Wall clock time and date at job start Tue Mar 31 2020 13:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42895 * 109.47605 * 2 1 4 4 C 1.35733 * 117.00455 * 179.97438 * 3 2 1 5 5 C 1.41854 * 126.78645 * 180.02562 * 4 3 2 6 6 C 1.36662 * 103.80964 * 180.02562 * 5 4 3 7 7 C 1.47542 * 126.88018 * 179.97438 * 6 5 4 8 8 O 1.21583 * 119.99892 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00165 * 180.02562 * 7 6 5 10 10 C 1.46498 * 119.99828 * 180.27934 * 9 7 6 11 11 H 1.08997 * 110.56392 * 36.17005 * 10 9 7 12 12 C 1.54857 * 110.62617 * 273.26667 * 10 9 7 13 13 C 1.55842 * 103.44548 * 241.51215 * 12 10 9 14 14 H 1.09002 * 115.55911 * 158.80770 * 13 12 10 15 15 C 1.55839 * 105.06312 * 288.17391 * 13 12 10 16 16 C 1.54855 * 103.44718 * 71.82766 * 15 13 12 17 17 C 1.55846 * 110.62520 * 159.24204 * 10 9 7 18 18 H 1.08991 * 115.56299 * 319.67424 * 17 10 9 19 19 N 1.50243 * 101.04985 * 85.54965 * 17 10 9 20 20 C 1.36933 * 130.83964 * 233.94538 * 19 17 10 21 21 H 1.08000 * 119.99841 * 0.02562 * 20 19 17 22 22 C 1.38811 * 119.99877 * 180.02562 * 20 19 17 23 23 N 1.31611 * 120.00139 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99511 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47262 * 90.00413 * 24 22 20 26 26 H 1.48499 * 109.46766 * 210.00086 * 24 22 20 27 27 H 1.48497 * 109.47124 * 329.99919 * 24 22 20 28 28 O 1.34662 * 106.24023 * 0.24507 * 6 5 4 29 29 N 1.20871 * 111.63603 * 359.56068 * 28 6 5 30 30 H 1.08992 * 109.46897 * 299.99798 * 1 2 3 31 31 H 1.09000 * 109.46745 * 59.99524 * 1 2 3 32 32 H 1.08994 * 109.47384 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47240 * 240.00076 * 2 1 3 34 34 H 1.09002 * 109.47246 * 120.00403 * 2 1 3 35 35 H 1.07999 * 128.09249 * 0.04890 * 5 4 3 36 36 H 0.97001 * 119.99727 * 359.97438 * 9 7 6 37 37 H 1.08999 * 110.62000 * 0.02562 * 12 10 9 38 38 H 1.08999 * 110.62734 * 122.86055 * 12 10 9 39 39 H 1.09000 * 110.62721 * 190.31008 * 15 13 12 40 40 H 1.08997 * 110.62861 * 313.33714 * 15 13 12 41 41 H 1.09002 * 110.62273 * 241.51021 * 16 15 13 42 42 H 1.08997 * 110.76692 * 118.55534 * 16 15 13 43 43 H 0.97006 * 120.00240 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3520 1.5250 0.0005 5 6 4.0453 2.7626 0.0012 6 6 5.3626 2.3986 0.0009 7 6 6.5304 3.3002 0.0008 8 8 6.3681 4.5052 0.0014 9 7 7.7771 2.7882 0.0001 10 6 8.9367 3.6836 0.0062 11 1 8.7353 4.5667 0.6126 12 6 9.3200 4.0895 -1.4382 13 6 10.7668 3.5330 -1.5992 14 1 11.1016 3.3833 -2.6256 15 6 11.6569 4.4571 -0.7147 16 6 11.2736 4.0512 0.7297 17 6 10.2040 2.9371 0.5213 18 1 10.0433 2.2627 1.3623 19 7 10.6969 2.2982 -0.7461 20 6 10.9920 0.9925 -1.0347 21 1 10.8767 0.2325 -0.2762 22 6 11.4394 0.6460 -2.3022 23 7 11.5804 1.5723 -3.2264 24 14 11.8413 -1.1354 -2.6960 25 1 10.6254 -1.8151 -3.2105 26 1 12.9097 -1.1856 -3.7262 27 1 12.3084 -1.8213 -1.4646 28 8 5.3812 1.0521 -0.0053 29 7 4.2639 0.5909 -0.0001 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.6294 3.7593 0.0020 36 1 7.9066 1.8269 0.0000 37 1 8.6471 3.6250 -2.1589 38 1 9.3087 5.1739 -1.5482 39 1 12.7136 4.2642 -0.9001 40 1 11.4195 5.5056 -0.8947 41 1 10.8461 4.8984 1.2659 42 1 12.1389 3.6578 1.2631 43 1 11.8927 1.3300 -4.1123 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097555429.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:04:46 Heat of formation + Delta-G solvation = 21.189784 kcal Electronic energy + Delta-G solvation = -27268.472276 eV Core-core repulsion = 23318.475019 eV Total energy + Delta-G solvation = -3949.997257 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -46.13885 -41.34390 -40.12826 -39.90069 -35.53549 -34.60927 -34.41959 -33.10312 -32.15969 -30.93680 -30.40334 -29.38846 -26.23112 -25.64952 -24.55740 -24.16532 -22.58254 -21.62636 -21.54958 -20.49536 -19.81312 -19.13563 -18.81169 -18.04529 -17.44522 -17.11763 -17.02434 -16.73701 -16.00198 -15.94321 -15.58167 -15.45756 -15.06019 -14.80601 -14.40825 -14.10192 -13.71466 -13.63528 -13.56063 -12.98974 -12.89922 -12.87926 -12.73612 -12.68376 -12.40351 -12.15796 -12.07506 -11.93761 -11.85683 -11.72112 -11.54120 -11.04997 -11.01709 -10.90522 -10.75121 -10.49389 -10.08133 -8.84101 -7.73177 -5.12284 -0.41075 0.92044 1.43702 1.47539 1.50807 1.51557 1.58801 1.85373 2.29728 2.52785 2.93184 3.40167 3.48629 3.56720 3.74722 3.90493 3.90988 4.02529 4.07689 4.10830 4.25341 4.31084 4.49591 4.51335 4.54110 4.67478 4.69562 4.77891 4.84358 4.87360 4.95399 5.10565 5.13928 5.21196 5.23371 5.43052 5.48791 5.58618 5.72939 5.82971 5.94086 6.29995 6.34229 6.83466 6.94143 7.09840 7.76368 8.61193 9.33940 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.013811 B = 0.003433 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.934977 B = 8153.559413 C = 9684.599892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 O -0.286 6.286 4 C 0.205 3.795 5 C -0.150 4.150 6 C -0.056 4.056 7 C 0.605 3.395 8 O -0.540 6.540 9 N -0.685 5.685 10 C 0.137 3.863 11 H 0.102 0.898 12 C -0.135 4.135 13 C 0.138 3.862 14 H 0.114 0.886 15 C -0.131 4.131 16 C -0.117 4.117 17 C 0.126 3.874 18 H 0.106 0.894 19 N -0.611 5.611 20 C -0.212 4.212 21 H 0.086 0.914 22 C -0.066 4.066 23 N -0.947 5.947 24 Si 0.969 3.031 25 H -0.293 1.293 26 H -0.302 1.302 27 H -0.271 1.271 28 O 0.111 5.889 29 N -0.402 5.402 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.103 0.897 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.208 0.792 36 H 0.411 0.589 37 H 0.034 0.966 38 H 0.074 0.926 39 H 0.036 0.964 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.059 0.941 43 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.175 1.634 9.053 18.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.027 4.027 3 O -0.193 6.193 4 C 0.008 3.992 5 C -0.173 4.173 6 C -0.122 4.122 7 C 0.389 3.611 8 O -0.419 6.419 9 N -0.333 5.333 10 C 0.032 3.968 11 H 0.120 0.880 12 C -0.175 4.175 13 C 0.031 3.969 14 H 0.131 0.869 15 C -0.171 4.171 16 C -0.157 4.157 17 C 0.019 3.981 18 H 0.124 0.876 19 N -0.332 5.332 20 C -0.340 4.340 21 H 0.103 0.897 22 C -0.259 4.259 23 N -0.597 5.597 24 Si 0.800 3.200 25 H -0.221 1.221 26 H -0.229 1.229 27 H -0.196 1.196 28 O 0.046 5.954 29 N -0.128 5.128 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.122 0.878 33 H 0.082 0.918 34 H 0.086 0.914 35 H 0.225 0.775 36 H 0.247 0.753 37 H 0.053 0.947 38 H 0.092 0.908 39 H 0.055 0.945 40 H 0.092 0.908 41 H 0.105 0.895 42 H 0.078 0.922 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -16.451 1.103 8.887 18.731 hybrid contribution 0.328 -0.954 -0.801 1.288 sum -16.124 0.150 8.086 18.038 Atomic orbital electron populations 1.21820 0.89776 1.04698 1.03882 1.23131 0.97727 0.79334 1.02476 1.86230 1.12030 1.31979 1.89091 1.21985 0.86410 0.90432 1.00369 1.22414 0.89512 0.99926 1.05453 1.24026 0.96697 0.84209 1.07315 1.16533 0.81359 0.85870 0.77380 1.90833 1.85268 1.13614 1.52144 1.45951 1.04609 1.11777 1.70930 1.22698 0.84296 0.92685 0.97150 0.88041 1.23358 0.98917 0.99623 0.95623 1.23607 0.91803 0.83857 0.97587 0.86859 1.22951 0.98944 0.98872 0.96302 1.22823 0.98457 0.98116 0.96305 1.23411 0.91526 0.93249 0.89915 0.87591 1.46743 1.75421 1.02756 1.08330 1.19345 1.35140 0.83596 0.95968 0.89657 1.25368 1.03421 1.00632 0.96459 1.69707 1.54248 1.32042 1.03697 0.85195 0.76774 0.80668 0.77400 1.22061 1.22876 1.19573 1.84980 1.22898 1.18780 1.68733 1.73998 0.90625 1.22683 1.25479 0.90973 0.91224 0.87809 0.91798 0.91396 0.77474 0.75282 0.94697 0.90768 0.94502 0.90785 0.89477 0.92195 0.94612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 10.28 71.98 0.74 -0.82 16 2 C 0.05 0.82 6.38 71.98 0.46 1.28 16 3 O -0.29 -6.52 10.21 -90.57 -0.92 -7.45 16 4 C 0.21 5.33 8.00 85.78 0.69 6.02 16 5 C -0.15 -3.76 10.97 22.80 0.25 -3.51 16 6 C -0.06 -1.59 7.29 24.36 0.18 -1.41 16 7 C 0.61 18.87 7.82 86.70 0.68 19.55 16 8 O -0.54 -18.87 16.63 -3.98 -0.07 -18.93 16 9 N -0.68 -21.72 5.09 -438.06 -2.23 -23.95 16 10 C 0.14 4.52 2.73 46.61 0.13 4.65 16 11 H 0.10 3.07 7.36 -2.39 -0.02 3.05 16 12 C -0.13 -5.15 6.22 32.21 0.20 -4.95 16 13 C 0.14 6.07 4.72 46.22 0.22 6.29 16 14 H 0.11 6.01 5.52 -2.39 -0.01 5.99 16 15 C -0.13 -4.78 6.44 32.21 0.21 -4.57 16 16 C -0.12 -3.67 6.44 32.21 0.21 -3.46 16 17 C 0.13 4.36 5.04 46.23 0.23 4.60 16 18 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 19 N -0.61 -27.65 2.99 -615.24 -1.84 -29.49 16 20 C -0.21 -10.80 10.59 84.03 0.89 -9.91 16 21 H 0.09 4.14 7.83 -2.91 -0.02 4.11 16 22 C -0.07 -3.56 5.50 84.86 0.47 -3.10 16 23 N -0.95 -54.11 10.46 21.65 0.23 -53.88 16 24 Si 0.97 44.44 29.55 68.60 2.03 46.47 16 25 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 26 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 27 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 28 O 0.11 3.23 11.03 65.64 0.72 3.96 16 29 N -0.40 -11.47 11.50 -172.02 -1.98 -13.45 16 30 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.21 4.23 8.06 -2.91 -0.02 4.21 16 36 H 0.41 13.05 8.45 -92.71 -0.78 12.27 16 37 H 0.03 1.49 7.98 -2.39 -0.02 1.47 16 38 H 0.07 2.54 7.82 -2.39 -0.02 2.53 16 39 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.07 2.30 7.82 -2.39 -0.02 2.28 16 41 H 0.09 2.17 7.82 -2.39 -0.02 2.15 16 42 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.24 13.83 8.31 -92.70 -0.77 13.06 16 Total: -1.00 -63.02 359.29 1.74 -61.28 By element: Atomic # 1 Polarization: 24.54 SS G_CDS: 0.26 Total: 24.80 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: 5.54 Total: 10.66 kcal Atomic # 7 Polarization: -114.96 SS G_CDS: -5.82 Total: -120.78 kcal Atomic # 8 Polarization: -22.16 SS G_CDS: -0.27 Total: -22.42 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -63.02 1.74 -61.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097555429.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.466 kcal (2) G-P(sol) polarization free energy of solvation -63.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds