Wall clock time and date at job start Tue Mar 31 2020 13:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 114.00107 * 2 1 4 4 C 1.50702 * 109.47434 * 179.97438 * 3 2 1 5 5 N 1.29938 * 125.38031 * 90.00096 * 4 3 2 6 6 C 1.36065 * 108.47934 * 180.02562 * 5 4 3 7 7 C 1.47417 * 126.45112 * 180.02562 * 6 5 4 8 8 O 1.21605 * 120.00258 * 180.02562 * 7 6 5 9 9 N 1.34780 * 119.99700 * 0.02562 * 7 6 5 10 10 C 1.46498 * 119.99593 * 180.02562 * 9 7 6 11 11 H 1.08996 * 110.68764 * 37.08803 * 10 9 7 12 12 C 1.54856 * 110.62532 * 160.07955 * 10 9 7 13 13 C 1.57316 * 103.31893 * 118.08920 * 12 10 9 14 14 H 1.09002 * 115.49006 * 158.86342 * 13 12 10 15 15 C 1.55845 * 105.78981 * 288.79303 * 13 12 10 16 16 C 1.54861 * 103.44608 * 71.29628 * 15 13 12 17 17 C 1.55844 * 103.44299 * 0.02562 * 16 15 13 18 18 H 1.09000 * 115.55784 * 158.81473 * 17 16 15 19 19 N 1.50235 * 101.05209 * 32.93491 * 17 16 15 20 20 C 1.36938 * 130.83637 * 125.77817 * 19 17 16 21 21 H 1.08008 * 120.00134 * 346.17088 * 20 19 17 22 22 C 1.38805 * 120.00319 * 166.17531 * 20 19 17 23 23 N 1.31622 * 120.00125 * 162.59745 * 22 20 19 24 24 Si 1.86802 * 119.99946 * 342.60091 * 22 20 19 25 25 H 1.48497 * 109.47506 * 85.45876 * 24 22 20 26 26 H 1.48501 * 109.47226 * 205.46596 * 24 22 20 27 27 H 1.48505 * 109.46791 * 325.46168 * 24 22 20 28 28 C 1.36101 * 107.10129 * 0.25521 * 6 5 4 29 29 O 1.34049 * 125.37924 * 270.04317 * 4 3 2 30 30 H 1.08999 * 109.47030 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47527 * 300.00083 * 1 2 3 32 32 H 1.08998 * 109.47120 * 60.00653 * 1 2 3 33 33 H 1.09002 * 109.47074 * 59.99733 * 3 2 1 34 34 H 1.09002 * 109.46955 * 299.99674 * 3 2 1 35 35 H 0.96994 * 120.00068 * 359.97438 * 9 7 6 36 36 H 1.09006 * 110.62446 * 236.97685 * 12 10 9 37 37 H 1.09000 * 110.62653 * 359.83543 * 12 10 9 38 38 H 1.08997 * 110.62897 * 189.78281 * 15 13 12 39 39 H 1.08999 * 110.62756 * 312.81155 * 15 13 12 40 40 H 1.08996 * 110.62472 * 241.50940 * 16 15 13 41 41 H 1.09003 * 110.62270 * 118.48954 * 16 15 13 42 42 H 0.97003 * 119.99558 * 180.02562 * 23 22 20 43 43 H 1.07997 * 126.52118 * 179.74095 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2629 1.1269 -1.0585 6 6 5.5605 1.0237 -0.6624 7 6 6.7400 0.9305 -1.5418 8 8 7.8527 0.8414 -1.0593 9 7 6.5850 0.9441 -2.8806 10 6 7.7571 0.8509 -3.7545 11 1 8.4997 0.1742 -3.3319 12 6 7.3439 0.3899 -5.1739 13 6 7.7636 1.6017 -6.0851 14 1 7.8995 1.3694 -7.1414 15 6 6.7580 2.7465 -5.7579 16 6 7.1742 3.1957 -4.3355 17 6 8.3749 2.2616 -3.9973 18 1 9.0459 2.6218 -3.2175 19 7 8.9885 2.0778 -5.3563 20 6 10.2684 2.2856 -5.7964 21 1 10.9645 2.8446 -5.1885 22 6 10.6714 1.7780 -7.0239 23 7 11.7550 2.2462 -7.6061 24 14 9.6756 0.4303 -7.8496 25 1 8.5729 1.0401 -8.6351 26 1 10.5556 -0.3510 -8.7554 27 1 9.1069 -0.4698 -6.8143 28 6 5.5642 1.0174 0.6986 29 8 4.2857 1.1246 1.0939 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 5.6975 1.0148 -3.2654 36 1 7.8817 -0.5156 -5.4552 37 1 6.2673 0.2278 -5.2268 38 1 6.8666 3.5672 -6.4668 39 1 5.7349 2.3705 -5.7578 40 1 6.3574 3.0425 -3.6302 41 1 7.4891 4.2392 -4.3392 42 1 12.0363 1.8916 -8.4640 43 1 6.4309 0.9428 1.3387 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096259710.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:00 Heat of formation + Delta-G solvation = -16.212172 kcal Electronic energy + Delta-G solvation = -27330.467069 eV Core-core repulsion = 23378.847941 eV Total energy + Delta-G solvation = -3951.619128 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.54828 -41.61548 -39.88728 -38.88553 -36.06814 -35.50129 -34.35690 -32.55069 -31.52572 -30.94509 -29.84441 -28.72178 -26.64584 -26.19552 -25.07138 -23.11967 -22.56512 -22.11749 -21.55560 -20.37875 -19.51795 -18.84616 -18.25078 -17.83858 -17.51424 -17.01808 -16.98988 -16.65438 -16.52069 -16.50047 -15.56590 -15.32532 -15.30383 -14.99093 -14.74799 -14.20388 -13.86064 -13.83203 -13.52351 -13.26913 -13.13845 -12.89834 -12.60778 -12.54388 -12.52261 -12.28965 -12.25124 -12.01050 -11.88500 -11.50863 -11.36346 -11.26020 -11.03232 -10.82505 -10.76795 -10.32790 -10.07107 -9.16125 -8.13432 -5.39633 -0.01383 0.73643 1.26119 1.40299 1.43416 1.50377 1.96893 2.16113 2.43310 2.57566 2.97864 3.17380 3.23458 3.62815 3.71398 3.73849 3.78043 3.96037 4.14347 4.18561 4.26132 4.27077 4.38671 4.42931 4.51092 4.56003 4.59485 4.60686 4.65742 4.69669 4.82698 4.90587 4.94645 4.98192 5.04309 5.17447 5.27417 5.33293 5.53266 5.59042 6.04456 6.12005 6.23638 6.55346 6.60337 7.09711 7.46787 8.19935 9.07464 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.023643 B = 0.002989 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.987518 B = 9364.222815 C = 9886.232275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.416 6.416 3 C 0.159 3.841 4 C 0.193 3.807 5 N -0.454 5.454 6 C -0.096 4.096 7 C 0.599 3.401 8 O -0.570 6.570 9 N -0.683 5.683 10 C 0.143 3.857 11 H 0.067 0.933 12 C -0.133 4.133 13 C 0.099 3.901 14 H 0.085 0.915 15 C -0.117 4.117 16 C -0.116 4.116 17 C 0.127 3.873 18 H 0.073 0.927 19 N -0.629 5.629 20 C -0.213 4.213 21 H 0.054 0.946 22 C -0.051 4.051 23 N -0.970 5.970 24 Si 0.948 3.052 25 H -0.270 1.270 26 H -0.318 1.318 27 H -0.237 1.237 28 C 0.039 3.961 29 O -0.188 6.188 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.112 0.888 34 H 0.116 0.884 35 H 0.417 0.583 36 H 0.067 0.933 37 H 0.108 0.892 38 H 0.054 0.946 39 H 0.100 0.900 40 H 0.086 0.914 41 H 0.051 0.949 42 H 0.260 0.740 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.832 -2.964 17.342 33.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.335 6.335 3 C 0.082 3.918 4 C -0.017 4.017 5 N -0.186 5.186 6 C -0.216 4.216 7 C 0.385 3.615 8 O -0.449 6.449 9 N -0.334 5.334 10 C 0.036 3.964 11 H 0.085 0.915 12 C -0.172 4.172 13 C -0.006 4.006 14 H 0.103 0.897 15 C -0.156 4.156 16 C -0.155 4.155 17 C 0.019 3.981 18 H 0.091 0.909 19 N -0.353 5.353 20 C -0.341 4.341 21 H 0.072 0.928 22 C -0.244 4.244 23 N -0.618 5.618 24 Si 0.779 3.221 25 H -0.198 1.198 26 H -0.248 1.248 27 H -0.161 1.161 28 C -0.035 4.035 29 O -0.073 6.073 30 H 0.114 0.886 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.130 0.870 34 H 0.133 0.867 35 H 0.255 0.745 36 H 0.086 0.914 37 H 0.126 0.874 38 H 0.073 0.927 39 H 0.118 0.882 40 H 0.105 0.895 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -27.921 -3.165 16.892 32.787 hybrid contribution 0.644 -0.260 -0.271 0.746 sum -27.276 -3.426 16.622 32.125 Atomic orbital electron populations 1.23022 0.77433 1.04356 1.01988 1.87906 1.22867 1.26812 1.95918 1.20850 0.78460 0.86462 1.05992 1.26403 0.96647 1.00608 0.78015 1.70685 1.00683 1.16423 1.30827 1.21646 0.91804 1.14424 0.93698 1.16994 0.86202 0.75967 0.82320 1.90831 1.25940 1.52272 1.75889 1.45780 1.10659 1.72183 1.04755 1.22192 0.86748 0.97784 0.89653 0.91507 1.23579 1.02416 0.98072 0.93174 1.23865 0.86588 0.94435 0.95688 0.89738 1.22847 0.98689 0.97670 0.96435 1.22796 0.97421 0.98375 0.96930 1.23357 0.93224 0.94588 0.86916 0.90850 1.46886 1.04401 1.78066 1.05907 1.18524 0.86895 1.26540 1.02177 0.92787 1.25587 0.98401 1.02222 0.98177 1.69939 1.28795 1.45296 1.17806 0.85965 0.76827 0.80923 0.78398 1.19819 1.24811 1.16118 1.25866 0.85482 0.96787 0.95372 1.84427 1.16978 1.68200 1.37699 0.88649 0.91745 0.92129 0.86990 0.86678 0.74479 0.91398 0.87383 0.92716 0.88191 0.89523 0.93037 0.93120 0.72623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 11.01 113.37 1.25 1.40 16 2 O -0.42 -5.64 10.69 -148.98 -1.59 -7.23 16 3 C 0.16 1.57 6.56 71.24 0.47 2.04 16 4 C 0.19 3.41 7.93 88.39 0.70 4.11 16 5 N -0.45 -10.04 11.06 -293.03 -3.24 -13.28 16 6 C -0.10 -2.33 6.99 40.41 0.28 -2.05 16 7 C 0.60 17.98 7.81 86.66 0.68 18.66 16 8 O -0.57 -20.99 16.62 -4.05 -0.07 -21.06 16 9 N -0.68 -19.18 3.66 -438.07 -1.60 -20.79 16 10 C 0.14 4.99 3.08 46.63 0.14 5.13 16 11 H 0.07 2.69 7.71 -2.39 -0.02 2.67 16 12 C -0.13 -4.38 6.04 32.75 0.20 -4.18 16 13 C 0.10 3.91 3.64 46.76 0.17 4.08 16 14 H 0.09 3.60 3.42 -2.39 -0.01 3.59 16 15 C -0.12 -3.73 6.46 32.21 0.21 -3.52 16 16 C -0.12 -3.79 6.34 32.21 0.20 -3.59 16 17 C 0.13 5.10 5.30 46.25 0.24 5.34 16 18 H 0.07 3.23 8.14 -2.39 -0.02 3.21 16 19 N -0.63 -30.39 2.78 -612.26 -1.70 -32.09 16 20 C -0.21 -12.68 10.97 84.03 0.92 -11.76 16 21 H 0.05 3.55 8.06 -2.91 -0.02 3.53 16 22 C -0.05 -3.10 5.50 84.86 0.47 -2.63 16 23 N -0.97 -63.46 13.97 21.65 0.30 -63.16 16 24 Si 0.95 46.65 24.67 68.60 1.69 48.34 16 25 H -0.27 -12.40 6.40 99.48 0.64 -11.77 16 26 H -0.32 -16.22 7.11 99.48 0.71 -15.52 16 27 H -0.24 -10.58 4.88 99.48 0.49 -10.10 16 28 C 0.04 0.74 11.95 67.32 0.80 1.55 16 29 O -0.19 -3.31 10.73 0.41 0.00 -3.31 16 30 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.13 8.14 -2.39 -0.02 0.11 16 32 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.42 9.72 7.78 -92.71 -0.72 9.00 16 36 H 0.07 2.41 6.32 -2.38 -0.02 2.39 16 37 H 0.11 2.63 7.42 -2.39 -0.02 2.62 16 38 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.10 2.33 7.90 -2.39 -0.02 2.31 16 40 H 0.09 2.35 6.56 -2.39 -0.02 2.33 16 41 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.26 16.18 8.31 -92.71 -0.77 15.41 16 43 H 0.26 3.30 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -80.19 348.82 0.57 -79.62 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.04 Total: 18.37 kcal Atomic # 6 Polarization: 7.85 SS G_CDS: 6.74 Total: 14.58 kcal Atomic # 7 Polarization: -123.07 SS G_CDS: -6.24 Total: -129.31 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -1.65 Total: -31.60 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 1.69 Total: 48.34 kcal Total: -80.19 0.57 -79.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096259710.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.405 kcal (2) G-P(sol) polarization free energy of solvation -80.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds