Wall clock time and date at job start Tue Mar 31 2020 13:53:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42903 * 113.99836 * 2 1 4 4 C 1.50699 * 109.46836 * 180.02562 * 3 2 1 5 5 C 1.35320 * 126.66910 * 90.28213 * 4 3 2 6 6 C 1.42274 * 103.91899 * 180.15050 * 5 4 3 7 7 C 1.48333 * 126.93403 * 179.88710 * 6 5 4 8 8 O 1.21489 * 120.00117 * 359.71024 * 7 6 5 9 9 N 1.34775 * 119.99710 * 179.71314 * 7 6 5 10 10 C 1.46502 * 120.00043 * 180.02562 * 9 7 6 11 11 H 1.09005 * 110.68382 * 37.05937 * 10 9 7 12 12 C 1.56680 * 110.79386 * 160.98727 * 10 9 7 13 13 C 1.55848 * 103.60244 * 117.75822 * 12 10 9 14 14 H 1.08997 * 115.56123 * 159.79270 * 13 12 10 15 15 C 1.55844 * 105.06585 * 288.40734 * 13 12 10 16 16 C 1.54847 * 103.44529 * 71.82238 * 15 13 12 17 17 C 1.55844 * 103.44768 * 0.02562 * 16 15 13 18 18 H 1.08997 * 115.56027 * 158.81450 * 17 16 15 19 19 N 1.50232 * 101.05139 * 32.93551 * 17 16 15 20 20 C 1.36945 * 130.83810 * 125.31442 * 19 17 16 21 21 H 1.07994 * 119.99580 * 0.02562 * 20 19 17 22 22 C 1.38810 * 119.99922 * 180.02562 * 20 19 17 23 23 N 1.31617 * 120.00137 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99758 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47447 * 90.00049 * 24 22 20 26 26 H 1.48503 * 109.46928 * 209.99893 * 24 22 20 27 27 H 1.48507 * 109.47264 * 329.99547 * 24 22 20 28 28 N 1.30984 * 106.12354 * 359.62907 * 6 5 4 29 29 O 1.20898 * 111.43919 * 0.23533 * 28 6 5 30 30 H 1.09005 * 109.47062 * 59.99766 * 1 2 3 31 31 H 1.09003 * 109.47246 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46934 * 300.00521 * 1 2 3 33 33 H 1.08997 * 109.47627 * 59.99905 * 3 2 1 34 34 H 1.09003 * 109.47128 * 299.99240 * 3 2 1 35 35 H 1.07997 * 128.03789 * 0.02562 * 5 4 3 36 36 H 0.97004 * 120.00411 * 359.97438 * 9 7 6 37 37 H 1.08998 * 110.35533 * 359.31365 * 12 10 9 38 38 H 1.08997 * 110.88437 * 236.45608 * 12 10 9 39 39 H 1.09005 * 110.62341 * 313.33277 * 15 13 12 40 40 H 1.08993 * 110.62745 * 190.31247 * 15 13 12 41 41 H 1.09004 * 110.62519 * 241.51112 * 16 15 13 42 42 H 1.08998 * 110.62993 * 118.49240 * 16 15 13 43 43 H 0.97003 * 120.00287 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.3181 1.1282 -1.0864 6 6 5.6257 1.0181 -0.5368 7 6 6.9019 0.9170 -1.2860 8 8 6.8948 0.9181 -2.5009 9 7 8.0693 0.8237 -0.6191 10 6 9.3298 0.7244 -1.3590 11 1 9.3000 1.3440 -2.2553 12 6 10.5433 1.1059 -0.4443 13 6 11.3886 -0.2023 -0.3921 14 1 12.4320 -0.0769 -0.1030 15 6 10.5601 -1.1851 0.4891 16 6 9.3655 -1.5642 -0.4203 17 6 9.6352 -0.7595 -1.7273 18 1 9.1372 -1.1343 -2.6215 19 7 11.1371 -0.7636 -1.7633 20 6 12.0084 -1.1693 -2.7388 21 1 11.6304 -1.5650 -3.6698 22 6 13.3774 -1.0718 -2.5308 23 7 13.8380 -0.5900 -1.3959 24 14 14.5658 -1.6246 -3.8617 25 1 14.8717 -0.4810 -4.7584 26 1 15.8208 -2.1107 -3.2339 27 1 13.9500 -2.7215 -4.6509 28 7 5.4756 1.0298 0.7644 29 8 4.3106 1.1227 1.0740 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.6886 1.8465 0.8899 34 1 1.6887 1.8464 -0.8901 35 1 4.0341 1.1564 -2.1280 36 1 8.0751 0.8232 0.3510 37 1 10.1960 1.3786 0.5522 38 1 11.1209 1.9189 -0.8842 39 1 10.2111 -0.6880 1.3942 40 1 11.1490 -2.0679 0.7373 41 1 8.4240 -1.2553 0.0340 42 1 9.3619 -2.6352 -0.6230 43 1 14.7946 -0.5223 -1.2504 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096120786.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:02 Heat of formation + Delta-G solvation = 19.086441 kcal Electronic energy + Delta-G solvation = -27070.799681 eV Core-core repulsion = 23120.711216 eV Total energy + Delta-G solvation = -3950.088465 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -46.24806 -41.53221 -39.87049 -38.89275 -35.66888 -35.16109 -34.31558 -33.65080 -31.05328 -30.75687 -29.42143 -28.70421 -26.62527 -26.39884 -25.48154 -23.83905 -22.91777 -21.77507 -21.07218 -20.26514 -19.16661 -19.02659 -18.73915 -18.02405 -17.19774 -16.99973 -16.85383 -16.68721 -16.58392 -16.08536 -15.91452 -15.43642 -15.26633 -14.80134 -14.18741 -14.05580 -13.79795 -13.53530 -13.27644 -13.20125 -12.93390 -12.79778 -12.69632 -12.61650 -12.43156 -12.37210 -12.02016 -11.94936 -11.66557 -11.62752 -11.50525 -11.17950 -11.07115 -10.85622 -10.73748 -10.68748 -10.16246 -8.90593 -7.81712 -5.21446 -0.06936 0.47373 1.46104 1.47516 1.55618 1.70416 1.86433 1.99052 2.47647 2.78789 3.00753 3.31844 3.42264 3.53030 3.79996 3.81571 3.99947 4.03486 4.08021 4.12898 4.32000 4.38950 4.44341 4.52358 4.52878 4.59779 4.64764 4.68347 4.71378 4.79594 4.88596 4.97654 4.99401 5.07364 5.08312 5.25461 5.37091 5.48283 5.63104 5.83944 6.12503 6.20314 6.29715 6.85413 6.96701 7.03588 7.65930 8.51862 9.25729 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.031483 B = 0.002538 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.162479 B =11028.523341 C =11279.610452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.144 3.856 4 C -0.026 4.026 5 C -0.165 4.165 6 C -0.044 4.044 7 C 0.594 3.406 8 O -0.557 6.557 9 N -0.683 5.683 10 C 0.142 3.858 11 H 0.067 0.933 12 C -0.124 4.124 13 C 0.143 3.857 14 H 0.123 0.877 15 C -0.127 4.127 16 C -0.119 4.119 17 C 0.120 3.880 18 H 0.071 0.929 19 N -0.614 5.614 20 C -0.226 4.226 21 H 0.073 0.927 22 C -0.063 4.063 23 N -0.944 5.944 24 Si 0.978 3.022 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.276 1.276 28 N -0.333 5.333 29 O 0.139 5.861 30 H 0.061 0.939 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.104 0.896 34 H 0.117 0.883 35 H 0.195 0.805 36 H 0.413 0.587 37 H 0.091 0.909 38 H 0.055 0.945 39 H 0.082 0.918 40 H 0.038 0.962 41 H 0.075 0.925 42 H 0.044 0.956 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.136 6.100 7.591 28.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.337 6.337 3 C 0.067 3.933 4 C -0.089 4.089 5 C -0.187 4.187 6 C -0.202 4.202 7 C 0.379 3.621 8 O -0.434 6.434 9 N -0.334 5.334 10 C 0.036 3.964 11 H 0.085 0.915 12 C -0.164 4.164 13 C 0.037 3.963 14 H 0.141 0.859 15 C -0.167 4.167 16 C -0.159 4.159 17 C 0.011 3.989 18 H 0.089 0.911 19 N -0.335 5.335 20 C -0.355 4.355 21 H 0.091 0.909 22 C -0.256 4.256 23 N -0.593 5.593 24 Si 0.807 3.193 25 H -0.215 1.215 26 H -0.218 1.218 27 H -0.201 1.201 28 N -0.031 5.031 29 O 0.058 5.942 30 H 0.079 0.921 31 H 0.111 0.889 32 H 0.080 0.920 33 H 0.122 0.878 34 H 0.134 0.866 35 H 0.212 0.788 36 H 0.251 0.749 37 H 0.109 0.891 38 H 0.074 0.926 39 H 0.100 0.900 40 H 0.057 0.943 41 H 0.093 0.907 42 H 0.062 0.938 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -25.774 5.800 7.566 27.481 hybrid contribution 0.601 -0.266 -1.229 1.394 sum -25.173 5.534 6.337 26.542 Atomic orbital electron populations 1.23006 0.77883 1.04158 1.01893 1.87933 1.22548 1.27312 1.95900 1.20979 0.80373 0.86105 1.05843 1.24514 0.96400 1.03511 0.84458 1.22723 0.88956 1.04310 1.02726 1.23411 0.96785 1.09426 0.90557 1.17145 0.82289 0.76512 0.86194 1.90786 1.86942 1.51712 1.13988 1.45877 1.04986 1.71739 1.10809 1.22597 0.81724 0.97643 0.94465 0.91488 1.23439 0.94946 0.99271 0.98754 1.23632 0.99197 0.89874 0.83638 0.85933 1.22965 0.96401 0.99535 0.97757 1.22833 0.97966 0.98761 0.96324 1.23295 0.85058 0.94293 0.96222 0.91103 1.46684 0.99606 1.72861 1.14390 1.19309 0.87398 1.33845 0.94933 0.90895 1.25447 0.97801 1.02643 0.99720 1.69681 1.12218 1.52496 1.24907 0.85073 0.78262 0.77729 0.78207 1.21489 1.21764 1.20123 1.74180 0.98242 1.15391 1.15284 1.84754 1.11080 1.64488 1.33855 0.92067 0.88942 0.91980 0.87769 0.86566 0.78785 0.74912 0.89074 0.92617 0.89955 0.94296 0.90668 0.93758 0.94055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 113.37 1.25 1.40 16 2 O -0.42 -5.51 10.69 -148.98 -1.59 -7.10 16 3 C 0.14 1.23 6.50 71.24 0.46 1.69 16 4 C -0.03 -0.42 7.10 25.01 0.18 -0.25 16 5 C -0.16 -3.45 10.92 22.60 0.25 -3.20 16 6 C -0.04 -1.19 7.19 42.96 0.31 -0.88 16 7 C 0.59 19.58 7.84 86.93 0.68 20.26 16 8 O -0.56 -22.07 16.68 -3.68 -0.06 -22.13 16 9 N -0.68 -21.52 3.61 -434.15 -1.57 -23.09 16 10 C 0.14 5.46 3.19 47.28 0.15 5.61 16 11 H 0.07 2.87 7.71 -2.38 -0.02 2.85 16 12 C -0.12 -4.75 6.26 32.87 0.21 -4.54 16 13 C 0.14 6.56 4.69 46.22 0.22 6.78 16 14 H 0.12 6.52 5.58 -2.39 -0.01 6.50 16 15 C -0.13 -4.96 6.44 32.21 0.21 -4.75 16 16 C -0.12 -4.55 6.32 32.21 0.20 -4.34 16 17 C 0.12 5.22 5.31 46.25 0.25 5.47 16 18 H 0.07 3.26 8.14 -2.39 -0.02 3.25 16 19 N -0.61 -31.72 3.00 -615.06 -1.84 -33.56 16 20 C -0.23 -12.93 10.59 84.03 0.89 -12.04 16 21 H 0.07 4.12 7.83 -2.91 -0.02 4.09 16 22 C -0.06 -3.60 5.50 84.86 0.47 -3.13 16 23 N -0.94 -55.18 10.48 21.65 0.23 -54.95 16 24 Si 0.98 46.50 29.55 68.60 2.03 48.53 16 25 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 26 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 27 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 28 N -0.33 -8.25 11.84 -49.52 -0.59 -8.84 16 29 O 0.14 2.83 11.18 71.91 0.80 3.63 16 30 H 0.06 0.17 8.14 -2.38 -0.02 0.15 16 31 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 33 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.12 0.38 8.14 -2.39 -0.02 0.37 16 35 H 0.19 3.46 8.06 -2.91 -0.02 3.44 16 36 H 0.41 11.21 7.79 -92.70 -0.72 10.49 16 37 H 0.09 2.79 7.37 -2.39 -0.02 2.77 16 38 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.08 2.60 7.82 -2.38 -0.02 2.58 16 40 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.07 2.47 6.43 -2.38 -0.02 2.46 16 42 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 Total: -1.00 -71.85 357.38 3.44 -68.40 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: 0.32 Total: 21.04 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 5.71 Total: 8.07 kcal Atomic # 7 Polarization: -116.67 SS G_CDS: -3.77 Total: -120.44 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.85 Total: -25.60 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.53 kcal Total: -71.85 3.44 -68.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096120786.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.488 kcal (2) G-P(sol) polarization free energy of solvation -71.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds