Wall clock time and date at job start Tue Mar 31 2020 13:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35505 * 116.99735 * 2 1 4 4 C 1.39209 * 120.90108 * 0.02562 * 3 2 1 5 5 C 1.37905 * 119.39453 * 179.97438 * 4 3 2 6 6 N 1.32080 * 121.28481 * 0.02562 * 5 4 3 7 7 C 1.32186 * 121.98108 * 359.65313 * 6 5 4 8 8 O 1.35430 * 119.77445 * 180.33797 * 7 6 5 9 9 C 1.40288 * 120.44428 * 0.63103 * 7 6 5 10 10 C 1.47223 * 120.65251 * 179.68019 * 9 7 6 11 11 O 1.21627 * 120.00276 * 269.72512 * 10 9 7 12 12 N 1.34775 * 120.00077 * 89.72859 * 10 9 7 13 13 C 1.46496 * 120.00182 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47397 * 179.97438 * 13 12 10 15 15 H 1.09001 * 112.84576 * 316.19375 * 14 13 12 16 16 C 1.53955 * 113.66714 * 87.43737 * 14 13 12 17 17 C 1.53790 * 87.01854 * 139.93614 * 16 14 13 18 18 H 1.09000 * 113.61139 * 89.23141 * 17 16 14 19 19 N 1.46499 * 113.61381 * 220.04853 * 17 16 14 20 20 C 1.36939 * 119.99933 * 254.41150 * 19 17 16 21 21 H 1.08001 * 119.99700 * 359.72658 * 20 19 17 22 22 C 1.38810 * 120.00095 * 179.71972 * 20 19 17 23 23 N 1.31624 * 119.99740 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00044 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47201 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47080 * 120.00466 * 24 22 20 27 27 H 1.48506 * 109.47018 * 240.00565 * 24 22 20 28 28 C 1.53778 * 113.61802 * 185.00243 * 14 13 12 29 29 H 1.09002 * 109.46885 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47353 * 299.99703 * 1 2 3 31 31 H 1.09000 * 109.47775 * 60.00234 * 1 2 3 32 32 H 1.08002 * 120.30389 * 359.97438 * 4 3 2 33 33 H 1.08001 * 119.35764 * 179.97438 * 5 4 3 34 34 H 0.96698 * 114.00088 * 270.28619 * 8 7 6 35 35 H 0.97001 * 119.99642 * 359.97438 * 12 10 9 36 36 H 1.09000 * 109.47568 * 59.99366 * 13 12 10 37 37 H 1.09001 * 109.47133 * 299.99672 * 13 12 10 38 38 H 1.08994 * 113.61397 * 25.41564 * 16 14 13 39 39 H 1.09000 * 113.66822 * 254.46162 * 16 14 13 40 40 H 0.97001 * 119.99790 * 74.13124 * 19 17 16 41 41 H 0.96998 * 119.99409 * 179.97438 * 23 22 20 42 42 H 1.09000 * 113.62078 * 105.46704 * 28 14 13 43 43 H 1.09009 * 113.68675 * 334.57210 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 1.3043 2.3866 0.0005 5 6 1.9624 3.5985 0.0011 6 7 3.2816 3.6626 0.0006 7 6 4.0353 2.5767 0.0063 8 8 5.3845 2.6944 0.0125 9 6 3.4471 1.3031 -0.0001 10 6 4.2821 0.0906 -0.0008 11 8 4.6270 -0.4097 -1.0543 12 7 4.6644 -0.4650 1.1661 13 6 5.4958 -1.6712 1.1654 14 6 5.7856 -2.0917 2.6077 15 1 6.0505 -1.2508 3.2486 16 6 4.7091 -3.0121 3.2112 17 6 5.8603 -3.8006 3.8580 18 1 6.1455 -3.4285 4.8420 19 7 5.6638 -5.2521 3.8336 20 6 5.3208 -5.9160 4.9812 21 1 5.1995 -5.3701 5.9051 22 6 5.1289 -7.2906 4.9569 23 7 5.2771 -7.9559 3.8309 24 14 4.6618 -8.1962 6.5224 25 1 4.5587 -7.2272 7.6429 26 1 3.3535 -8.8724 6.3315 27 1 5.7012 -9.2090 6.8373 28 6 6.7544 -3.2807 2.7199 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3635 0.5138 -0.8900 32 1 0.2248 2.3528 0.0005 33 1 1.3879 4.5130 0.0010 34 1 5.7801 2.7312 -0.8691 35 1 4.3896 -0.0658 2.0064 36 1 6.4349 -1.4650 0.6518 37 1 4.9693 -2.4751 0.6511 38 1 4.1542 -3.5820 2.4661 39 1 4.0618 -2.5138 3.9328 40 1 5.7726 -5.7424 3.0037 41 1 5.1433 -8.9165 3.8140 42 1 7.7558 -2.9989 3.0454 43 1 6.7607 -3.9250 1.8406 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086255175.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:14 Heat of formation + Delta-G solvation = -40.931634 kcal Electronic energy + Delta-G solvation = -26416.127430 eV Core-core repulsion = 22463.436386 eV Total energy + Delta-G solvation = -3952.691044 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.43625 -39.49941 -39.16691 -38.30299 -37.15350 -34.64148 -33.29221 -32.28726 -31.01329 -30.19563 -28.06792 -27.37823 -25.07785 -24.80796 -23.71128 -23.25788 -21.12562 -20.91933 -19.62449 -19.09984 -18.10609 -17.87362 -17.42083 -17.01394 -16.56532 -16.01503 -15.68939 -15.34578 -15.10072 -14.98459 -14.70559 -14.46830 -13.99554 -13.59680 -13.51110 -13.23573 -13.05159 -12.82741 -12.24650 -12.07594 -11.96503 -11.88338 -11.78910 -11.35495 -11.23216 -10.85269 -10.62429 -10.43847 -10.17589 -10.08781 -9.80334 -9.76271 -9.50426 -9.46771 -9.38605 -9.00538 -8.86301 -6.95245 -5.77866 -3.06509 0.33017 0.72807 2.43851 2.45445 2.97278 3.08253 3.42189 3.42731 3.47903 3.50260 4.07949 4.34214 4.48080 4.48942 4.58659 4.66008 4.67116 4.94211 4.99930 5.03498 5.07356 5.14668 5.26349 5.40495 5.47866 5.54312 5.73877 5.84705 5.87301 5.95761 6.10682 6.27934 6.33266 6.38541 6.47017 6.60369 6.61688 6.85128 7.01364 7.13872 7.39904 7.45285 7.70058 8.11690 8.40869 9.51875 10.10546 10.44832 11.44676 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018762 B = 0.002469 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.983267 B =11337.484236 C =12115.927081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.297 6.297 3 C 0.218 3.782 4 C -0.275 4.275 5 C 0.173 3.827 6 N -0.524 5.524 7 C 0.383 3.617 8 O -0.472 6.472 9 C -0.231 4.231 10 C 0.581 3.419 11 O -0.535 6.535 12 N -0.708 5.708 13 C 0.132 3.868 14 C -0.127 4.127 15 H 0.089 0.911 16 C -0.160 4.160 17 C 0.165 3.835 18 H 0.074 0.926 19 N -0.713 5.713 20 C -0.242 4.242 21 H 0.071 0.929 22 C -0.014 4.014 23 N -0.932 5.932 24 Si 0.907 3.093 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.291 1.291 28 C -0.141 4.141 29 H 0.110 0.890 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.150 0.850 33 H 0.169 0.831 34 H 0.410 0.590 35 H 0.401 0.599 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.053 0.947 40 H 0.385 0.615 41 H 0.255 0.745 42 H 0.062 0.938 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.736 24.861 -9.240 27.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.206 6.206 3 C 0.162 3.838 4 C -0.296 4.296 5 C 0.018 3.982 6 N -0.247 5.247 7 C 0.204 3.796 8 O -0.280 6.280 9 C -0.238 4.238 10 C 0.365 3.635 11 O -0.411 6.411 12 N -0.357 5.357 13 C 0.010 3.990 14 C -0.147 4.147 15 H 0.107 0.893 16 C -0.201 4.201 17 C 0.053 3.947 18 H 0.092 0.908 19 N -0.351 5.351 20 C -0.373 4.373 21 H 0.089 0.911 22 C -0.210 4.210 23 N -0.580 5.580 24 Si 0.738 3.262 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.218 1.218 28 C -0.180 4.180 29 H 0.128 0.872 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.167 0.833 33 H 0.186 0.814 34 H 0.270 0.730 35 H 0.235 0.765 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.097 0.903 39 H 0.072 0.928 40 H 0.219 0.781 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.035 24.886 -9.206 27.725 hybrid contribution -1.050 -1.130 0.456 1.608 sum -9.085 23.756 -8.750 26.897 Atomic orbital electron populations 1.23284 0.76702 1.05274 1.01862 1.86137 1.22684 1.25471 1.86340 1.19115 0.90286 0.85400 0.88954 1.22196 1.02082 0.92566 1.12775 1.22431 0.88622 0.97354 0.89838 1.67317 1.07302 1.32098 1.17967 1.18787 0.84786 0.85420 0.90638 1.84674 1.13683 1.95092 1.34584 1.20350 0.91856 0.95636 1.15993 1.17453 0.79214 0.82491 0.84314 1.90819 1.56103 1.62993 1.31230 1.45975 1.52693 1.29071 1.08008 1.21487 0.94238 0.85890 0.97429 1.22676 1.00209 0.97419 0.94357 0.89324 1.23975 0.97876 0.97929 1.00369 1.21525 0.92468 0.85351 0.95314 0.90762 1.42424 1.81792 1.00900 1.10024 1.19345 1.38858 0.90243 0.88859 0.91072 1.24772 1.02652 0.96554 0.97058 1.69676 1.56161 1.07398 1.24808 0.86121 0.77711 0.79781 0.82601 1.20548 1.21890 1.21845 1.23414 0.97640 0.95917 1.01063 0.87179 0.91794 0.91921 0.83254 0.81416 0.72963 0.76517 0.91524 0.91041 0.90325 0.92843 0.78066 0.93518 0.91931 0.90061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.83 101.05 0.99 1.13 16 2 O -0.30 -3.16 10.03 -18.21 -0.18 -3.34 16 3 C 0.22 2.24 6.74 -38.32 -0.26 1.98 16 4 C -0.28 -1.93 9.09 -39.34 -0.36 -2.29 16 5 C 0.17 1.24 11.15 -17.57 -0.20 1.05 16 6 N -0.52 -5.32 10.37 -13.06 -0.14 -5.46 16 7 C 0.38 4.23 7.77 -16.63 -0.13 4.10 16 8 O -0.47 -4.79 13.02 -17.98 -0.23 -5.02 16 9 C -0.23 -2.76 5.66 -104.58 -0.59 -3.35 16 10 C 0.58 8.33 6.42 -12.61 -0.08 8.24 16 11 O -0.53 -9.48 17.11 5.25 0.09 -9.39 16 12 N -0.71 -9.17 5.55 -61.45 -0.34 -9.51 16 13 C 0.13 1.85 5.51 -4.04 -0.02 1.82 16 14 C -0.13 -1.77 3.75 -89.72 -0.34 -2.11 16 15 H 0.09 1.10 8.14 -51.93 -0.42 0.67 16 16 C -0.16 -2.72 7.45 -25.82 -0.19 -2.91 16 17 C 0.17 3.24 4.47 -67.11 -0.30 2.94 16 18 H 0.07 1.44 8.11 -51.93 -0.42 1.02 16 19 N -0.71 -17.93 5.41 -52.63 -0.28 -18.21 16 20 C -0.24 -6.72 9.97 -15.06 -0.15 -6.87 16 21 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 22 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 23 N -0.93 -28.29 13.06 55.49 0.72 -27.57 16 24 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 C -0.14 -2.28 7.39 -25.92 -0.19 -2.47 16 29 H 0.11 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.26 7.71 -51.93 -0.40 -0.14 16 31 H 0.06 0.26 7.71 -51.93 -0.40 -0.14 16 32 H 0.15 0.57 6.45 -52.49 -0.34 0.23 16 33 H 0.17 0.59 8.06 -52.49 -0.42 0.17 16 34 H 0.41 2.49 9.06 45.56 0.41 2.90 16 35 H 0.40 4.49 8.46 -40.82 -0.35 4.14 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 1.12 7.85 -51.93 -0.41 0.72 16 38 H 0.08 1.47 7.90 -51.93 -0.41 1.06 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.39 10.31 7.91 -40.82 -0.32 9.99 16 41 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.08 1.38 8.07 -51.92 -0.42 0.96 16 LS Contribution 370.26 15.07 5.58 5.58 Total: -1.00 -36.11 370.26 -6.85 -42.97 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -5.13 Total: 11.85 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: -1.91 Total: 0.75 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: -0.04 Total: -60.75 kcal Atomic # 8 Polarization: -17.43 SS G_CDS: -0.33 Total: -17.75 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.11 -6.85 -42.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086255175.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.034 kcal (2) G-P(sol) polarization free energy of solvation -36.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds