Wall clock time and date at job start Tue Mar 31 2020 13:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99836 * 2 1 4 4 C 1.50699 * 109.46836 * 180.02562 * 3 2 1 5 5 C 1.35320 * 126.66910 * 90.28213 * 4 3 2 6 6 C 1.42274 * 103.91899 * 180.15050 * 5 4 3 7 7 C 1.48333 * 126.93403 * 179.88710 * 6 5 4 8 8 O 1.21489 * 120.00117 * 359.71024 * 7 6 5 9 9 N 1.34775 * 119.99710 * 179.71314 * 7 6 5 10 10 C 1.46502 * 120.00043 * 180.02562 * 9 7 6 11 11 H 1.09005 * 110.68382 * 37.05937 * 10 9 7 12 12 C 1.56680 * 110.79386 * 160.98727 * 10 9 7 13 13 C 1.55848 * 103.60244 * 117.75822 * 12 10 9 14 14 H 1.08997 * 115.56123 * 159.79270 * 13 12 10 15 15 C 1.55844 * 105.06585 * 288.40734 * 13 12 10 16 16 C 1.54847 * 103.44529 * 71.82238 * 15 13 12 17 17 C 1.55844 * 103.44768 * 0.02562 * 16 15 13 18 18 H 1.08997 * 115.56027 * 158.81450 * 17 16 15 19 19 N 1.50232 * 101.05139 * 32.93551 * 17 16 15 20 20 C 1.36945 * 130.83810 * 125.31442 * 19 17 16 21 21 H 1.07994 * 119.99580 * 0.02562 * 20 19 17 22 22 C 1.38810 * 119.99922 * 180.02562 * 20 19 17 23 23 N 1.31617 * 120.00137 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99758 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47447 * 90.00049 * 24 22 20 26 26 H 1.48503 * 109.46928 * 209.99893 * 24 22 20 27 27 H 1.48507 * 109.47264 * 329.99547 * 24 22 20 28 28 N 1.30984 * 106.12354 * 359.62907 * 6 5 4 29 29 O 1.20898 * 111.43919 * 0.23533 * 28 6 5 30 30 H 1.09005 * 109.47062 * 59.99766 * 1 2 3 31 31 H 1.09003 * 109.47246 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46934 * 300.00521 * 1 2 3 33 33 H 1.08997 * 109.47627 * 59.99905 * 3 2 1 34 34 H 1.09003 * 109.47128 * 299.99240 * 3 2 1 35 35 H 1.07997 * 128.03789 * 0.02562 * 5 4 3 36 36 H 0.97004 * 120.00411 * 359.97438 * 9 7 6 37 37 H 1.08998 * 110.35533 * 359.31365 * 12 10 9 38 38 H 1.08997 * 110.88437 * 236.45608 * 12 10 9 39 39 H 1.09005 * 110.62341 * 313.33277 * 15 13 12 40 40 H 1.08993 * 110.62745 * 190.31247 * 15 13 12 41 41 H 1.09004 * 110.62519 * 241.51112 * 16 15 13 42 42 H 1.08998 * 110.62993 * 118.49240 * 16 15 13 43 43 H 0.97003 * 120.00287 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.3181 1.1282 -1.0864 6 6 5.6257 1.0181 -0.5368 7 6 6.9019 0.9170 -1.2860 8 8 6.8948 0.9181 -2.5009 9 7 8.0693 0.8237 -0.6191 10 6 9.3298 0.7244 -1.3590 11 1 9.3000 1.3440 -2.2553 12 6 10.5433 1.1059 -0.4443 13 6 11.3886 -0.2023 -0.3921 14 1 12.4320 -0.0769 -0.1030 15 6 10.5601 -1.1851 0.4891 16 6 9.3655 -1.5642 -0.4203 17 6 9.6352 -0.7595 -1.7273 18 1 9.1372 -1.1343 -2.6215 19 7 11.1371 -0.7636 -1.7633 20 6 12.0084 -1.1693 -2.7388 21 1 11.6304 -1.5650 -3.6698 22 6 13.3774 -1.0718 -2.5308 23 7 13.8380 -0.5900 -1.3959 24 14 14.5658 -1.6246 -3.8617 25 1 14.8717 -0.4810 -4.7584 26 1 15.8208 -2.1107 -3.2339 27 1 13.9500 -2.7215 -4.6509 28 7 5.4756 1.0298 0.7644 29 8 4.3106 1.1227 1.0740 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6886 1.8465 0.8899 34 1 1.6887 1.8464 -0.8901 35 1 4.0341 1.1564 -2.1280 36 1 8.0751 0.8232 0.3510 37 1 10.1960 1.3786 0.5522 38 1 11.1209 1.9189 -0.8842 39 1 10.2111 -0.6880 1.3942 40 1 11.1490 -2.0679 0.7373 41 1 8.4240 -1.2553 0.0340 42 1 9.3619 -2.6352 -0.6230 43 1 14.7946 -0.5223 -1.2504 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096120786.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:02 Heat of formation + Delta-G solvation = 40.530216 kcal Electronic energy + Delta-G solvation = -27069.869809 eV Core-core repulsion = 23120.711216 eV Total energy + Delta-G solvation = -3949.158593 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -45.29975 -39.98641 -38.44250 -38.32063 -34.24105 -34.05116 -32.93127 -32.25917 -29.27729 -29.01551 -28.20746 -27.74393 -26.07371 -24.95107 -23.91466 -22.84450 -21.36188 -20.32379 -19.45731 -18.65405 -18.14914 -18.03816 -17.09832 -16.77218 -16.71491 -16.32270 -15.51951 -15.40705 -15.03689 -14.79605 -14.16008 -14.13928 -13.84219 -13.71283 -13.37432 -12.73075 -12.36360 -12.31902 -12.02928 -11.81333 -11.73747 -11.50046 -11.07225 -10.90248 -10.88617 -10.82510 -10.60854 -10.31248 -10.20936 -10.15077 -10.07096 -9.91135 -9.81301 -9.41728 -9.26677 -8.93456 -8.58521 -6.91885 -5.72633 -3.10528 0.88002 1.40219 2.52025 3.05426 3.24314 3.40694 3.45631 3.47274 3.51201 3.85773 4.24287 4.46298 4.51513 4.68597 4.78634 4.85463 4.88385 5.12340 5.18225 5.20550 5.20961 5.38316 5.48087 5.61731 5.77537 5.84195 5.96477 6.05826 6.12651 6.27442 6.34234 6.47998 6.52324 6.59629 6.63360 6.78970 6.93933 6.98990 7.25194 7.52158 7.56697 7.77649 7.85337 8.14626 8.27612 9.10595 9.72962 10.53324 11.37308 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.031483 B = 0.002538 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.162479 B =11028.523341 C =11279.610452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.146 3.854 4 C -0.045 4.045 5 C -0.153 4.153 6 C -0.021 4.021 7 C 0.591 3.409 8 O -0.523 6.523 9 N -0.692 5.692 10 C 0.124 3.876 11 H 0.087 0.913 12 C -0.138 4.138 13 C 0.156 3.844 14 H 0.154 0.846 15 C -0.138 4.138 16 C -0.133 4.133 17 C 0.128 3.872 18 H 0.086 0.914 19 N -0.588 5.588 20 C -0.210 4.210 21 H 0.080 0.920 22 C -0.013 4.013 23 N -0.923 5.923 24 Si 0.918 3.082 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 N -0.324 5.324 29 O 0.130 5.870 30 H 0.046 0.954 31 H 0.091 0.909 32 H 0.046 0.954 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.183 0.817 36 H 0.402 0.598 37 H 0.055 0.945 38 H 0.068 0.932 39 H 0.045 0.955 40 H 0.056 0.944 41 H 0.050 0.950 42 H 0.052 0.948 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.451 5.494 6.414 25.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.069 3.931 4 C -0.108 4.108 5 C -0.176 4.176 6 C -0.180 4.180 7 C 0.374 3.626 8 O -0.398 6.398 9 N -0.342 5.342 10 C 0.018 3.982 11 H 0.105 0.895 12 C -0.178 4.178 13 C 0.050 3.950 14 H 0.171 0.829 15 C -0.177 4.177 16 C -0.172 4.172 17 C 0.019 3.981 18 H 0.104 0.896 19 N -0.308 5.308 20 C -0.338 4.338 21 H 0.097 0.903 22 C -0.208 4.208 23 N -0.572 5.572 24 Si 0.748 3.252 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.208 1.208 28 N -0.023 5.023 29 O 0.052 5.948 30 H 0.065 0.935 31 H 0.110 0.890 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.200 0.800 36 H 0.237 0.763 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -23.061 5.190 6.359 24.478 hybrid contribution -0.076 -0.087 -0.890 0.897 sum -23.136 5.103 5.469 24.316 Atomic orbital electron populations 1.22828 0.79699 1.03537 1.00427 1.87996 1.20544 1.26271 1.95554 1.20636 0.83094 0.86206 1.03176 1.23894 0.95001 1.06064 0.85865 1.22506 0.89865 1.03670 1.01513 1.23719 0.97245 1.07110 0.89959 1.16852 0.81535 0.77749 0.86473 1.90804 1.86295 1.50340 1.12360 1.46110 1.05958 1.71687 1.10479 1.23098 0.80422 0.99849 0.94806 0.89463 1.23611 0.95779 1.01488 0.96952 1.23717 0.99661 0.87597 0.84049 0.82883 1.23068 0.97088 1.00707 0.96884 1.22944 0.97061 0.99592 0.97628 1.23179 0.86837 0.92412 0.95652 0.89577 1.46455 0.98264 1.72269 1.13812 1.19066 0.86426 1.33964 0.94342 0.90252 1.24709 0.96477 1.01939 0.97659 1.69461 1.12441 1.51594 1.23664 0.86016 0.80465 0.78163 0.80524 1.21634 1.21693 1.20753 1.74190 0.97160 1.15200 1.15791 1.84780 1.11432 1.65343 1.33238 0.93505 0.89005 0.93501 0.90376 0.89312 0.79958 0.76289 0.92691 0.91306 0.93594 0.92557 0.93192 0.92954 0.93556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.25 16 2 O -0.38 -3.08 10.69 -35.23 -0.38 -3.46 16 3 C 0.15 0.89 6.50 36.01 0.23 1.12 16 4 C -0.05 -0.44 7.10 -35.35 -0.25 -0.69 16 5 C -0.15 -1.75 10.92 -39.07 -0.43 -2.18 16 6 C -0.02 -0.30 7.19 -82.52 -0.59 -0.89 16 7 C 0.59 9.96 7.84 -12.11 -0.09 9.87 16 8 O -0.52 -10.31 16.68 5.38 0.09 -10.22 16 9 N -0.69 -11.36 3.61 -51.18 -0.18 -11.55 16 10 C 0.12 2.39 3.19 -64.39 -0.21 2.18 16 11 H 0.09 1.83 7.71 -51.93 -0.40 1.43 16 12 C -0.14 -2.69 6.26 -23.22 -0.15 -2.84 16 13 C 0.16 3.58 4.69 -62.78 -0.29 3.28 16 14 H 0.15 3.97 5.58 -51.93 -0.29 3.68 16 15 C -0.14 -2.77 6.44 -24.24 -0.16 -2.92 16 16 C -0.13 -2.59 6.32 -24.24 -0.15 -2.75 16 17 C 0.13 2.78 5.31 -62.77 -0.33 2.44 16 18 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 19 N -0.59 -14.84 3.00 -145.76 -0.44 -15.28 16 20 C -0.21 -5.84 10.59 -15.06 -0.16 -6.00 16 21 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 22 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 23 N -0.92 -26.32 10.48 55.49 0.58 -25.74 16 24 Si 0.92 22.17 29.55 -169.99 -5.02 17.14 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 28 N -0.32 -4.35 11.84 33.29 0.39 -3.96 16 29 O 0.13 1.49 11.18 17.25 0.19 1.69 16 30 H 0.05 0.14 8.14 -51.93 -0.42 -0.29 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.05 0.14 8.14 -51.93 -0.42 -0.29 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.18 1.77 8.06 -52.49 -0.42 1.35 16 36 H 0.40 5.96 7.79 -40.82 -0.32 5.64 16 37 H 0.05 0.92 7.37 -51.93 -0.38 0.53 16 38 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 39 H 0.05 0.79 7.82 -51.93 -0.41 0.39 16 40 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 41 H 0.05 0.88 6.43 -51.93 -0.33 0.54 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 357.38 15.07 5.39 5.39 Total: -1.00 -32.22 357.38 -6.84 -39.06 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -5.90 Total: 5.49 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -1.56 Total: 1.44 kcal Atomic # 7 Polarization: -56.87 SS G_CDS: 0.35 Total: -56.52 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: -0.09 Total: -12.00 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -32.22 -6.84 -39.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096120786.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.591 kcal (2) G-P(sol) polarization free energy of solvation -32.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds