078 3.922 14 C 0.138 3.862 15 C 0.130 3.870 16 H 0.020 0.980 17 C -0.120 4.120 18 C 0.158 3.842 19 N -0.629 5.629 20 C -0.233 4.233 21 H 0.078 0.922 22 C -0.065 4.065 23 N -0.953 5.953 24 Si 0.975 3.025 25 H -0.292 1.292 26 H -0.290 1.290 27 H -0.266 1.266 28 H 0.077 0.923 29 H 0.113 0.887 30 H 0.089 0.911 31 H 0.190 0.810 32 H 0.211 0.789 33 H 0.422 0.578 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.042 0.958 39 H 0.083 0.917 40 H 0.098 0.902 41 H 0.007 0.993 42 H 0.043 0.957 43 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.300 18.176 3.540 30.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.241 6.241 3 C 0.152 3.848 4 C -0.277 4.277 5 C 0.021 3.979 6 N -0.263 5.263 7 C 0.195 3.805 8 O -0.298 6.298 9 C -0.255 4.255 10 C 0.365 3.635 11 O -0.462 6.462 12 N -0.323 5.323 13 C -0.063 4.063 14 C 0.014 3.986 15 C 0.022 3.978 16 H 0.037 0.963 17 C -0.158 4.158 18 C 0.033 3.967 19 N -0.355 5.355 20 C -0.361 4.361 21 H 0.096 0.904 22 C -0.258 4.258 23 N -0.601 5.601 24 Si 0.803 3.197 25 H -0.219 1.219 26 H -0.216 1.216 27 H -0.191 1.191 28 H 0.096 0.904 29 H 0.131 0.869 30 H 0.107 0.893 31 H 0.207 0.793 32 H 0.228 0.772 33 H 0.284 0.716 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.061 0.939 39 H 0.101 0.899 40 H 0.116 0.884 41 H 0.025 0.975 42 H 0.062 0.938 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -23.545 18.109 2.475 29.807 hybrid contribution 0.426 -2.178 -0.237 2.232 sum -23.119 15.931 2.238 28.165 Atomic orbital electron populations 1.23593 0.74429 1.06198 1.03811 1.86099 1.25208 1.26236 1.86517 1.19273 0.89567 0.86517 0.89454 1.22543 1.03643 0.90854 1.10631 1.23209 0.87727 0.99113 0.87834 1.67407 1.08833 1.31284 1.18764 1.18833 0.84812 0.85513 0.91373 1.84730 1.14287 1.95110 1.35694 1.20163 0.92747 0.94361 1.18273 1.18080 0.78750 0.83279 0.83368 1.90793 1.57480 1.64651 1.33227 1.47750 1.54146 1.23489 1.06871 1.22041 1.02467 0.97779 0.84039 1.21348 0.90709 0.84529 1.02031 1.22548 0.91261 0.88131 0.95815 0.96291 1.23533 0.96719 0.97577 0.97973 1.22106 0.91910 0.87246 0.95487 1.46546 1.23316 1.00228 1.65447 1.19374 1.00075 0.81614 1.35078 0.90448 1.25612 0.95629 1.02406 1.02126 1.70005 1.06327 1.35212 1.48591 0.85132 0.77815 0.79936 0.76797 1.21909 1.21593 1.19104 0.90433 0.86860 0.89297 0.79321 0.77205 0.71584 0.91203 0.88847 0.90344 0.88755 0.93943 0.89879 0.88388 0.97481 0.93843 0.94231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.84 113.37 1.12 1.23 16 2 O -0.33 -6.97 10.03 -88.13 -0.88 -7.86 16 3 C 0.21 4.29 6.74 23.09 0.16 4.45 16 4 C -0.26 -2.97 9.09 22.42 0.20 -2.77 16 5 C 0.18 2.15 11.15 84.58 0.94 3.09 16 6 N -0.54 -11.12 10.37 -308.27 -3.20 -14.31 16 7 C 0.37 9.31 7.18 85.14 0.61 9.92 16 8 O -0.49 -12.46 13.02 -87.25 -1.14 -13.60 16 9 C -0.25 -6.69 4.07 -19.83 -0.08 -6.77 16 10 C 0.58 20.29 6.23 86.61 0.54 20.83 16 11 O -0.58 -27.10 16.83 -4.09 -0.07 -27.16 16 12 N -0.59 -18.00 2.78 -850.89 -2.37 -20.37 16 13 C 0.08 1.51 9.97 127.77 1.27 2.79 16 14 C 0.14 5.27 5.22 86.38 0.45 5.72 16 15 C 0.13 5.69 4.53 45.09 0.20 5.90 16 16 H 0.02 0.97 8.14 -2.39 -0.02 0.96 16 17 C -0.12 -4.35 7.26 31.25 0.23 -4.12 16 18 C 0.16 7.76 7.38 86.44 0.64 8.40 16 19 N -0.63 -33.78 3.58 -690.99 -2.47 -36.25 16 20 C -0.23 -13.65 10.51 84.03 0.88 -12.77 16 21 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 22 C -0.06 -3.82 5.50 84.86 0.47 -3.35 16 23 N -0.95 -59.16 11.58 21.65 0.25 -58.91 16 24 Si 0.98 47.40 29.55 68.60 2.03 49.43 16 25 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 26 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 27 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 28 H 0.08 0.44 7.70 -2.39 -0.02 0.42 16 29 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.09 0.30 7.71 -2.39 -0.02 0.28 16 31 H 0.19 0.54 6.45 -2.91 -0.02 0.53 16 32 H 0.21 0.62 8.06 -2.91 -0.02 0.60 16 33 H 0.42 6.47 9.06 -74.06 -0.67 5.80 16 34 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.09 1.62 6.54 -2.39 -0.02 1.60 16 36 H 0.08 1.20 6.53 -2.39 -0.02 1.19 16 37 H 0.09 3.40 8.03 -2.38 -0.02 3.38 16 38 H 0.04 1.88 7.67 -2.39 -0.02 1.86 16 39 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 40 H 0.10 3.05 6.90 -2.39 -0.02 3.04 16 41 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 42 H 0.04 2.30 7.47 -2.39 -0.02 2.29 16 43 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -89.54 362.68 0.16 -89.38 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: 0.38 Total: 7.11 kcal Atomic # 6 Polarization: 24.91 SS G_CDS: 7.63 Total: 32.54 kcal Atomic # 7 Polarization: -122.06 SS G_CDS: -7.79 Total: -129.84 kcal Atomic # 8 Polarization: -46.53 SS G_CDS: -2.09 Total: -48.62 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.43 kcal Total: -89.54 0.16 -89.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085930375.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.686 kcal (2) G-P(sol) polarization free energy of solvation -89.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds