Wall clock time and date at job start Tue Mar 31 2020 13:50:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36011 * 117.00055 * 2 1 4 4 C 1.35851 * 120.31354 * 0.02562 * 3 2 1 5 5 N 1.35441 * 120.77384 * 180.02562 * 4 3 2 6 6 H 0.96998 * 119.29356 * 179.97438 * 5 4 3 7 7 C 1.36430 * 121.41068 * 0.02562 * 5 4 3 8 8 C 1.48077 * 119.71679 * 179.97438 * 7 5 4 9 9 O 1.21509 * 119.99804 * 180.02562 * 8 7 5 10 10 N 1.34780 * 120.00023 * 0.02562 * 8 7 5 11 11 C 1.46496 * 119.99679 * 179.97438 * 10 8 7 12 12 C 1.53004 * 109.46653 * 179.97438 * 11 10 8 13 13 C 1.53783 * 113.61540 * 274.13565 * 12 11 10 14 14 C 1.53952 * 87.02079 * 220.05367 * 13 12 11 15 15 N 1.46504 * 113.53544 * 270.81002 * 14 13 12 16 16 C 1.36934 * 120.00115 * 252.49852 * 15 14 13 17 17 H 1.07995 * 120.00131 * 359.97438 * 16 15 14 18 18 C 1.38816 * 120.00161 * 179.97438 * 16 15 14 19 19 N 1.31621 * 119.99749 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00296 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46586 * 89.99981 * 20 18 16 22 22 H 1.48495 * 109.47245 * 210.00017 * 20 18 16 23 23 H 1.48497 * 109.47039 * 330.00121 * 20 18 16 24 24 C 1.53776 * 87.11323 * 25.36306 * 14 13 12 25 25 C 1.36169 * 120.56262 * 359.95829 * 7 5 4 26 26 C 1.41572 * 120.31058 * 179.72425 * 3 2 1 27 27 O 1.22263 * 120.66182 * 359.97438 * 26 3 2 28 28 H 1.09001 * 109.47103 * 300.00352 * 1 2 3 29 29 H 1.09004 * 109.47054 * 59.99856 * 1 2 3 30 30 H 1.09000 * 109.47187 * 179.97438 * 1 2 3 31 31 H 1.07994 * 119.61302 * 359.97438 * 4 3 2 32 32 H 0.97003 * 119.99740 * 359.97438 * 10 8 7 33 33 H 1.08991 * 109.47524 * 299.99644 * 11 10 8 34 34 H 1.08999 * 109.46943 * 60.00383 * 11 10 8 35 35 H 1.08994 * 112.85156 * 45.33295 * 12 11 10 36 36 H 1.09007 * 113.61402 * 334.56943 * 13 12 11 37 37 H 1.08999 * 113.61669 * 105.47078 * 13 12 11 38 38 H 1.08997 * 113.74472 * 139.94541 * 14 13 12 39 39 H 0.97003 * 120.00008 * 72.49368 * 15 14 13 40 40 H 0.96996 * 120.00294 * 179.97438 * 19 18 16 41 41 H 1.09007 * 113.61539 * 220.09664 * 24 14 13 42 42 H 1.08994 * 113.61732 * 89.18835 * 24 14 13 43 43 H 1.08005 * 120.40797 * 180.02562 * 25 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2119 0.0000 4 6 1.3129 2.3552 0.0005 5 7 1.9181 3.5669 0.0000 6 1 1.3733 4.3695 0.0000 7 6 3.2775 3.6828 -0.0016 8 6 3.8997 5.0265 -0.0027 9 8 5.1098 5.1356 -0.0045 10 7 3.1236 6.1285 -0.0016 11 6 3.7393 7.4578 -0.0021 12 6 2.6445 8.5267 -0.0013 13 6 2.1317 8.8843 -1.4063 14 6 2.1003 10.3494 -0.9343 15 7 0.8296 10.7382 -0.3174 16 6 -0.0313 11.5663 -0.9868 17 1 0.2265 11.9331 -1.9693 18 6 -1.2356 11.9343 -0.4026 19 7 -1.5501 11.4868 0.7946 20 14 -2.4098 13.0645 -1.3154 21 1 -3.3420 12.2508 -2.1365 22 1 -3.1849 13.8681 -0.3364 23 1 -1.6359 13.9729 -2.1991 24 6 3.1865 9.9634 0.0835 25 6 4.0669 2.5733 -0.0018 26 6 3.4599 1.2936 0.0059 27 8 4.1431 0.2797 0.0115 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2345 2.2974 0.0005 32 1 2.1575 6.0413 -0.0004 33 1 4.3592 7.5715 0.8871 34 1 4.3571 7.5717 -0.8928 35 1 1.8490 8.3172 0.7137 36 1 2.8578 8.6959 -2.1972 37 1 1.1462 8.4750 -1.6287 38 1 2.4403 11.0604 -1.6872 39 1 0.5981 10.4090 0.5651 40 1 -2.3913 11.7442 1.2031 41 1 3.0513 10.4239 1.0622 42 1 4.2014 10.0705 -0.2993 43 1 5.1428 2.6679 -0.0027 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091146427.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:06 Heat of formation + Delta-G solvation = -58.919101 kcal Electronic energy + Delta-G solvation = -25966.907474 eV Core-core repulsion = 22013.436435 eV Total energy + Delta-G solvation = -3953.471039 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.55960 -40.98531 -39.95595 -39.05056 -38.80844 -36.23200 -35.06443 -32.78784 -32.30006 -31.71659 -29.04479 -28.31171 -26.40534 -25.97920 -25.20765 -24.22244 -23.13545 -22.05067 -20.87961 -19.86426 -19.35508 -19.10493 -18.68087 -17.37498 -17.21998 -17.11855 -16.73557 -16.58626 -16.42838 -15.85269 -15.71497 -15.51548 -15.34749 -15.19951 -14.78547 -14.68730 -14.61688 -14.22465 -13.85036 -13.73925 -13.26475 -12.93274 -12.91544 -12.63528 -12.41476 -12.28844 -12.15945 -12.06959 -11.79673 -11.46615 -11.35539 -10.94590 -10.82047 -10.72072 -10.59471 -10.24085 -8.97224 -8.81516 -7.94618 -5.21682 -0.54800 0.10094 1.44338 1.49360 1.50535 1.58329 1.60010 1.70852 2.29232 2.53367 2.56784 3.28468 3.38995 3.51318 3.62090 3.73276 3.78299 3.81060 3.89507 4.15977 4.32429 4.35511 4.41004 4.42324 4.45485 4.56553 4.74112 4.76551 4.81257 4.97465 4.98703 5.03395 5.05562 5.18291 5.35837 5.38520 5.45989 5.55701 5.69250 5.73361 6.19300 6.25543 6.29907 6.78818 6.87957 7.35584 8.13246 8.35012 9.28378 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.015751 B = 0.002354 C = 0.002092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1777.288248 B =11891.785368 C =13382.788206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.324 6.324 3 C -0.061 4.061 4 C 0.072 3.928 5 N -0.534 5.534 6 H 0.441 0.559 7 C 0.145 3.855 8 C 0.561 3.439 9 O -0.541 6.541 10 N -0.700 5.700 11 C 0.136 3.864 12 C -0.101 4.101 13 C -0.153 4.153 14 C 0.140 3.860 15 N -0.719 5.719 16 C -0.240 4.240 17 H 0.074 0.926 18 C -0.072 4.072 19 N -0.967 5.967 20 Si 0.967 3.033 21 H -0.287 1.287 22 H -0.299 1.299 23 H -0.273 1.273 24 C -0.136 4.136 25 C -0.231 4.231 26 C 0.378 3.622 27 O -0.568 6.568 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.111 0.889 31 H 0.223 0.777 32 H 0.412 0.588 33 H 0.074 0.926 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.376 0.624 40 H 0.251 0.749 41 H 0.057 0.943 42 H 0.105 0.895 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.500 -15.598 -1.676 15.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 O -0.237 6.237 3 C -0.111 4.111 4 C -0.057 4.057 5 N -0.148 5.148 6 H 0.283 0.717 7 C 0.030 3.970 8 C 0.345 3.655 9 O -0.417 6.417 10 N -0.352 5.352 11 C 0.014 3.986 12 C -0.120 4.120 13 C -0.194 4.194 14 C 0.030 3.970 15 N -0.357 5.357 16 C -0.371 4.371 17 H 0.092 0.908 18 C -0.265 4.265 19 N -0.618 5.618 20 Si 0.797 3.203 21 H -0.214 1.214 22 H -0.225 1.225 23 H -0.198 1.198 24 C -0.176 4.176 25 C -0.258 4.258 26 C 0.274 3.726 27 O -0.458 6.458 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.129 0.871 31 H 0.239 0.761 32 H 0.250 0.750 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.110 0.890 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.208 0.792 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.123 0.877 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 3.696 -16.065 -1.811 16.584 hybrid contribution -1.628 0.841 0.082 1.834 sum 2.069 -15.224 -1.730 15.461 Atomic orbital electron populations 1.23508 0.76275 1.06063 1.03007 1.86237 1.23335 1.24646 1.89462 1.20208 0.93769 0.86273 1.10889 1.22258 1.00608 0.82392 1.00420 1.40874 1.04139 1.09812 1.59949 0.71682 1.20061 0.83888 0.94339 0.98685 1.17910 0.86651 0.83369 0.77562 1.90862 1.14600 1.86209 1.50057 1.45853 1.10663 1.05664 1.73039 1.21510 0.95267 0.78863 1.02984 1.22520 0.97347 0.93634 0.98509 1.23749 1.00711 0.98874 0.96031 1.21442 0.86056 0.94408 0.95091 1.42278 1.17508 1.56525 1.19392 1.19632 0.97734 1.20154 0.99625 0.90759 1.25460 1.00142 1.03097 0.97762 1.69781 1.24613 1.50705 1.16656 0.85233 0.79087 0.78673 0.77336 1.21383 1.22538 1.19764 1.23356 0.99513 0.94773 0.99936 1.22272 1.02140 0.90742 1.10677 1.17298 0.87858 0.89547 0.77896 1.90814 1.67183 1.39221 1.48616 0.90502 0.90497 0.87059 0.76120 0.75021 0.90766 0.90378 0.89218 0.88974 0.92689 0.92630 0.79207 0.94050 0.92403 0.87705 0.82886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.04 9.81 113.37 1.11 1.15 16 2 O -0.32 -6.77 10.33 -78.55 -0.81 -7.59 16 3 C -0.06 -1.22 6.71 22.54 0.15 -1.07 16 4 C 0.07 0.64 10.22 83.58 0.85 1.49 16 5 N -0.53 -4.27 5.26 -184.22 -0.97 -5.24 16 6 H 0.44 0.34 7.00 -92.71 -0.65 -0.31 16 7 C 0.15 2.36 6.77 40.56 0.27 2.64 16 8 C 0.56 10.41 7.80 86.85 0.68 11.09 16 9 O -0.54 -14.53 16.27 -3.74 -0.06 -14.59 16 10 N -0.70 -9.66 5.55 -465.77 -2.58 -12.24 16 11 C 0.14 2.34 5.50 86.38 0.48 2.82 16 12 C -0.10 -2.12 3.62 -10.26 -0.04 -2.16 16 13 C -0.15 -3.81 7.44 31.18 0.23 -3.58 16 14 C 0.14 4.62 4.57 45.57 0.21 4.82 16 15 N -0.72 -31.99 5.31 -320.18 -1.70 -33.69 16 16 C -0.24 -12.22 9.97 84.04 0.84 -11.38 16 17 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 18 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 19 N -0.97 -54.90 13.06 21.65 0.28 -54.62 16 20 Si 0.97 43.21 29.55 68.60 2.03 45.24 16 21 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 22 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 24 C -0.14 -3.42 7.39 31.12 0.23 -3.19 16 25 C -0.23 -5.46 9.53 22.63 0.22 -5.25 16 26 C 0.38 10.73 6.78 23.93 0.16 10.89 16 27 O -0.57 -21.86 17.71 8.95 0.16 -21.71 16 28 H 0.08 0.26 7.66 -2.39 -0.02 0.24 16 29 H 0.08 0.25 7.66 -2.38 -0.02 0.24 16 30 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.22 -0.17 6.21 -2.91 -0.02 -0.19 16 32 H 0.41 3.24 6.68 -92.71 -0.62 2.62 16 33 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.08 1.38 7.87 -2.39 -0.02 1.36 16 35 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.09 1.92 7.92 -2.38 -0.02 1.90 16 37 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.06 1.90 8.10 -2.39 -0.02 1.88 16 39 H 0.38 17.84 7.90 -92.71 -0.73 17.11 16 40 H 0.25 13.91 8.31 -92.71 -0.77 13.14 16 41 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 42 H 0.10 2.12 8.10 -2.39 -0.02 2.10 16 43 H 0.15 4.01 7.58 -2.91 -0.02 3.98 16 Total: -1.00 -81.68 365.50 1.28 -80.40 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -0.92 Total: 19.14 kcal Atomic # 6 Polarization: -0.97 SS G_CDS: 5.86 Total: 4.89 kcal Atomic # 7 Polarization: -100.81 SS G_CDS: -4.97 Total: -105.78 kcal Atomic # 8 Polarization: -43.17 SS G_CDS: -0.71 Total: -43.89 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -81.68 1.28 -80.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091146427.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.476 kcal (2) G-P(sol) polarization free energy of solvation -81.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds