Wall clock time and date at job start Tue Mar 31 2020 13:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42895 * 109.47605 * 2 1 4 4 C 1.35733 * 117.00455 * 179.97438 * 3 2 1 5 5 C 1.41854 * 126.78645 * 180.02562 * 4 3 2 6 6 C 1.36662 * 103.80964 * 180.02562 * 5 4 3 7 7 C 1.47542 * 126.88018 * 179.97438 * 6 5 4 8 8 O 1.21583 * 119.99892 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00165 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27934 * 9 7 6 11 11 H 1.08997 * 110.56392 * 36.17005 * 10 9 7 12 12 C 1.54857 * 110.62617 * 273.26667 * 10 9 7 13 13 C 1.55842 * 103.44548 * 241.51215 * 12 10 9 14 14 H 1.09002 * 115.55911 * 158.80770 * 13 12 10 15 15 C 1.55839 * 105.06312 * 288.17391 * 13 12 10 16 16 C 1.54855 * 103.44718 * 71.82766 * 15 13 12 17 17 C 1.55846 * 110.62520 * 159.24204 * 10 9 7 18 18 H 1.08991 * 115.56299 * 319.67424 * 17 10 9 19 19 N 1.50243 * 101.04985 * 85.54965 * 17 10 9 20 20 C 1.36933 * 130.83964 * 233.94538 * 19 17 10 21 21 H 1.08000 * 119.99841 * 0.02562 * 20 19 17 22 22 C 1.38811 * 119.99877 * 180.02562 * 20 19 17 23 23 N 1.31611 * 120.00139 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99511 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47262 * 90.00413 * 24 22 20 26 26 H 1.48499 * 109.46766 * 210.00086 * 24 22 20 27 27 H 1.48497 * 109.47124 * 329.99919 * 24 22 20 28 28 O 1.34662 * 106.24023 * 0.24507 * 6 5 4 29 29 N 1.20871 * 111.63603 * 359.56068 * 28 6 5 30 30 H 1.08992 * 109.46897 * 299.99798 * 1 2 3 31 31 H 1.09000 * 109.46745 * 59.99524 * 1 2 3 32 32 H 1.08994 * 109.47384 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47240 * 240.00076 * 2 1 3 34 34 H 1.09002 * 109.47246 * 120.00403 * 2 1 3 35 35 H 1.07999 * 128.09249 * 0.04890 * 5 4 3 36 36 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 37 37 H 1.08999 * 110.62000 * 0.02562 * 12 10 9 38 38 H 1.08999 * 110.62734 * 122.86055 * 12 10 9 39 39 H 1.09000 * 110.62721 * 190.31008 * 15 13 12 40 40 H 1.08997 * 110.62861 * 313.33714 * 15 13 12 41 41 H 1.09002 * 110.62273 * 241.51021 * 16 15 13 42 42 H 1.08997 * 110.76692 * 118.55534 * 16 15 13 43 43 H 0.97006 * 120.00240 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3520 1.5250 0.0005 5 6 4.0453 2.7626 0.0012 6 6 5.3626 2.3986 0.0009 7 6 6.5304 3.3002 0.0008 8 8 6.3681 4.5052 0.0014 9 7 7.7771 2.7882 0.0001 10 6 8.9367 3.6836 0.0062 11 1 8.7353 4.5667 0.6126 12 6 9.3200 4.0895 -1.4382 13 6 10.7668 3.5330 -1.5992 14 1 11.1016 3.3833 -2.6256 15 6 11.6569 4.4571 -0.7147 16 6 11.2736 4.0512 0.7297 17 6 10.2040 2.9371 0.5213 18 1 10.0433 2.2627 1.3623 19 7 10.6969 2.2982 -0.7461 20 6 10.9920 0.9925 -1.0347 21 1 10.8767 0.2325 -0.2762 22 6 11.4394 0.6460 -2.3022 23 7 11.5804 1.5723 -3.2264 24 14 11.8413 -1.1354 -2.6960 25 1 10.6254 -1.8151 -3.2105 26 1 12.9097 -1.1856 -3.7262 27 1 12.3084 -1.8213 -1.4646 28 8 5.3812 1.0521 -0.0053 29 7 4.2639 0.5909 -0.0001 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.6294 3.7593 0.0020 36 1 7.9066 1.8269 0.0000 37 1 8.6471 3.6250 -2.1589 38 1 9.3087 5.1739 -1.5482 39 1 12.7136 4.2642 -0.9001 40 1 11.4195 5.5056 -0.8947 41 1 10.8461 4.8984 1.2659 42 1 12.1389 3.6578 1.2631 43 1 11.8927 1.3300 -4.1123 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097555429.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:46 Heat of formation + Delta-G solvation = 40.505309 kcal Electronic energy + Delta-G solvation = -27267.634692 eV Core-core repulsion = 23318.475019 eV Total energy + Delta-G solvation = -3949.159673 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -45.03283 -39.90700 -39.19496 -38.45307 -34.15882 -33.54258 -32.60192 -31.99476 -31.36612 -29.15190 -28.91802 -27.88356 -24.78375 -24.19942 -23.51011 -23.16501 -21.33224 -20.43053 -19.92210 -19.03553 -18.43789 -18.02999 -17.04945 -17.03343 -16.18821 -16.06404 -15.92114 -14.91242 -14.80001 -14.54515 -14.28367 -13.90326 -13.69708 -13.59351 -13.37301 -13.05645 -12.88542 -12.19438 -12.10082 -11.89372 -11.46131 -11.44348 -11.35763 -11.15398 -10.96172 -10.90859 -10.59473 -10.42894 -10.22665 -10.11387 -9.94052 -9.92184 -9.46503 -9.34819 -9.22485 -9.00292 -8.65479 -6.98841 -5.76975 -3.16401 0.74773 1.99652 2.41210 2.63060 3.11315 3.36550 3.41783 3.43431 3.51364 3.98172 4.39088 4.54302 4.56690 4.68946 4.90316 4.94002 5.06149 5.08882 5.28550 5.32198 5.39994 5.55696 5.58787 5.62299 5.65073 5.83170 5.99566 6.00661 6.09541 6.21097 6.35711 6.43039 6.54237 6.65978 6.76047 6.78279 6.88442 6.98255 7.26709 7.44561 7.63335 7.76341 7.99433 8.13899 8.23535 9.04654 9.68209 10.47597 11.32028 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013811 B = 0.003433 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.934977 B = 8153.559413 C = 9684.599892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.282 6.282 4 C 0.204 3.796 5 C -0.163 4.163 6 C -0.046 4.046 7 C 0.598 3.402 8 O -0.520 6.520 9 N -0.684 5.684 10 C 0.126 3.874 11 H 0.084 0.916 12 C -0.144 4.144 13 C 0.154 3.846 14 H 0.154 0.846 15 C -0.138 4.138 16 C -0.127 4.127 17 C 0.126 3.874 18 H 0.091 0.909 19 N -0.590 5.590 20 C -0.216 4.216 21 H 0.079 0.921 22 C -0.008 4.008 23 N -0.919 5.919 24 Si 0.915 3.085 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 O 0.120 5.880 29 N -0.392 5.392 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.189 0.811 36 H 0.411 0.589 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.058 0.942 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.646 1.277 7.165 16.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.189 6.189 4 C 0.007 3.993 5 C -0.186 4.186 6 C -0.113 4.113 7 C 0.380 3.620 8 O -0.397 6.397 9 N -0.332 5.332 10 C 0.020 3.980 11 H 0.102 0.898 12 C -0.184 4.184 13 C 0.047 3.953 14 H 0.171 0.829 15 C -0.178 4.178 16 C -0.167 4.167 17 C 0.017 3.983 18 H 0.109 0.891 19 N -0.311 5.311 20 C -0.344 4.344 21 H 0.097 0.903 22 C -0.204 4.204 23 N -0.567 5.567 24 Si 0.745 3.255 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.207 1.207 28 O 0.054 5.946 29 N -0.115 5.115 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.206 0.794 36 H 0.246 0.754 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.908 0.741 6.957 16.468 hybrid contribution -0.049 -0.844 -0.237 0.879 sum -14.957 -0.104 6.720 16.397 Atomic orbital electron populations 1.21791 0.92169 1.03202 1.03653 1.22840 0.95865 0.80592 1.02564 1.86202 1.13056 1.30240 1.89415 1.21835 0.85787 0.90550 1.01127 1.22129 0.90104 0.99135 1.07209 1.24299 0.96823 0.84244 1.05899 1.16511 0.81262 0.86007 0.78266 1.90848 1.84919 1.12765 1.51208 1.45992 1.04554 1.11849 1.70815 1.22848 0.84375 0.92149 0.98614 0.89820 1.23494 1.01132 0.98993 0.94806 1.23776 0.89738 0.82987 0.98794 0.82913 1.23055 1.00835 0.98212 0.95691 1.22867 0.98822 0.97546 0.97437 1.23172 0.91083 0.92896 0.91177 0.89140 1.46553 1.75075 1.03246 1.06193 1.19006 1.37245 0.82001 0.96155 0.90280 1.24695 1.01949 0.97755 0.96016 1.69449 1.52457 1.30878 1.03873 0.86072 0.77711 0.83925 0.77764 1.21632 1.21725 1.20749 1.84992 1.22675 1.18710 1.68186 1.74013 0.90465 1.22211 1.24844 0.91362 0.91327 0.89955 0.91464 0.91523 0.79414 0.75360 0.92054 0.92464 0.92549 0.93224 0.92905 0.92296 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.59 16 2 C 0.06 0.53 6.38 37.16 0.24 0.76 16 3 O -0.28 -3.43 10.21 -18.91 -0.19 -3.62 16 4 C 0.20 2.79 8.00 -16.72 -0.13 2.66 16 5 C -0.16 -2.17 10.97 -38.77 -0.43 -2.60 16 6 C -0.05 -0.68 7.29 -36.36 -0.26 -0.94 16 7 C 0.60 9.72 7.82 -12.47 -0.10 9.63 16 8 O -0.52 -9.56 16.63 5.29 0.09 -9.47 16 9 N -0.68 -11.29 5.09 -52.43 -0.27 -11.56 16 10 C 0.13 2.20 2.73 -65.43 -0.18 2.02 16 11 H 0.08 1.42 7.36 -51.93 -0.38 1.03 16 12 C -0.14 -2.80 6.22 -24.23 -0.15 -2.95 16 13 C 0.15 3.36 4.72 -62.80 -0.30 3.07 16 14 H 0.15 3.88 5.52 -51.93 -0.29 3.60 16 15 C -0.14 -2.61 6.44 -24.24 -0.16 -2.77 16 16 C -0.13 -2.17 6.44 -24.23 -0.16 -2.32 16 17 C 0.13 2.31 5.04 -62.80 -0.32 1.99 16 18 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 19 N -0.59 -13.44 2.99 -145.82 -0.44 -13.88 16 20 C -0.22 -5.51 10.59 -15.06 -0.16 -5.67 16 21 H 0.08 1.94 7.83 -52.49 -0.41 1.53 16 22 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 23 N -0.92 -25.30 10.46 55.49 0.58 -24.72 16 24 Si 0.91 21.22 29.55 -169.99 -5.02 16.19 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 28 O 0.12 1.79 11.03 15.50 0.17 1.96 16 29 N -0.39 -5.76 11.50 30.47 0.35 -5.41 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.19 2.14 8.06 -52.49 -0.42 1.71 16 36 H 0.41 6.68 8.45 -40.82 -0.34 6.34 16 37 H 0.06 1.30 7.98 -51.93 -0.41 0.89 16 38 H 0.06 1.03 7.82 -51.93 -0.41 0.62 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 40 H 0.05 0.83 7.82 -51.93 -0.41 0.42 16 41 H 0.05 0.78 7.82 -51.93 -0.41 0.38 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 359.29 15.07 5.41 5.41 Total: -1.00 -29.00 359.29 -7.12 -36.12 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -6.00 Total: 7.01 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -1.81 Total: 1.97 kcal Atomic # 7 Polarization: -55.79 SS G_CDS: 0.23 Total: -55.57 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.07 Total: -11.13 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.00 -7.12 -36.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097555429.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.625 kcal (2) G-P(sol) polarization free energy of solvation -28.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds