Wall clock time and date at job start Tue Mar 31 2020 13:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42901 * 109.47360 * 2 1 4 4 C 1.35347 * 116.99929 * 180.02562 * 3 2 1 5 5 N 1.30556 * 125.44497 * 180.02562 * 4 3 2 6 6 C 1.36332 * 108.38189 * 179.69895 * 5 4 3 7 7 C 1.47372 * 126.41334 * 180.26876 * 6 5 4 8 8 O 1.21618 * 119.99771 * 180.18095 * 7 6 5 9 9 N 1.34774 * 119.99839 * 0.18648 * 7 6 5 10 10 C 1.46499 * 119.99905 * 180.02562 * 9 7 6 11 11 H 1.08992 * 110.55880 * 34.29822 * 10 9 7 12 12 C 1.54849 * 110.62273 * 271.39275 * 10 9 7 13 13 C 1.56222 * 103.27606 * 241.54497 * 12 10 9 14 14 H 1.08996 * 116.12750 * 159.09326 * 13 12 10 15 15 C 1.55840 * 105.00304 * 288.07056 * 13 12 10 16 16 C 1.54854 * 103.44768 * 71.87448 * 15 13 12 17 17 C 1.55841 * 103.44680 * 359.97438 * 16 15 13 18 18 H 1.08997 * 115.56036 * 159.55954 * 17 16 15 19 19 N 1.50237 * 101.11489 * 32.83430 * 13 12 10 20 20 C 1.36935 * 130.84147 * 126.07997 * 19 13 12 21 21 H 1.08000 * 120.00356 * 179.97438 * 20 19 13 22 22 C 1.38816 * 120.00016 * 0.02562 * 20 19 13 23 23 N 1.31622 * 119.99494 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00437 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47172 * 59.99730 * 24 22 20 26 26 H 1.48497 * 109.47465 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46849 * 299.99980 * 24 22 20 28 28 C 1.35914 * 107.17568 * 0.42702 * 6 5 4 29 29 O 1.34202 * 125.45158 * 359.97438 * 4 3 2 30 30 H 1.09001 * 109.47456 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47198 * 299.99870 * 1 2 3 32 32 H 1.09002 * 109.46881 * 60.00054 * 1 2 3 33 33 H 1.09001 * 109.47198 * 240.00129 * 2 1 3 34 34 H 1.08999 * 109.47431 * 120.00447 * 2 1 3 35 35 H 0.97003 * 120.00086 * 359.97438 * 9 7 6 36 36 H 1.09003 * 110.63166 * 0.02562 * 12 10 9 37 37 H 1.09005 * 110.62275 * 123.02114 * 12 10 9 38 38 H 1.09002 * 110.62239 * 313.38734 * 15 13 12 39 39 H 1.08994 * 110.76693 * 190.43088 * 15 13 12 40 40 H 1.08999 * 110.62443 * 241.51297 * 16 15 13 41 41 H 1.08999 * 110.62755 * 118.49355 * 16 15 13 42 42 H 0.96996 * 119.99855 * 180.02562 * 23 22 20 43 43 H 1.08002 * 126.46021 * 179.84922 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3482 1.5245 -0.0005 5 7 3.9595 2.6781 -0.0001 6 6 5.3039 2.4523 0.0059 7 6 6.3631 3.4769 0.0139 8 8 7.5325 3.1426 0.0155 9 7 6.0359 4.7843 0.0197 10 6 7.0888 5.8029 0.0272 11 1 7.9514 5.4659 -0.5477 12 6 7.5020 6.1495 1.4787 13 6 7.1521 7.6673 1.5985 14 1 7.0229 8.0517 2.6103 15 6 8.2228 8.3978 0.7333 16 6 7.8125 8.0479 -0.7184 17 6 6.5502 7.1532 -0.5326 18 1 5.8971 7.0749 -1.4017 19 7 5.9483 7.7585 0.7043 20 6 4.6901 8.2434 0.9430 21 1 3.9462 8.2237 0.1602 22 6 4.3710 8.7612 2.1908 23 7 5.2777 8.7857 3.1446 24 14 2.6545 9.4221 2.5167 25 1 1.6599 8.3383 2.3130 26 1 2.5706 9.9137 3.9154 27 1 2.3682 10.5390 1.5808 28 6 5.4846 1.1052 -0.0005 29 8 4.2630 0.5427 -0.0006 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 5.1032 5.0508 0.0182 36 1 6.9239 5.5633 2.1930 37 1 8.5702 5.9872 1.6229 38 1 9.2198 8.0159 0.9531 39 1 8.1812 9.4748 0.8950 40 1 8.6061 7.4926 -1.2184 41 1 7.5648 8.9513 -1.2757 42 1 5.0546 9.1471 4.0166 43 1 6.4309 0.5845 -0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097440450.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:24 Heat of formation + Delta-G solvation = -21.291135 kcal Electronic energy + Delta-G solvation = -27360.376916 eV Core-core repulsion = 23408.537548 eV Total energy + Delta-G solvation = -3951.839368 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.55690 -41.25589 -40.09421 -39.68163 -36.10501 -35.27183 -34.37334 -32.88811 -30.95205 -30.81540 -30.31059 -29.32963 -26.21534 -25.46656 -24.54026 -23.55221 -22.54201 -21.52498 -21.39205 -20.44911 -19.87770 -18.84398 -18.66083 -18.36496 -17.41652 -17.23877 -16.75153 -16.60209 -16.10361 -15.93253 -15.69026 -15.45182 -14.98638 -14.70636 -14.29243 -13.94543 -13.72143 -13.64828 -13.58144 -12.91478 -12.89048 -12.77604 -12.70175 -12.68854 -12.51555 -12.10449 -11.97948 -11.88052 -11.87236 -11.80286 -11.70516 -11.44048 -11.00584 -10.92245 -10.74710 -10.05492 -9.73924 -8.85197 -7.74640 -5.13819 0.02075 0.81149 0.90868 1.48066 1.50629 1.55774 1.67448 2.15074 2.23812 2.51554 3.34245 3.39292 3.46468 3.72278 3.91317 3.94534 4.00679 4.08311 4.10458 4.24682 4.29003 4.37664 4.47879 4.50063 4.62345 4.66641 4.71450 4.82520 4.84834 4.85187 4.93200 5.10478 5.16718 5.18909 5.21234 5.40326 5.52109 5.57479 5.63220 5.71951 5.92129 6.29412 6.35891 6.61979 7.07708 7.11285 7.74106 8.59717 9.32419 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011298 B = 0.003979 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2477.783988 B = 7034.851320 C = 9001.404429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.041 3.959 3 O -0.260 6.260 4 C 0.384 3.616 5 N -0.490 5.490 6 C -0.079 4.079 7 C 0.599 3.401 8 O -0.565 6.565 9 N -0.690 5.690 10 C 0.137 3.863 11 H 0.097 0.903 12 C -0.133 4.133 13 C 0.140 3.860 14 H 0.115 0.885 15 C -0.131 4.131 16 C -0.117 4.117 17 C 0.123 3.877 18 H 0.098 0.902 19 N -0.611 5.611 20 C -0.215 4.215 21 H 0.080 0.920 22 C -0.066 4.066 23 N -0.947 5.947 24 Si 0.972 3.028 25 H -0.284 1.284 26 H -0.297 1.297 27 H -0.279 1.279 28 C 0.032 3.968 29 O -0.213 6.213 30 H 0.114 0.886 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.407 0.593 36 H 0.030 0.970 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.038 0.962 40 H 0.086 0.914 41 H 0.059 0.941 42 H 0.245 0.755 43 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.494 -19.295 -8.457 21.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 O -0.168 6.168 4 C 0.137 3.863 5 N -0.236 5.236 6 C -0.197 4.197 7 C 0.385 3.615 8 O -0.446 6.446 9 N -0.337 5.337 10 C 0.031 3.969 11 H 0.115 0.885 12 C -0.173 4.173 13 C 0.033 3.967 14 H 0.133 0.867 15 C -0.170 4.170 16 C -0.156 4.156 17 C 0.016 3.984 18 H 0.116 0.884 19 N -0.332 5.332 20 C -0.344 4.344 21 H 0.098 0.902 22 C -0.258 4.258 23 N -0.597 5.597 24 Si 0.802 3.198 25 H -0.211 1.211 26 H -0.224 1.224 27 H -0.206 1.206 28 C -0.041 4.041 29 O -0.104 6.104 30 H 0.133 0.867 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.103 0.897 35 H 0.242 0.758 36 H 0.049 0.951 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.057 0.943 40 H 0.105 0.895 41 H 0.078 0.922 42 H 0.055 0.945 43 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -2.484 -18.709 -8.291 20.614 hybrid contribution -1.161 0.030 0.654 1.333 sum -3.645 -18.679 -7.637 20.506 Atomic orbital electron populations 1.21870 0.89898 1.05137 1.03731 1.23462 0.97907 0.77687 1.04260 1.86438 1.07922 1.33495 1.88993 1.23280 0.84209 0.81393 0.97395 1.71080 1.04785 1.23187 1.24587 1.21639 0.89794 0.95003 1.13235 1.16888 0.86334 0.82057 0.76221 1.90759 1.18619 1.81812 1.53376 1.45906 1.11428 1.04908 1.71418 1.22595 0.89726 0.87628 0.96910 0.88510 1.23397 0.99562 0.98823 0.95557 1.23670 0.84318 0.91533 0.97163 0.86727 1.22956 0.98571 0.99275 0.96183 1.22823 0.97046 0.99278 0.96463 1.23376 0.93980 0.90767 0.90266 0.88398 1.46711 1.08176 1.69510 1.08818 1.19285 0.87453 1.31084 0.96579 0.90190 1.25387 1.01056 1.03203 0.96171 1.69703 1.33681 1.52814 1.03482 0.85234 0.80170 0.78114 0.76316 1.21092 1.22354 1.20562 1.25601 0.86660 0.91767 1.00043 1.84414 1.15956 1.38399 1.71624 0.86725 0.91689 0.91340 0.89305 0.89730 0.75788 0.95134 0.90691 0.90675 0.94291 0.89537 0.92189 0.94513 0.71169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 10.28 71.98 0.74 -0.64 16 2 C 0.04 0.53 6.38 71.98 0.46 0.99 16 3 O -0.26 -6.09 10.19 -64.16 -0.65 -6.75 16 4 C 0.38 10.36 8.98 130.43 1.17 11.53 16 5 N -0.49 -16.37 11.10 -419.38 -4.65 -21.03 16 6 C -0.08 -2.45 6.99 40.31 0.28 -2.17 16 7 C 0.60 21.43 7.81 86.65 0.68 22.11 16 8 O -0.56 -21.34 16.57 -4.09 -0.07 -21.41 16 9 N -0.69 -26.19 5.08 -438.33 -2.23 -28.41 16 10 C 0.14 5.17 2.75 46.58 0.13 5.30 16 11 H 0.10 3.38 7.29 -2.39 -0.02 3.36 16 12 C -0.13 -5.57 6.25 32.35 0.20 -5.37 16 13 C 0.14 6.57 4.73 46.36 0.22 6.79 16 14 H 0.12 6.37 5.52 -2.39 -0.01 6.35 16 15 C -0.13 -5.07 6.44 32.21 0.21 -4.86 16 16 C -0.12 -4.00 6.44 32.21 0.21 -3.79 16 17 C 0.12 4.82 5.05 46.20 0.23 5.05 16 18 H 0.10 3.62 8.14 -2.39 -0.02 3.60 16 19 N -0.61 -30.02 2.99 -614.57 -1.84 -31.85 16 20 C -0.22 -11.79 10.59 84.03 0.89 -10.90 16 21 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 22 C -0.07 -3.71 5.50 84.86 0.47 -3.24 16 23 N -0.95 -56.19 10.47 21.65 0.23 -55.96 16 24 Si 0.97 46.44 29.55 68.60 2.03 48.47 16 25 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 26 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 27 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 28 C 0.03 0.71 11.93 67.28 0.80 1.51 16 29 O -0.21 -4.60 10.20 18.89 0.19 -4.40 16 30 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.41 16.52 8.37 -92.71 -0.78 15.74 16 36 H 0.03 1.43 7.98 -2.39 -0.02 1.41 16 37 H 0.07 2.79 7.82 -2.38 -0.02 2.77 16 38 H 0.07 2.49 7.82 -2.39 -0.02 2.47 16 39 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.09 2.42 7.82 -2.39 -0.02 2.40 16 41 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 42 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 43 H 0.27 3.68 8.06 -2.91 -0.02 3.66 16 Total: -1.00 -70.86 359.53 -0.04 -70.90 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: 0.27 Total: 28.15 kcal Atomic # 6 Polarization: 15.61 SS G_CDS: 6.69 Total: 22.30 kcal Atomic # 7 Polarization: -128.77 SS G_CDS: -8.49 Total: -137.26 kcal Atomic # 8 Polarization: -32.03 SS G_CDS: -0.53 Total: -32.56 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -70.86 -0.04 -70.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097440450.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.604 kcal (2) G-P(sol) polarization free energy of solvation -70.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds