Wall clock time and date at job start Tue Mar 31 2020 13:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36011 * 117.00055 * 2 1 4 4 C 1.35851 * 120.31354 * 0.02562 * 3 2 1 5 5 N 1.35441 * 120.77384 * 180.02562 * 4 3 2 6 6 H 0.96998 * 119.29356 * 179.97438 * 5 4 3 7 7 C 1.36430 * 121.41068 * 0.02562 * 5 4 3 8 8 C 1.48077 * 119.71679 * 179.97438 * 7 5 4 9 9 O 1.21509 * 119.99804 * 180.02562 * 8 7 5 10 10 N 1.34780 * 120.00023 * 0.02562 * 8 7 5 11 11 C 1.46496 * 119.99679 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46653 * 179.97438 * 11 10 8 13 13 C 1.53783 * 113.61540 * 274.13565 * 12 11 10 14 14 C 1.53952 * 87.02079 * 220.05367 * 13 12 11 15 15 N 1.46504 * 113.53544 * 270.81002 * 14 13 12 16 16 C 1.36934 * 120.00115 * 252.49852 * 15 14 13 17 17 H 1.07995 * 120.00131 * 359.97438 * 16 15 14 18 18 C 1.38816 * 120.00161 * 179.97438 * 16 15 14 19 19 N 1.31621 * 119.99749 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00296 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46586 * 89.99981 * 20 18 16 22 22 H 1.48495 * 109.47245 * 210.00017 * 20 18 16 23 23 H 1.48497 * 109.47039 * 330.00121 * 20 18 16 24 24 C 1.53776 * 87.11323 * 25.36306 * 14 13 12 25 25 C 1.36169 * 120.56262 * 359.95829 * 7 5 4 26 26 C 1.41572 * 120.31058 * 179.72425 * 3 2 1 27 27 O 1.22263 * 120.66182 * 359.97438 * 26 3 2 28 28 H 1.09001 * 109.47103 * 300.00352 * 1 2 3 29 29 H 1.09004 * 109.47054 * 59.99856 * 1 2 3 30 30 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 31 31 H 1.07994 * 119.61302 * 359.97438 * 4 3 2 32 32 H 0.97003 * 119.99740 * 359.97438 * 10 8 7 33 33 H 1.08991 * 109.47524 * 299.99644 * 11 10 8 34 34 H 1.08999 * 109.46943 * 60.00383 * 11 10 8 35 35 H 1.08994 * 112.85156 * 45.33295 * 12 11 10 36 36 H 1.09007 * 113.61402 * 334.56943 * 13 12 11 37 37 H 1.08999 * 113.61669 * 105.47078 * 13 12 11 38 38 H 1.08997 * 113.74472 * 139.94541 * 14 13 12 39 39 H 0.97003 * 120.00008 * 72.49368 * 15 14 13 40 40 H 0.96996 * 120.00294 * 179.97438 * 19 18 16 41 41 H 1.09007 * 113.61539 * 220.09664 * 24 14 13 42 42 H 1.08994 * 113.61732 * 89.18835 * 24 14 13 43 43 H 1.08005 * 120.40797 * 180.02562 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3129 2.3552 0.0005 5 7 1.9181 3.5669 0.0000 6 1 1.3733 4.3695 0.0000 7 6 3.2775 3.6828 -0.0016 8 6 3.8997 5.0265 -0.0027 9 8 5.1098 5.1356 -0.0045 10 7 3.1236 6.1285 -0.0016 11 6 3.7393 7.4578 -0.0021 12 6 2.6445 8.5267 -0.0013 13 6 2.1317 8.8843 -1.4063 14 6 2.1003 10.3494 -0.9343 15 7 0.8296 10.7382 -0.3174 16 6 -0.0313 11.5663 -0.9868 17 1 0.2265 11.9331 -1.9693 18 6 -1.2356 11.9343 -0.4026 19 7 -1.5501 11.4868 0.7946 20 14 -2.4098 13.0645 -1.3154 21 1 -3.3420 12.2508 -2.1365 22 1 -3.1849 13.8681 -0.3364 23 1 -1.6359 13.9729 -2.1991 24 6 3.1865 9.9634 0.0835 25 6 4.0669 2.5733 -0.0018 26 6 3.4599 1.2936 0.0059 27 8 4.1431 0.2797 0.0115 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2345 2.2974 0.0005 32 1 2.1575 6.0413 -0.0004 33 1 4.3592 7.5715 0.8871 34 1 4.3571 7.5717 -0.8928 35 1 1.8490 8.3172 0.7137 36 1 2.8578 8.6959 -2.1972 37 1 1.1462 8.4750 -1.6287 38 1 2.4403 11.0604 -1.6872 39 1 0.5981 10.4090 0.5651 40 1 -2.3913 11.7442 1.2031 41 1 3.0513 10.4239 1.0622 42 1 4.2014 10.0705 -0.2993 43 1 5.1428 2.6679 -0.0027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091146427.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:07 Heat of formation + Delta-G solvation = -32.654084 kcal Electronic energy + Delta-G solvation = -25965.768537 eV Core-core repulsion = 22013.436435 eV Total energy + Delta-G solvation = -3952.332102 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.76474 -40.10425 -38.83994 -38.28281 -37.89656 -35.14106 -33.39944 -31.94890 -31.23863 -30.25844 -28.19676 -27.59069 -25.24870 -24.75156 -23.75914 -23.44610 -21.99996 -21.18734 -20.11459 -18.76472 -18.25387 -18.02405 -17.34632 -16.57071 -16.48435 -16.20366 -15.83823 -15.64092 -15.10020 -14.85669 -14.67993 -14.63976 -14.24586 -14.08165 -13.81371 -13.59713 -13.28542 -13.10686 -13.03212 -12.47159 -12.09582 -11.94583 -11.80346 -11.60715 -11.19088 -10.95935 -10.79113 -10.63125 -10.28176 -10.10499 -9.85231 -9.82301 -9.81542 -9.67021 -9.38208 -9.01821 -8.02575 -7.13817 -5.93367 -3.22802 0.31362 0.82832 2.17489 2.46585 2.50509 2.87435 3.32572 3.38703 3.38935 3.40149 3.97832 4.12361 4.28081 4.44528 4.54871 4.71203 4.72855 4.81799 4.83172 5.01840 5.07528 5.15237 5.31743 5.38357 5.39279 5.49951 5.63530 5.75639 5.79015 5.85095 5.98926 6.04814 6.17439 6.21160 6.28695 6.41165 6.56016 6.70669 6.81701 6.86960 6.97115 7.57548 7.59220 7.71527 8.25764 9.36790 9.92983 10.27013 11.28926 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015751 B = 0.002354 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.288248 B =11891.785368 C =13382.788206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.288 6.288 3 C -0.032 4.032 4 C 0.029 3.971 5 N -0.563 5.563 6 H 0.421 0.579 7 C 0.125 3.875 8 C 0.555 3.445 9 O -0.505 6.505 10 N -0.715 5.715 11 C 0.129 3.871 12 C -0.122 4.122 13 C -0.170 4.170 14 C 0.167 3.833 15 N -0.706 5.706 16 C -0.244 4.244 17 H 0.073 0.927 18 C -0.012 4.012 19 N -0.933 5.933 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.147 4.147 25 C -0.211 4.211 26 C 0.400 3.600 27 O -0.496 6.496 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.103 0.897 31 H 0.172 0.828 32 H 0.397 0.603 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.385 0.615 40 H 0.256 0.744 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.039 -16.388 -0.922 16.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.200 6.200 3 C -0.084 4.084 4 C -0.098 4.098 5 N -0.177 5.177 6 H 0.258 0.742 7 C 0.012 3.988 8 C 0.338 3.662 9 O -0.379 6.379 10 N -0.367 5.367 11 C 0.007 3.993 12 C -0.141 4.141 13 C -0.211 4.211 14 C 0.055 3.945 15 N -0.344 5.344 16 C -0.375 4.375 17 H 0.090 0.910 18 C -0.208 4.208 19 N -0.581 5.581 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.206 1.206 24 C -0.187 4.187 25 C -0.239 4.239 26 C 0.290 3.710 27 O -0.380 6.380 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.122 0.878 31 H 0.189 0.811 32 H 0.232 0.768 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.219 0.781 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.097 0.903 43 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 5.260 -16.907 -1.020 17.736 hybrid contribution -2.067 0.956 -0.112 2.281 sum 3.192 -15.951 -1.132 16.307 Atomic orbital electron populations 1.23162 0.78945 1.04643 1.01080 1.86282 1.20491 1.24219 1.88977 1.20428 0.94798 0.84745 1.08389 1.21676 0.98931 0.84042 1.05105 1.40718 1.05060 1.08644 1.63243 0.74158 1.20402 0.82890 0.95705 0.99794 1.17919 0.87146 0.82982 0.78132 1.90862 1.12884 1.85790 1.48372 1.46038 1.09954 1.06597 1.74119 1.21664 0.96040 0.79043 1.02588 1.22753 0.97338 0.93978 1.00019 1.23947 1.00541 1.02306 0.94321 1.21083 0.86963 0.92615 0.93837 1.42171 1.16067 1.56512 1.19648 1.19286 0.97538 1.20977 0.99716 0.90954 1.24767 0.98301 1.00924 0.96792 1.69651 1.24366 1.48856 1.15198 0.86169 0.80993 0.80323 0.78576 1.21659 1.21693 1.20633 1.23446 0.99441 0.94097 1.01671 1.22487 1.02337 0.90396 1.08661 1.16802 0.86153 0.89797 0.78291 1.90864 1.65707 1.37535 1.43865 0.92607 0.92612 0.87814 0.81137 0.76798 0.90988 0.90753 0.88798 0.91245 0.91495 0.91816 0.78147 0.93379 0.91153 0.90278 0.81305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.81 101.05 0.99 1.08 16 2 O -0.29 -3.09 10.33 -35.60 -0.37 -3.45 16 3 C -0.03 -0.34 6.71 -39.17 -0.26 -0.60 16 4 C 0.03 0.19 10.22 -16.81 -0.17 0.02 16 5 N -0.56 -3.39 5.26 -9.58 -0.05 -3.44 16 6 H 0.42 1.33 7.00 -40.82 -0.29 1.04 16 7 C 0.12 1.14 6.77 -82.53 -0.56 0.58 16 8 C 0.55 5.80 7.80 -12.22 -0.10 5.70 16 9 O -0.51 -7.08 16.27 5.36 0.09 -7.00 16 10 N -0.72 -6.24 5.55 -61.18 -0.34 -6.58 16 11 C 0.13 1.34 5.50 -4.04 -0.02 1.32 16 12 C -0.12 -1.47 3.62 -89.80 -0.33 -1.80 16 13 C -0.17 -2.38 7.44 -25.83 -0.19 -2.57 16 14 C 0.17 2.91 4.57 -67.03 -0.31 2.61 16 15 N -0.71 -15.97 5.31 -52.55 -0.28 -16.25 16 16 C -0.24 -6.31 9.97 -15.06 -0.15 -6.46 16 17 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 18 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 19 N -0.93 -26.40 13.06 55.49 0.72 -25.67 16 20 Si 0.91 21.15 29.55 -169.99 -5.02 16.13 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 24 C -0.15 -2.03 7.39 -25.92 -0.19 -2.22 16 25 C -0.21 -2.42 9.53 -39.03 -0.37 -2.79 16 26 C 0.40 5.36 6.78 -37.02 -0.25 5.11 16 27 O -0.50 -8.64 17.71 -11.15 -0.20 -8.84 16 28 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 29 H 0.06 0.20 7.66 -51.93 -0.40 -0.20 16 30 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.17 0.48 6.21 -52.49 -0.33 0.16 16 32 H 0.40 2.48 6.68 -40.82 -0.27 2.21 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.81 7.87 -51.93 -0.41 0.40 16 35 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.07 0.87 7.92 -51.92 -0.41 0.46 16 37 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 39 H 0.38 9.20 7.90 -40.82 -0.32 8.88 16 40 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 43 H 0.17 2.00 7.58 -52.48 -0.40 1.61 16 LS Contribution 365.50 15.07 5.51 5.51 Total: -1.00 -35.07 365.50 -7.66 -42.73 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -5.72 Total: 7.32 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -2.00 Total: -0.45 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: 0.06 Total: -51.95 kcal Atomic # 8 Polarization: -18.81 SS G_CDS: -0.48 Total: -19.29 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.07 -7.66 -42.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091146427.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.079 kcal (2) G-P(sol) polarization free energy of solvation -35.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds