Wall clock time and date at job start Tue Mar 31 2020 13:47:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35505 * 116.99735 * 2 1 4 4 C 1.39209 * 120.90108 * 0.02562 * 3 2 1 5 5 C 1.37905 * 119.39453 * 179.97438 * 4 3 2 6 6 N 1.32080 * 121.28481 * 0.02562 * 5 4 3 7 7 C 1.32186 * 121.98108 * 359.65313 * 6 5 4 8 8 O 1.35430 * 119.77445 * 180.33797 * 7 6 5 9 9 C 1.40288 * 120.44428 * 0.63103 * 7 6 5 10 10 C 1.47223 * 120.65251 * 179.68019 * 9 7 6 11 11 O 1.21627 * 120.00276 * 269.72512 * 10 9 7 12 12 N 1.34775 * 120.00077 * 89.72859 * 10 9 7 13 13 C 1.46496 * 120.00182 * 180.02562 * 12 10 9 14 14 C 1.52999 * 109.47397 * 179.97438 * 13 12 10 15 15 H 1.09001 * 112.84576 * 316.19375 * 14 13 12 16 16 C 1.53955 * 113.66714 * 87.43737 * 14 13 12 17 17 C 1.53790 * 87.01854 * 139.93614 * 16 14 13 18 18 H 1.09000 * 113.61139 * 89.23141 * 17 16 14 19 19 N 1.46499 * 113.61381 * 220.04853 * 17 16 14 20 20 C 1.36939 * 119.99933 * 254.41150 * 19 17 16 21 21 H 1.08001 * 119.99700 * 359.72658 * 20 19 17 22 22 C 1.38810 * 120.00095 * 179.71972 * 20 19 17 23 23 N 1.31624 * 119.99740 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00044 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47201 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47080 * 120.00466 * 24 22 20 27 27 H 1.48506 * 109.47018 * 240.00565 * 24 22 20 28 28 C 1.53778 * 113.61802 * 185.00243 * 14 13 12 29 29 H 1.09002 * 109.46885 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47353 * 299.99703 * 1 2 3 31 31 H 1.09000 * 109.47775 * 60.00234 * 1 2 3 32 32 H 1.08002 * 120.30389 * 359.97438 * 4 3 2 33 33 H 1.08001 * 119.35764 * 179.97438 * 5 4 3 34 34 H 0.96698 * 114.00088 * 270.28619 * 8 7 6 35 35 H 0.97001 * 119.99642 * 359.97438 * 12 10 9 36 36 H 1.09000 * 109.47568 * 59.99366 * 13 12 10 37 37 H 1.09001 * 109.47133 * 299.99672 * 13 12 10 38 38 H 1.08994 * 113.61397 * 25.41564 * 16 14 13 39 39 H 1.09000 * 113.66822 * 254.46162 * 16 14 13 40 40 H 0.97001 * 119.99790 * 74.13124 * 19 17 16 41 41 H 0.96998 * 119.99409 * 179.97438 * 23 22 20 42 42 H 1.09000 * 113.62078 * 105.46704 * 28 14 13 43 43 H 1.09009 * 113.68675 * 334.57210 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0441 1.2074 0.0000 4 6 1.3043 2.3866 0.0005 5 6 1.9624 3.5985 0.0011 6 7 3.2816 3.6626 0.0006 7 6 4.0353 2.5767 0.0063 8 8 5.3845 2.6944 0.0125 9 6 3.4471 1.3031 -0.0001 10 6 4.2821 0.0906 -0.0008 11 8 4.6270 -0.4097 -1.0543 12 7 4.6644 -0.4650 1.1661 13 6 5.4958 -1.6712 1.1654 14 6 5.7856 -2.0917 2.6077 15 1 6.0505 -1.2508 3.2486 16 6 4.7091 -3.0121 3.2112 17 6 5.8603 -3.8006 3.8580 18 1 6.1455 -3.4285 4.8420 19 7 5.6638 -5.2521 3.8336 20 6 5.3208 -5.9160 4.9812 21 1 5.1995 -5.3701 5.9051 22 6 5.1289 -7.2906 4.9569 23 7 5.2771 -7.9559 3.8309 24 14 4.6618 -8.1962 6.5224 25 1 4.5587 -7.2272 7.6429 26 1 3.3535 -8.8724 6.3315 27 1 5.7012 -9.2090 6.8373 28 6 6.7544 -3.2807 2.7199 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3635 0.5138 -0.8900 32 1 0.2248 2.3528 0.0005 33 1 1.3879 4.5130 0.0010 34 1 5.7801 2.7312 -0.8691 35 1 4.3896 -0.0658 2.0064 36 1 6.4349 -1.4650 0.6518 37 1 4.9693 -2.4751 0.6511 38 1 4.1542 -3.5820 2.4661 39 1 4.0618 -2.5138 3.9328 40 1 5.7726 -5.7424 3.0037 41 1 5.1433 -8.9165 3.8140 42 1 7.7558 -2.9989 3.0454 43 1 6.7607 -3.9250 1.8406 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086255175.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:14 Heat of formation + Delta-G solvation = -72.147067 kcal Electronic energy + Delta-G solvation = -26417.481032 eV Core-core repulsion = 22463.436386 eV Total energy + Delta-G solvation = -3954.044647 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.17277 -40.60532 -39.91721 -39.60473 -37.83888 -36.08127 -35.03681 -33.09919 -32.15355 -31.60055 -28.87441 -28.37755 -26.48131 -26.08224 -25.21325 -23.92134 -22.53628 -21.98189 -20.59584 -20.25329 -19.17274 -18.84462 -18.60997 -18.18513 -17.48098 -16.92083 -16.70108 -16.43501 -16.24975 -15.97880 -15.72123 -15.66485 -15.33401 -15.04548 -14.71363 -14.39935 -14.12444 -13.66591 -13.42590 -13.25174 -13.04604 -12.94226 -12.93394 -12.67026 -12.58260 -12.50918 -12.19036 -12.06602 -11.71807 -11.57788 -11.35461 -11.07434 -10.83792 -10.58032 -10.18859 -10.16133 -10.06636 -8.98231 -7.94770 -5.23234 -0.33493 0.05381 1.38528 1.47056 1.47851 1.57981 1.85254 2.06831 2.39298 2.56470 2.73585 3.36527 3.43739 3.66896 3.71406 3.74327 3.77012 3.89761 3.91613 4.23806 4.25841 4.30368 4.33682 4.35322 4.41153 4.47847 4.53711 4.71213 4.73199 4.83354 4.95826 4.96787 5.02559 5.18946 5.22666 5.29997 5.39625 5.52077 5.71219 6.02536 6.27728 6.38998 6.40312 6.77544 7.05948 7.33049 8.10964 8.33156 9.29072 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.018762 B = 0.002469 C = 0.002310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.983267 B =11337.484236 C =12115.927081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.329 6.329 3 C 0.206 3.794 4 C -0.260 4.260 5 C 0.178 3.822 6 N -0.542 5.542 7 C 0.379 3.621 8 O -0.484 6.484 9 C -0.258 4.258 10 C 0.583 3.417 11 O -0.579 6.579 12 N -0.700 5.700 13 C 0.139 3.861 14 C -0.097 4.097 15 H 0.119 0.881 16 C -0.153 4.153 17 C 0.145 3.855 18 H 0.081 0.919 19 N -0.730 5.730 20 C -0.240 4.240 21 H 0.079 0.921 22 C -0.081 4.081 23 N -0.973 5.973 24 Si 0.973 3.027 25 H -0.264 1.264 26 H -0.295 1.295 27 H -0.294 1.294 28 C -0.134 4.134 29 H 0.111 0.889 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.187 0.813 33 H 0.210 0.790 34 H 0.423 0.577 35 H 0.411 0.589 36 H 0.070 0.930 37 H 0.048 0.952 38 H 0.055 0.945 39 H 0.065 0.935 40 H 0.372 0.628 41 H 0.250 0.750 42 H 0.081 0.919 43 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.143 27.641 -8.148 30.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 O -0.239 6.239 3 C 0.151 3.849 4 C -0.281 4.281 5 C 0.023 3.977 6 N -0.265 5.265 7 C 0.199 3.801 8 O -0.295 6.295 9 C -0.266 4.266 10 C 0.368 3.632 11 O -0.459 6.459 12 N -0.349 5.349 13 C 0.015 3.985 14 C -0.116 4.116 15 H 0.137 0.863 16 C -0.194 4.194 17 C 0.035 3.965 18 H 0.099 0.901 19 N -0.367 5.367 20 C -0.372 4.372 21 H 0.097 0.903 22 C -0.272 4.272 23 N -0.624 5.624 24 Si 0.803 3.197 25 H -0.188 1.188 26 H -0.222 1.222 27 H -0.222 1.222 28 C -0.173 4.173 29 H 0.130 0.870 30 H 0.103 0.897 31 H 0.100 0.900 32 H 0.204 0.796 33 H 0.226 0.774 34 H 0.286 0.714 35 H 0.247 0.753 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.084 0.916 40 H 0.204 0.796 41 H 0.059 0.941 42 H 0.099 0.901 43 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -9.452 27.745 -8.081 30.405 hybrid contribution -0.673 -1.890 0.091 2.008 sum -10.125 25.856 -7.990 28.894 Atomic orbital electron populations 1.23589 0.74494 1.06173 1.03812 1.86095 1.25148 1.26255 1.86432 1.19347 0.89929 0.86424 0.89188 1.22555 1.03676 0.91075 1.10757 1.23191 0.87845 0.99023 0.87632 1.67416 1.08751 1.31552 1.18794 1.18836 0.85030 0.85399 0.90852 1.84617 1.13814 1.95097 1.35960 1.20261 0.92627 0.94706 1.18958 1.17856 0.78695 0.82893 0.83712 1.90781 1.57871 1.64545 1.32689 1.45891 1.52155 1.28461 1.08412 1.21300 0.94273 0.85781 0.97132 1.22504 0.97433 0.97155 0.94502 0.86309 1.23757 0.97726 0.97967 0.99930 1.21938 0.94867 0.82732 0.96951 0.90148 1.42642 1.82217 1.03124 1.08766 1.19761 1.36975 0.90631 0.89831 0.90318 1.25606 1.03910 0.97628 1.00103 1.69838 1.58319 1.07220 1.26980 0.85066 0.76772 0.78462 0.79436 1.18779 1.22233 1.22151 1.23296 0.98604 0.96306 0.99092 0.87025 0.89717 0.89971 0.79622 0.77350 0.71441 0.75287 0.91189 0.93329 0.92617 0.91611 0.79632 0.94105 0.90061 0.91298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.83 113.37 1.11 1.24 16 2 O -0.33 -6.73 10.03 -88.06 -0.88 -7.61 16 3 C 0.21 3.96 6.74 23.09 0.16 4.11 16 4 C -0.26 -2.82 9.09 22.42 0.20 -2.62 16 5 C 0.18 1.96 11.15 84.58 0.94 2.90 16 6 N -0.54 -9.94 10.37 -308.27 -3.20 -13.14 16 7 C 0.38 8.05 7.77 85.14 0.66 8.71 16 8 O -0.48 -9.66 13.02 -87.26 -1.14 -10.79 16 9 C -0.26 -6.06 5.66 -19.83 -0.11 -6.17 16 10 C 0.58 16.92 6.42 86.60 0.56 17.47 16 11 O -0.58 -21.29 17.11 -4.12 -0.07 -21.36 16 12 N -0.70 -17.83 5.55 -466.58 -2.59 -20.43 16 13 C 0.14 3.83 5.51 86.38 0.48 4.31 16 14 C -0.10 -2.55 3.75 -10.21 -0.04 -2.58 16 15 H 0.12 2.52 8.14 -2.39 -0.02 2.50 16 16 C -0.15 -5.09 7.45 31.18 0.23 -4.85 16 17 C 0.14 5.57 4.47 45.52 0.20 5.77 16 18 H 0.08 3.00 8.11 -2.39 -0.02 2.98 16 19 N -0.73 -37.23 5.41 -320.43 -1.73 -38.96 16 20 C -0.24 -13.38 9.97 84.03 0.84 -12.55 16 21 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 22 C -0.08 -4.68 5.50 84.86 0.47 -4.21 16 23 N -0.97 -60.56 13.06 21.65 0.28 -60.27 16 24 Si 0.97 46.39 29.55 68.60 2.03 48.42 16 25 H -0.26 -11.67 7.11 99.48 0.71 -10.97 16 26 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 27 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 28 C -0.13 -4.20 7.39 31.12 0.23 -3.97 16 29 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 0.44 7.71 -2.39 -0.02 0.42 16 31 H 0.08 0.44 7.71 -2.39 -0.02 0.42 16 32 H 0.19 0.54 6.45 -2.91 -0.02 0.52 16 33 H 0.21 0.45 8.06 -2.91 -0.02 0.42 16 34 H 0.42 5.19 9.06 -74.06 -0.67 4.52 16 35 H 0.41 8.70 8.46 -92.71 -0.78 7.92 16 36 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 37 H 0.05 1.58 7.85 -2.39 -0.02 1.56 16 38 H 0.06 2.12 7.90 -2.39 -0.02 2.10 16 39 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 40 H 0.37 20.60 7.91 -92.71 -0.73 19.87 16 41 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 42 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 43 H 0.07 2.36 8.07 -2.38 -0.02 2.34 16 Total: -1.00 -80.64 370.26 -2.48 -83.12 By element: Atomic # 1 Polarization: 34.58 SS G_CDS: -1.11 Total: 33.47 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: 5.93 Total: 7.55 kcal Atomic # 7 Polarization: -125.56 SS G_CDS: -7.24 Total: -132.80 kcal Atomic # 8 Polarization: -37.67 SS G_CDS: -2.09 Total: -39.76 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Total: -80.64 -2.48 -83.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086255175.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.969 kcal (2) G-P(sol) polarization free energy of solvation -80.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds