Wall clock time and date at job start Tue Mar 31 2020 13:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47360 * 2 1 4 4 C 1.35347 * 116.99929 * 180.02562 * 3 2 1 5 5 N 1.30556 * 125.44497 * 180.02562 * 4 3 2 6 6 C 1.36332 * 108.38189 * 179.69895 * 5 4 3 7 7 C 1.47372 * 126.41334 * 180.26876 * 6 5 4 8 8 O 1.21618 * 119.99771 * 180.18095 * 7 6 5 9 9 N 1.34774 * 119.99839 * 0.18648 * 7 6 5 10 10 C 1.46499 * 119.99905 * 180.02562 * 9 7 6 11 11 H 1.08992 * 110.55880 * 34.29822 * 10 9 7 12 12 C 1.54849 * 110.62273 * 271.39275 * 10 9 7 13 13 C 1.56222 * 103.27606 * 241.54497 * 12 10 9 14 14 H 1.08996 * 116.12750 * 159.09326 * 13 12 10 15 15 C 1.55840 * 105.00304 * 288.07056 * 13 12 10 16 16 C 1.54854 * 103.44768 * 71.87448 * 15 13 12 17 17 C 1.55841 * 103.44680 * 359.97438 * 16 15 13 18 18 H 1.08997 * 115.56036 * 159.55954 * 17 16 15 19 19 N 1.50237 * 101.11489 * 32.83430 * 13 12 10 20 20 C 1.36935 * 130.84147 * 126.07997 * 19 13 12 21 21 H 1.08000 * 120.00356 * 179.97438 * 20 19 13 22 22 C 1.38816 * 120.00016 * 0.02562 * 20 19 13 23 23 N 1.31622 * 119.99494 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00437 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47172 * 59.99730 * 24 22 20 26 26 H 1.48497 * 109.47465 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46849 * 299.99980 * 24 22 20 28 28 C 1.35914 * 107.17568 * 0.42702 * 6 5 4 29 29 O 1.34202 * 125.45158 * 359.97438 * 4 3 2 30 30 H 1.09001 * 109.47456 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47198 * 299.99870 * 1 2 3 32 32 H 1.09002 * 109.46881 * 60.00054 * 1 2 3 33 33 H 1.09001 * 109.47198 * 240.00129 * 2 1 3 34 34 H 1.08999 * 109.47431 * 120.00447 * 2 1 3 35 35 H 0.97003 * 120.00086 * 359.97438 * 9 7 6 36 36 H 1.09003 * 110.63166 * 0.02562 * 12 10 9 37 37 H 1.09005 * 110.62275 * 123.02114 * 12 10 9 38 38 H 1.09002 * 110.62239 * 313.38734 * 15 13 12 39 39 H 1.08994 * 110.76693 * 190.43088 * 15 13 12 40 40 H 1.08999 * 110.62443 * 241.51297 * 16 15 13 41 41 H 1.08999 * 110.62755 * 118.49355 * 16 15 13 42 42 H 0.96996 * 119.99855 * 180.02562 * 23 22 20 43 43 H 1.08002 * 126.46021 * 179.84922 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3482 1.5245 -0.0005 5 7 3.9595 2.6781 -0.0001 6 6 5.3039 2.4523 0.0059 7 6 6.3631 3.4769 0.0139 8 8 7.5325 3.1426 0.0155 9 7 6.0359 4.7843 0.0197 10 6 7.0888 5.8029 0.0272 11 1 7.9514 5.4659 -0.5477 12 6 7.5020 6.1495 1.4787 13 6 7.1521 7.6673 1.5985 14 1 7.0229 8.0517 2.6103 15 6 8.2228 8.3978 0.7333 16 6 7.8125 8.0479 -0.7184 17 6 6.5502 7.1532 -0.5326 18 1 5.8971 7.0749 -1.4017 19 7 5.9483 7.7585 0.7043 20 6 4.6901 8.2434 0.9430 21 1 3.9462 8.2237 0.1602 22 6 4.3710 8.7612 2.1908 23 7 5.2777 8.7857 3.1446 24 14 2.6545 9.4221 2.5167 25 1 1.6599 8.3383 2.3130 26 1 2.5706 9.9137 3.9154 27 1 2.3682 10.5390 1.5808 28 6 5.4846 1.1052 -0.0005 29 8 4.2630 0.5427 -0.0006 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 5.1032 5.0508 0.0182 36 1 6.9239 5.5633 2.1930 37 1 8.5702 5.9872 1.6229 38 1 9.2198 8.0159 0.9531 39 1 8.1812 9.4748 0.8950 40 1 8.6061 7.4926 -1.2184 41 1 7.5648 8.9513 -1.2757 42 1 5.0546 9.1471 4.0166 43 1 6.4309 0.5845 -0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097440450.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:25 Heat of formation + Delta-G solvation = 2.911676 kcal Electronic energy + Delta-G solvation = -27359.327403 eV Core-core repulsion = 23408.537548 eV Total energy + Delta-G solvation = -3950.789855 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.50454 -39.71641 -39.14845 -38.22152 -34.98311 -33.70692 -32.45859 -32.25593 -29.69596 -29.05700 -28.76258 -27.74347 -24.57020 -24.10069 -23.68651 -22.48793 -21.22326 -20.10063 -19.76760 -19.04126 -18.46703 -17.70269 -17.15021 -16.94658 -16.42419 -15.84814 -15.72078 -15.14621 -14.76755 -14.38845 -14.15343 -13.82818 -13.62684 -13.40984 -13.25345 -13.12649 -12.75395 -12.14578 -12.00942 -11.80381 -11.65834 -11.26544 -11.06924 -10.95420 -10.89285 -10.82354 -10.78001 -10.47441 -10.31646 -10.06893 -10.00032 -9.83160 -9.23674 -9.12831 -8.90851 -8.79697 -8.39698 -6.89373 -5.68397 -3.07140 1.09297 1.75856 2.06701 2.59299 3.43079 3.47208 3.47839 3.48049 3.55825 4.40613 4.41090 4.47035 4.51452 4.72437 4.82378 5.03749 5.16887 5.28576 5.31015 5.40766 5.43451 5.60524 5.69482 5.74048 5.77204 5.92519 6.09158 6.14133 6.18888 6.34701 6.46193 6.52413 6.52746 6.65637 6.77606 6.87241 6.99144 7.12206 7.35295 7.46652 7.53950 7.84530 8.04059 8.22556 8.55899 9.13506 9.76766 10.56983 11.40779 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011298 B = 0.003979 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.783988 B = 7034.851320 C = 9001.404429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.052 3.948 3 O -0.244 6.244 4 C 0.380 3.620 5 N -0.448 5.448 6 C -0.037 4.037 7 C 0.596 3.404 8 O -0.548 6.548 9 N -0.682 5.682 10 C 0.126 3.874 11 H 0.081 0.919 12 C -0.143 4.143 13 C 0.154 3.846 14 H 0.154 0.846 15 C -0.139 4.139 16 C -0.127 4.127 17 C 0.125 3.875 18 H 0.089 0.911 19 N -0.589 5.589 20 C -0.213 4.213 21 H 0.078 0.922 22 C -0.009 4.009 23 N -0.921 5.921 24 Si 0.915 3.085 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.008 4.008 29 O -0.229 6.229 30 H 0.086 0.914 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.413 0.587 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.048 0.952 39 H 0.055 0.945 40 H 0.052 0.948 41 H 0.057 0.943 42 H 0.254 0.746 43 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.751 -17.185 -6.869 18.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.023 4.023 3 O -0.152 6.152 4 C 0.133 3.867 5 N -0.194 5.194 6 C -0.156 4.156 7 C 0.380 3.620 8 O -0.428 6.428 9 N -0.330 5.330 10 C 0.020 3.980 11 H 0.099 0.901 12 C -0.184 4.184 13 C 0.048 3.952 14 H 0.170 0.830 15 C -0.178 4.178 16 C -0.167 4.167 17 C 0.016 3.984 18 H 0.107 0.893 19 N -0.310 5.310 20 C -0.340 4.340 21 H 0.096 0.904 22 C -0.205 4.205 23 N -0.569 5.569 24 Si 0.745 3.255 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.080 4.080 29 O -0.120 6.120 30 H 0.105 0.895 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.250 0.750 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.074 0.926 40 H 0.070 0.930 41 H 0.076 0.924 42 H 0.064 0.936 43 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -2.744 -16.574 -6.668 18.075 hybrid contribution -1.046 -0.486 0.181 1.168 sum -3.790 -17.060 -6.487 18.641 Atomic orbital electron populations 1.21811 0.91287 1.03516 1.04346 1.23032 0.96848 0.79544 1.02911 1.86407 1.09005 1.30568 1.89264 1.23323 0.83432 0.81597 0.98314 1.71214 1.04012 1.21297 1.22834 1.21886 0.90289 0.94156 1.09316 1.16671 0.85944 0.82105 0.77273 1.90787 1.17882 1.81587 1.52503 1.45894 1.11976 1.04352 1.70771 1.22732 0.89188 0.87788 0.98249 0.90097 1.23530 0.98930 1.00895 0.94997 1.23826 0.83308 0.89811 0.98276 0.82968 1.23070 0.98351 1.00660 0.95753 1.22878 0.97166 0.99222 0.97463 1.23154 0.93328 0.90449 0.91422 0.89314 1.46521 1.08533 1.69139 1.06779 1.18972 0.86106 1.32309 0.96663 0.90393 1.24679 0.98020 1.01837 0.95965 1.69447 1.32398 1.51464 1.03582 0.86142 0.83660 0.78693 0.76957 1.21189 1.21672 1.21309 1.24908 0.85706 0.92936 1.04475 1.84362 1.16275 1.39256 1.72141 0.89547 0.90863 0.90940 0.90907 0.90865 0.75041 0.92164 0.92644 0.93326 0.92631 0.92972 0.92395 0.93564 0.74877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.28 37.16 0.38 -0.46 16 2 C 0.05 0.38 6.38 37.16 0.24 0.62 16 3 O -0.24 -2.98 10.19 -40.96 -0.42 -3.39 16 4 C 0.38 5.32 8.98 52.22 0.47 5.79 16 5 N -0.45 -7.52 11.10 -11.71 -0.13 -7.65 16 6 C -0.04 -0.60 6.99 -82.98 -0.58 -1.18 16 7 C 0.60 10.87 7.81 -12.54 -0.10 10.78 16 8 O -0.55 -10.77 16.57 5.26 0.09 -10.69 16 9 N -0.68 -13.00 5.08 -52.52 -0.27 -13.27 16 10 C 0.13 2.45 2.75 -65.47 -0.18 2.27 16 11 H 0.08 1.52 7.29 -51.93 -0.38 1.14 16 12 C -0.14 -3.01 6.25 -24.03 -0.15 -3.16 16 13 C 0.15 3.58 4.73 -62.59 -0.30 3.28 16 14 H 0.15 4.04 5.52 -51.93 -0.29 3.76 16 15 C -0.14 -2.78 6.44 -24.24 -0.16 -2.93 16 16 C -0.13 -2.34 6.44 -24.24 -0.16 -2.50 16 17 C 0.13 2.52 5.05 -62.81 -0.32 2.20 16 18 H 0.09 1.70 8.14 -51.93 -0.42 1.27 16 19 N -0.59 -14.34 2.99 -145.60 -0.44 -14.77 16 20 C -0.21 -5.73 10.59 -15.06 -0.16 -5.89 16 21 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 22 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 23 N -0.92 -26.31 10.47 55.49 0.58 -25.72 16 24 Si 0.91 22.06 29.55 -169.99 -5.02 17.03 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 C -0.01 -0.10 11.93 29.90 0.36 0.26 16 29 O -0.23 -2.75 10.20 -17.75 -0.18 -2.93 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.41 8.23 8.37 -40.82 -0.34 7.89 16 36 H 0.06 1.38 7.98 -51.93 -0.41 0.97 16 37 H 0.05 1.07 7.82 -51.93 -0.41 0.66 16 38 H 0.05 0.86 7.82 -51.93 -0.41 0.46 16 39 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.05 0.84 7.82 -51.93 -0.41 0.43 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 43 H 0.24 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 359.53 15.07 5.42 5.42 Total: -1.00 -31.77 359.53 -7.10 -38.88 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -5.99 Total: 8.36 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: -0.74 Total: 8.74 kcal Atomic # 7 Polarization: -61.17 SS G_CDS: -0.25 Total: -61.42 kcal Atomic # 8 Polarization: -16.50 SS G_CDS: -0.51 Total: -17.01 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.77 -7.10 -38.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097440450.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.789 kcal (2) G-P(sol) polarization free energy of solvation -31.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds