Wall clock time and date at job start Tue Mar 31 2020 13:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42903 * 109.46832 * 2 1 4 4 C 1.35732 * 116.99581 * 179.97438 * 3 2 1 5 5 C 1.41860 * 126.78354 * 180.29818 * 4 3 2 6 6 C 1.36662 * 103.80923 * 180.11971 * 5 4 3 7 7 C 1.47544 * 126.87755 * 179.87703 * 6 5 4 8 8 O 1.21581 * 119.99999 * 359.71437 * 7 6 5 9 9 N 1.34775 * 119.99695 * 179.71681 * 7 6 5 10 10 C 1.46499 * 119.99894 * 180.02562 * 9 7 6 11 11 H 1.09004 * 110.68808 * 37.01166 * 10 9 7 12 12 C 1.55484 * 110.61295 * 160.15581 * 10 9 7 13 13 C 1.55846 * 103.32645 * 118.41496 * 12 10 9 14 14 H 1.09003 * 116.12040 * 159.23710 * 13 12 10 15 15 C 1.56858 * 105.77507 * 288.56579 * 13 12 10 16 16 C 1.54854 * 103.35767 * 71.46091 * 15 13 12 17 17 C 1.55846 * 110.62841 * 274.02596 * 10 9 7 18 18 H 1.09003 * 115.56021 * 82.69310 * 17 10 9 19 19 N 1.50232 * 101.05306 * 208.57156 * 17 10 9 20 20 C 1.36939 * 130.84020 * 233.93438 * 19 17 10 21 21 H 1.08001 * 119.99597 * 341.52578 * 20 19 17 22 22 C 1.38805 * 120.00653 * 161.52653 * 20 19 17 23 23 N 1.31618 * 119.99617 * 334.41092 * 22 20 19 24 24 Si 1.86803 * 120.00444 * 154.40495 * 22 20 19 25 25 H 1.48504 * 109.46958 * 180.02562 * 24 22 20 26 26 H 1.48493 * 109.46925 * 60.00133 * 24 22 20 27 27 H 1.48504 * 109.46927 * 300.00351 * 24 22 20 28 28 O 1.34664 * 106.24377 * 359.62163 * 6 5 4 29 29 N 1.20879 * 111.62978 * 0.26103 * 28 6 5 30 30 H 1.09003 * 109.47295 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47010 * 299.99630 * 1 2 3 32 32 H 1.08997 * 109.47691 * 59.99857 * 1 2 3 33 33 H 1.08999 * 109.47146 * 240.00507 * 2 1 3 34 34 H 1.09004 * 109.47405 * 120.00299 * 2 1 3 35 35 H 1.07995 * 128.09346 * 0.02562 * 5 4 3 36 36 H 0.97000 * 120.00473 * 0.02562 * 9 7 6 37 37 H 1.08997 * 110.60672 * 359.97438 * 12 10 9 38 38 H 1.09003 * 110.89205 * 236.96765 * 12 10 9 39 39 H 1.08997 * 110.43360 * 313.10549 * 15 13 12 40 40 H 1.09004 * 110.89691 * 190.02909 * 15 13 12 41 41 H 1.09001 * 110.62454 * 241.78390 * 16 15 13 42 42 H 1.08992 * 110.62911 * 118.76294 * 16 15 13 43 43 H 0.97000 * 120.00478 * 1.60642 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3519 1.5251 0.0005 5 6 4.0452 2.7628 0.0066 6 6 5.3624 2.3988 0.0016 7 6 6.5302 3.3006 0.0021 8 8 6.3678 4.5055 0.0021 9 7 7.7769 2.7886 0.0025 10 6 8.9365 3.6839 0.0036 11 1 8.7433 4.5635 0.6177 12 6 10.2061 2.9348 0.4979 13 6 11.1654 3.0059 -0.7282 14 1 12.2253 2.8636 -0.5172 15 6 10.5586 2.0360 -1.8013 16 6 9.2929 2.7853 -2.2857 17 6 9.3092 4.1012 -1.4510 18 1 8.7325 4.9282 -1.8654 19 7 10.7866 4.3367 -1.3134 20 6 11.5530 5.4266 -1.6296 21 1 11.1739 6.1739 -2.3110 22 6 12.8169 5.5711 -1.0745 23 7 13.0977 5.0033 0.0792 24 14 14.1195 6.5712 -1.9648 25 1 15.3733 6.5711 -1.1690 26 1 13.6411 7.9666 -2.1356 27 1 14.3796 5.9704 -3.2977 28 8 5.3812 1.0523 0.0020 29 7 4.2638 0.5911 0.0013 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 3.6293 3.7594 0.0120 36 1 7.9065 1.8273 0.0021 37 1 9.9698 1.8990 0.7416 38 1 10.6449 3.4396 1.3586 39 1 10.2898 1.0835 -1.3446 40 1 11.2546 1.8846 -2.6264 41 1 8.3964 2.2043 -2.0693 42 1 9.3611 3.0054 -3.3510 43 1 12.4289 4.4646 0.5303 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095772090.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:42 Heat of formation + Delta-G solvation = 21.628920 kcal Electronic energy + Delta-G solvation = -27203.580007 eV Core-core repulsion = 23253.601792 eV Total energy + Delta-G solvation = -3949.978215 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -46.14705 -41.63188 -40.12775 -39.96981 -35.82244 -34.65376 -34.44586 -33.10971 -32.15294 -30.92418 -30.82290 -29.34997 -26.25931 -25.45585 -24.56346 -24.09141 -22.95849 -22.02878 -21.47434 -20.48205 -20.09327 -19.42117 -19.13283 -18.05752 -17.36778 -17.18195 -17.02066 -16.63595 -16.36395 -15.77520 -15.62416 -15.46950 -15.35907 -14.82519 -14.76017 -14.09290 -14.00586 -13.55843 -13.53226 -13.43277 -13.02790 -12.89491 -12.60509 -12.54344 -12.38972 -12.37813 -12.14300 -11.92509 -11.82868 -11.63637 -11.56538 -11.35629 -11.07912 -11.04959 -10.54683 -10.47199 -10.18830 -8.93516 -8.37239 -5.26928 -0.42930 0.91402 1.34468 1.47670 1.58304 1.65946 1.80234 1.84621 2.18799 2.63652 2.91972 3.21717 3.36097 3.56148 3.67904 3.80528 3.89958 3.92420 3.92485 4.02130 4.07544 4.26475 4.26937 4.33468 4.44943 4.53238 4.57020 4.64791 4.78344 4.84754 4.85304 4.91368 4.98659 5.04110 5.15241 5.19247 5.32431 5.45578 5.53775 5.66210 5.84987 6.23304 6.32270 6.82778 6.86660 6.92755 7.68185 8.45181 9.08716 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.038020 B = 0.002514 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 736.283102 B =11134.323061 C =11336.576287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.049 3.951 3 O -0.289 6.289 4 C 0.205 3.795 5 C -0.153 4.153 6 C -0.052 4.052 7 C 0.606 3.394 8 O -0.544 6.544 9 N -0.678 5.678 10 C 0.145 3.855 11 H 0.062 0.938 12 C -0.121 4.121 13 C 0.130 3.870 14 H 0.073 0.927 15 C -0.121 4.121 16 C -0.116 4.116 17 C 0.118 3.882 18 H 0.068 0.932 19 N -0.623 5.623 20 C -0.331 4.331 21 H 0.051 0.949 22 C -0.079 4.079 23 N -0.950 5.950 24 Si 1.120 2.880 25 H -0.290 1.290 26 H -0.280 1.280 27 H -0.282 1.282 28 O 0.123 5.877 29 N -0.396 5.396 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.201 0.799 36 H 0.421 0.579 37 H 0.108 0.892 38 H 0.052 0.948 39 H 0.096 0.904 40 H 0.047 0.953 41 H 0.088 0.912 42 H 0.049 0.951 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.183 -14.135 0.203 25.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.025 4.025 3 O -0.196 6.196 4 C 0.008 3.992 5 C -0.176 4.176 6 C -0.118 4.118 7 C 0.390 3.610 8 O -0.422 6.422 9 N -0.330 5.330 10 C 0.039 3.961 11 H 0.080 0.920 12 C -0.161 4.161 13 C 0.024 3.976 14 H 0.091 0.909 15 C -0.160 4.160 16 C -0.155 4.155 17 C 0.010 3.990 18 H 0.086 0.914 19 N -0.347 5.347 20 C -0.459 4.459 21 H 0.069 0.931 22 C -0.275 4.275 23 N -0.593 5.593 24 Si 0.945 3.055 25 H -0.216 1.216 26 H -0.206 1.206 27 H -0.208 1.208 28 O 0.057 5.943 29 N -0.120 5.120 30 H 0.123 0.877 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.218 0.782 36 H 0.259 0.741 37 H 0.126 0.874 38 H 0.070 0.930 39 H 0.114 0.886 40 H 0.066 0.934 41 H 0.106 0.894 42 H 0.068 0.932 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.910 -13.663 0.231 24.149 hybrid contribution -1.518 0.148 0.024 1.525 sum -21.428 -13.515 0.255 25.335 Atomic orbital electron populations 1.21833 0.90124 1.04691 1.03748 1.23129 0.97520 0.79233 1.02651 1.86244 1.12222 1.32113 1.89040 1.21921 0.86393 0.90315 1.00569 1.22399 0.89970 0.99933 1.05313 1.23733 0.96020 0.84341 1.07700 1.16576 0.81522 0.85784 0.77136 1.90900 1.85287 1.14577 1.51409 1.45867 1.03919 1.11356 1.71838 1.22360 0.83789 0.91944 0.98032 0.91990 1.23165 0.94146 1.00845 0.97929 1.23251 0.96545 0.85203 0.92582 0.90854 1.23063 0.96705 0.97897 0.98339 1.22814 0.98111 0.95899 0.98660 1.23373 0.85383 0.95977 0.94234 0.91387 1.46771 1.01869 1.11410 1.74630 1.19876 0.99874 1.02297 1.23896 0.93075 1.27066 1.00667 1.03811 0.95950 1.70890 1.39986 1.35974 1.12437 0.82750 0.73690 0.74699 0.74381 1.21611 1.20631 1.20814 1.84946 1.22756 1.18121 1.68510 1.73971 0.90600 1.22227 1.25224 0.87737 0.91265 0.91294 0.91342 0.91315 0.78202 0.74059 0.87399 0.92963 0.88607 0.93365 0.89398 0.93244 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 10.28 71.98 0.74 -0.48 16 2 C 0.05 0.67 6.38 71.98 0.46 1.13 16 3 O -0.29 -5.66 10.21 -90.56 -0.92 -6.59 16 4 C 0.20 4.45 8.00 85.78 0.69 5.14 16 5 C -0.15 -3.33 10.97 22.80 0.25 -3.08 16 6 C -0.05 -1.18 7.29 24.36 0.18 -1.00 16 7 C 0.61 16.76 7.81 86.70 0.68 17.44 16 8 O -0.54 -19.42 16.64 -3.97 -0.07 -19.49 16 9 N -0.68 -17.29 3.66 -437.02 -1.60 -18.89 16 10 C 0.15 5.04 3.10 46.83 0.15 5.19 16 11 H 0.06 2.54 7.71 -2.38 -0.02 2.52 16 12 C -0.12 -4.15 6.11 32.43 0.20 -3.95 16 13 C 0.13 5.42 3.80 46.60 0.18 5.59 16 14 H 0.07 3.53 6.80 -2.39 -0.02 3.52 16 15 C -0.12 -3.91 6.50 32.58 0.21 -3.70 16 16 C -0.12 -3.72 6.34 32.21 0.20 -3.52 16 17 C 0.12 4.76 5.29 46.23 0.24 5.00 16 18 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 19 N -0.62 -30.70 2.79 -613.34 -1.71 -32.41 16 20 C -0.33 -18.84 10.39 84.03 0.87 -17.97 16 21 H 0.05 2.97 7.95 -2.91 -0.02 2.95 16 22 C -0.08 -4.52 5.29 84.86 0.45 -4.07 16 23 N -0.95 -57.13 12.91 21.65 0.28 -56.86 16 24 Si 1.12 51.72 29.99 68.60 2.06 53.78 16 25 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 26 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 27 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 28 O 0.12 2.60 11.03 65.61 0.72 3.33 16 29 N -0.40 -8.77 11.50 -172.00 -1.98 -10.75 16 30 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 32 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.20 3.80 8.06 -2.91 -0.02 3.77 16 36 H 0.42 7.88 7.88 -92.71 -0.73 7.15 16 37 H 0.11 2.67 7.41 -2.39 -0.02 2.65 16 38 H 0.05 2.03 7.65 -2.39 -0.02 2.01 16 39 H 0.10 2.29 7.88 -2.39 -0.02 2.27 16 40 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 41 H 0.09 2.23 6.56 -2.39 -0.02 2.21 16 42 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.26 15.55 5.57 -92.71 -0.52 15.03 16 Total: -1.00 -71.26 356.20 2.84 -68.43 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: 0.57 Total: 17.72 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 5.49 Total: 1.72 kcal Atomic # 7 Polarization: -113.89 SS G_CDS: -5.01 Total: -118.90 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.27 Total: -22.75 kcal Atomic # 14 Polarization: 51.72 SS G_CDS: 2.06 Total: 53.78 kcal Total: -71.26 2.84 -68.43 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095772090.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.056 kcal (2) G-P(sol) polarization free energy of solvation -71.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds