Wall clock time and date at job start Tue Mar 31 2020 13:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46832 * 2 1 4 4 C 1.35732 * 116.99581 * 179.97438 * 3 2 1 5 5 C 1.41860 * 126.78354 * 180.29818 * 4 3 2 6 6 C 1.36662 * 103.80923 * 180.11971 * 5 4 3 7 7 C 1.47544 * 126.87755 * 179.87703 * 6 5 4 8 8 O 1.21581 * 119.99999 * 359.71437 * 7 6 5 9 9 N 1.34775 * 119.99695 * 179.71681 * 7 6 5 10 10 C 1.46499 * 119.99894 * 180.02562 * 9 7 6 11 11 H 1.09004 * 110.68808 * 37.01166 * 10 9 7 12 12 C 1.55484 * 110.61295 * 160.15581 * 10 9 7 13 13 C 1.55846 * 103.32645 * 118.41496 * 12 10 9 14 14 H 1.09003 * 116.12040 * 159.23710 * 13 12 10 15 15 C 1.56858 * 105.77507 * 288.56579 * 13 12 10 16 16 C 1.54854 * 103.35767 * 71.46091 * 15 13 12 17 17 C 1.55846 * 110.62841 * 274.02596 * 10 9 7 18 18 H 1.09003 * 115.56021 * 82.69310 * 17 10 9 19 19 N 1.50232 * 101.05306 * 208.57156 * 17 10 9 20 20 C 1.36939 * 130.84020 * 233.93438 * 19 17 10 21 21 H 1.08001 * 119.99597 * 341.52578 * 20 19 17 22 22 C 1.38805 * 120.00653 * 161.52653 * 20 19 17 23 23 N 1.31618 * 119.99617 * 334.41092 * 22 20 19 24 24 Si 1.86803 * 120.00444 * 154.40495 * 22 20 19 25 25 H 1.48504 * 109.46958 * 180.02562 * 24 22 20 26 26 H 1.48493 * 109.46925 * 60.00133 * 24 22 20 27 27 H 1.48504 * 109.46927 * 300.00351 * 24 22 20 28 28 O 1.34664 * 106.24377 * 359.62163 * 6 5 4 29 29 N 1.20879 * 111.62978 * 0.26103 * 28 6 5 30 30 H 1.09003 * 109.47295 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47010 * 299.99630 * 1 2 3 32 32 H 1.08997 * 109.47691 * 59.99857 * 1 2 3 33 33 H 1.08999 * 109.47146 * 240.00507 * 2 1 3 34 34 H 1.09004 * 109.47405 * 120.00299 * 2 1 3 35 35 H 1.07995 * 128.09346 * 0.02562 * 5 4 3 36 36 H 0.97000 * 120.00473 * 0.02562 * 9 7 6 37 37 H 1.08997 * 110.60672 * 359.97438 * 12 10 9 38 38 H 1.09003 * 110.89205 * 236.96765 * 12 10 9 39 39 H 1.08997 * 110.43360 * 313.10549 * 15 13 12 40 40 H 1.09004 * 110.89691 * 190.02909 * 15 13 12 41 41 H 1.09001 * 110.62454 * 241.78390 * 16 15 13 42 42 H 1.08992 * 110.62911 * 118.76294 * 16 15 13 43 43 H 0.97000 * 120.00478 * 1.60642 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5251 0.0005 5 6 4.0452 2.7628 0.0066 6 6 5.3624 2.3988 0.0016 7 6 6.5302 3.3006 0.0021 8 8 6.3678 4.5055 0.0021 9 7 7.7769 2.7886 0.0025 10 6 8.9365 3.6839 0.0036 11 1 8.7433 4.5635 0.6177 12 6 10.2061 2.9348 0.4979 13 6 11.1654 3.0059 -0.7282 14 1 12.2253 2.8636 -0.5172 15 6 10.5586 2.0360 -1.8013 16 6 9.2929 2.7853 -2.2857 17 6 9.3092 4.1012 -1.4510 18 1 8.7325 4.9282 -1.8654 19 7 10.7866 4.3367 -1.3134 20 6 11.5530 5.4266 -1.6296 21 1 11.1739 6.1739 -2.3110 22 6 12.8169 5.5711 -1.0745 23 7 13.0977 5.0033 0.0792 24 14 14.1195 6.5712 -1.9648 25 1 15.3733 6.5711 -1.1690 26 1 13.6411 7.9666 -2.1356 27 1 14.3796 5.9704 -3.2977 28 8 5.3812 1.0523 0.0020 29 7 4.2638 0.5911 0.0013 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.6293 3.7594 0.0120 36 1 7.9065 1.8273 0.0021 37 1 9.9698 1.8990 0.7416 38 1 10.6449 3.4396 1.3586 39 1 10.2898 1.0835 -1.3446 40 1 11.2546 1.8846 -2.6264 41 1 8.3964 2.2043 -2.0693 42 1 9.3611 3.0054 -3.3510 43 1 12.4289 4.4646 0.5303 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095772090.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:43 Heat of formation + Delta-G solvation = 43.181189 kcal Electronic energy + Delta-G solvation = -27202.645430 eV Core-core repulsion = 23253.601792 eV Total energy + Delta-G solvation = -3949.043638 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.19879 -40.20999 -39.32890 -38.56086 -34.38774 -33.71455 -32.66717 -32.09520 -31.49064 -29.48194 -29.04532 -27.78941 -24.93175 -24.02035 -23.62675 -23.13724 -21.59239 -20.96884 -19.82595 -19.22049 -18.66559 -18.20180 -17.56885 -17.19732 -16.31649 -16.12908 -15.92826 -15.24276 -14.88756 -14.70235 -14.15754 -14.09335 -13.82228 -13.69278 -13.48564 -13.12925 -12.99777 -12.47647 -12.29795 -12.00479 -11.79729 -11.60370 -11.55912 -11.34413 -11.12385 -10.77842 -10.61296 -10.38313 -10.22297 -10.09599 -10.07090 -9.94625 -9.65590 -9.61062 -9.45837 -8.82780 -8.49728 -7.00753 -6.21172 -3.16964 0.58356 1.84642 2.27769 2.44476 2.95399 3.30163 3.48464 3.52109 3.69557 3.82410 4.41057 4.45865 4.50132 4.56155 4.75574 4.79135 4.93333 4.96549 5.17481 5.26582 5.27705 5.30189 5.44534 5.53517 5.55832 5.67982 5.72584 5.84541 5.90901 6.01293 6.07505 6.29526 6.36521 6.43239 6.60526 6.63056 6.66232 6.76784 6.94457 7.06838 7.40833 7.55188 7.81077 8.05330 8.38631 8.90769 9.73958 10.42080 11.21531 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.038020 B = 0.002514 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.283102 B =11134.323061 C =11336.576287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.057 3.943 3 O -0.281 6.281 4 C 0.207 3.793 5 C -0.159 4.159 6 C -0.049 4.049 7 C 0.597 3.403 8 O -0.507 6.507 9 N -0.693 5.693 10 C 0.125 3.875 11 H 0.091 0.909 12 C -0.135 4.135 13 C 0.142 3.858 14 H 0.106 0.894 15 C -0.133 4.133 16 C -0.129 4.129 17 C 0.129 3.871 18 H 0.089 0.911 19 N -0.591 5.591 20 C -0.323 4.323 21 H 0.067 0.933 22 C -0.028 4.028 23 N -0.921 5.921 24 Si 1.074 2.926 25 H -0.285 1.285 26 H -0.293 1.293 27 H -0.294 1.294 28 O 0.115 5.885 29 N -0.393 5.393 30 H 0.082 0.918 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.190 0.810 36 H 0.403 0.597 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.051 0.949 40 H 0.058 0.942 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.329 -11.865 0.548 22.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.188 6.188 4 C 0.010 3.990 5 C -0.182 4.182 6 C -0.115 4.115 7 C 0.379 3.621 8 O -0.383 6.383 9 N -0.343 5.343 10 C 0.020 3.980 11 H 0.109 0.891 12 C -0.175 4.175 13 C 0.034 3.966 14 H 0.124 0.876 15 C -0.173 4.173 16 C -0.169 4.169 17 C 0.020 3.980 18 H 0.107 0.893 19 N -0.313 5.313 20 C -0.451 4.451 21 H 0.085 0.915 22 C -0.230 4.230 23 N -0.562 5.562 24 Si 0.904 3.096 25 H -0.211 1.211 26 H -0.220 1.220 27 H -0.221 1.221 28 O 0.049 5.951 29 N -0.117 5.117 30 H 0.101 0.899 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.207 0.793 36 H 0.238 0.762 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -17.996 -11.330 0.583 21.273 hybrid contribution -1.932 -0.510 -0.083 2.000 sum -19.928 -11.840 0.500 23.185 Atomic orbital electron populations 1.21800 0.92088 1.03256 1.03744 1.22848 0.95963 0.80501 1.02496 1.86224 1.12978 1.30309 1.89286 1.21839 0.85832 0.90509 1.00835 1.22181 0.90137 0.99263 1.06641 1.24296 0.96853 0.84151 1.06228 1.16497 0.81135 0.86100 0.78347 1.90903 1.84684 1.12728 1.49949 1.46206 1.05100 1.10982 1.72007 1.22951 0.82530 0.92091 1.00404 0.89120 1.23304 0.95445 0.98521 1.00191 1.23170 0.97313 0.85687 0.90389 0.87581 1.23127 0.97391 0.97020 0.99743 1.22907 0.96744 0.97527 0.99712 1.23254 0.87498 0.94985 0.92255 0.89253 1.46549 1.00045 1.10904 1.73848 1.19718 0.99083 1.01508 1.24788 0.91547 1.25846 0.98689 1.02654 0.95761 1.70814 1.39911 1.34221 1.11240 0.83356 0.76076 0.75129 0.75069 1.21068 1.21968 1.22117 1.84947 1.22828 1.18727 1.68560 1.73989 0.90445 1.22146 1.25151 0.89906 0.91299 0.91287 0.91490 0.91511 0.79302 0.76202 0.91966 0.90749 0.93003 0.92347 0.92794 0.92566 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 10.28 37.16 0.38 -0.42 16 2 C 0.06 0.45 6.38 37.16 0.24 0.69 16 3 O -0.28 -3.03 10.21 -18.90 -0.19 -3.22 16 4 C 0.21 2.48 8.00 -16.72 -0.13 2.34 16 5 C -0.16 -1.89 10.97 -38.77 -0.43 -2.31 16 6 C -0.05 -0.61 7.29 -36.36 -0.26 -0.88 16 7 C 0.60 8.76 7.81 -12.47 -0.10 8.66 16 8 O -0.51 -9.16 16.64 5.29 0.09 -9.07 16 9 N -0.69 -9.66 3.66 -52.10 -0.19 -9.85 16 10 C 0.13 2.22 3.10 -65.09 -0.20 2.02 16 11 H 0.09 1.82 7.71 -51.93 -0.40 1.42 16 12 C -0.13 -2.38 6.11 -23.89 -0.15 -2.53 16 13 C 0.14 2.95 3.80 -62.24 -0.24 2.72 16 14 H 0.11 2.49 6.80 -51.93 -0.35 2.14 16 15 C -0.13 -2.33 6.50 -23.67 -0.15 -2.48 16 16 C -0.13 -2.23 6.34 -24.23 -0.15 -2.38 16 17 C 0.13 2.59 5.29 -62.80 -0.33 2.26 16 18 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 19 N -0.59 -14.25 2.79 -145.21 -0.41 -14.65 16 20 C -0.32 -8.91 10.39 -15.06 -0.16 -9.06 16 21 H 0.07 1.85 7.95 -52.49 -0.42 1.43 16 22 C -0.03 -0.78 5.29 -17.43 -0.09 -0.88 16 23 N -0.92 -26.83 12.91 55.49 0.72 -26.12 16 24 Si 1.07 25.06 29.99 -169.99 -5.10 19.97 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 28 O 0.11 1.38 11.03 15.49 0.17 1.55 16 29 N -0.39 -4.86 11.50 30.47 0.35 -4.51 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.19 1.96 8.06 -52.49 -0.42 1.53 16 36 H 0.40 4.62 7.88 -40.82 -0.32 4.29 16 37 H 0.06 0.89 7.41 -51.93 -0.38 0.50 16 38 H 0.07 1.43 7.65 -51.93 -0.40 1.04 16 39 H 0.05 0.75 7.88 -51.93 -0.41 0.34 16 40 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.05 0.79 6.56 -51.93 -0.34 0.45 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 43 H 0.27 7.65 5.57 -40.82 -0.23 7.43 16 LS Contribution 356.20 15.07 5.37 5.37 Total: -1.00 -31.53 356.20 -6.82 -38.35 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -5.85 Total: 4.44 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -1.78 Total: -2.26 kcal Atomic # 7 Polarization: -55.60 SS G_CDS: 0.47 Total: -55.13 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.07 Total: -10.74 kcal Atomic # 14 Polarization: 25.06 SS G_CDS: -5.10 Total: 19.97 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -31.53 -6.82 -38.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095772090.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.531 kcal (2) G-P(sol) polarization free energy of solvation -31.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds