Wall clock time and date at job start Tue Mar 31 2020 13:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00422 * 2 1 4 4 C 1.50707 * 109.47296 * 179.97438 * 3 2 1 5 5 N 1.30009 * 127.33226 * 270.00029 * 4 3 2 6 6 O 1.20658 * 112.30139 * 180.02562 * 5 4 3 7 7 C 1.33490 * 113.15346 * 359.74754 * 6 5 4 8 8 C 1.37357 * 106.34625 * 0.39493 * 7 6 5 9 9 C 1.47397 * 128.56965 * 179.91051 * 8 7 6 10 10 O 1.21611 * 120.00013 * 179.67926 * 9 8 7 11 11 N 1.34772 * 119.99729 * 359.67411 * 9 8 7 12 12 C 1.46509 * 119.99806 * 180.02562 * 11 9 8 13 13 H 1.08994 * 110.55945 * 32.09566 * 12 11 9 14 14 C 1.54859 * 110.62304 * 269.02336 * 12 11 9 15 15 C 1.56302 * 103.40555 * 241.38419 * 14 12 11 16 16 H 1.08994 * 115.71242 * 158.93233 * 15 14 12 17 17 C 1.55842 * 105.08112 * 288.42911 * 15 14 12 18 18 C 1.54222 * 103.56715 * 71.68814 * 17 15 14 19 19 C 1.55847 * 103.56566 * 0.02562 * 18 17 15 20 20 H 1.09000 * 116.12958 * 159.06175 * 19 18 17 21 21 N 1.50241 * 100.83721 * 33.12692 * 15 14 12 22 22 C 1.36936 * 130.84167 * 126.10942 * 21 15 14 23 23 H 1.08009 * 119.99395 * 350.20513 * 22 21 15 24 24 C 1.38806 * 120.00351 * 170.20353 * 22 21 15 25 25 N 1.31621 * 119.99872 * 157.21994 * 24 22 21 26 26 Si 1.86794 * 120.00296 * 337.49546 * 24 22 21 27 27 H 1.48502 * 109.47448 * 92.42425 * 26 24 22 28 28 H 1.48497 * 109.47453 * 212.43081 * 26 24 22 29 29 H 1.48506 * 109.47195 * 332.42969 * 26 24 22 30 30 H 1.09001 * 109.46887 * 300.00447 * 1 2 3 31 31 H 1.09003 * 109.46696 * 59.99731 * 1 2 3 32 32 H 1.08999 * 109.47268 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46871 * 59.99573 * 3 2 1 34 34 H 1.08999 * 109.46604 * 299.99685 * 3 2 1 35 35 H 1.07997 * 126.82995 * 180.30637 * 7 6 5 36 36 H 0.97000 * 120.00250 * 359.97438 * 11 9 8 37 37 H 1.09001 * 110.62512 * 0.02562 * 14 12 11 38 38 H 1.09000 * 110.62385 * 123.01771 * 14 12 11 39 39 H 1.08996 * 110.62498 * 190.09298 * 17 15 14 40 40 H 1.08996 * 110.62682 * 313.10967 * 17 15 14 41 41 H 1.08997 * 110.64455 * 241.43553 * 18 17 15 42 42 H 1.09000 * 110.49473 * 118.49109 * 18 17 15 43 43 H 0.96999 * 119.99836 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 7 4.2982 1.1242 1.0347 6 8 5.4600 1.0326 0.7223 7 6 5.6482 1.0125 -0.5991 8 6 4.4025 1.1161 -1.1686 9 6 4.0451 1.1436 -2.5983 10 8 2.8792 1.2350 -2.9320 11 7 5.0104 1.0676 -3.5358 12 6 4.6552 1.0956 -4.9569 13 1 3.7689 1.7092 -5.1179 14 6 4.4331 -0.3406 -5.4919 15 6 5.5241 -0.4866 -6.6017 16 1 5.7938 -1.5085 -6.8680 17 6 5.0374 0.4218 -7.7707 18 6 5.2576 1.8508 -7.2342 19 6 5.8493 1.6199 -5.8111 20 1 6.4050 2.4533 -5.3813 21 7 6.6281 0.3533 -6.0247 22 6 7.9418 0.0576 -5.7760 23 1 8.2901 -0.9618 -5.8550 24 6 8.8258 1.0677 -5.4225 25 7 9.9273 0.7773 -4.7632 26 14 8.4485 2.8401 -5.8758 27 1 7.7234 3.4937 -4.7567 28 1 9.7179 3.5660 -6.1343 29 1 7.6039 2.8697 -7.0970 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6886 1.8463 0.8900 34 1 1.6887 1.8462 -0.8900 35 1 6.5922 0.9323 -1.1175 36 1 5.9403 0.9952 -3.2696 37 1 4.5868 -1.0735 -4.6998 38 1 3.4359 -0.4408 -5.9204 39 1 5.6384 0.2527 -8.6641 40 1 3.9816 0.2477 -7.9783 41 1 4.3116 2.3889 -7.1745 42 1 5.9676 2.3890 -7.8622 43 1 10.5449 1.4832 -4.5159 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098201690.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:31 Heat of formation + Delta-G solvation = 42.345110 kcal Electronic energy + Delta-G solvation = -28018.179126 eV Core-core repulsion = 24069.099233 eV Total energy + Delta-G solvation = -3949.079893 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.99411 -40.10157 -38.64235 -37.95818 -34.04475 -34.02874 -32.71910 -32.04809 -29.78667 -29.33287 -28.66340 -28.13670 -25.90851 -24.70968 -24.03636 -21.74235 -21.36956 -20.34501 -20.10618 -19.05172 -18.26942 -17.83765 -17.14811 -16.86338 -16.40714 -16.31195 -15.88167 -15.45380 -15.01106 -14.65453 -14.31817 -14.15510 -13.62314 -13.53264 -13.25210 -12.81597 -12.62639 -12.47565 -12.36222 -11.73167 -11.65040 -11.52976 -11.52024 -11.21851 -11.12870 -10.94761 -10.47031 -10.34151 -10.25832 -10.13055 -9.87857 -9.79193 -9.76613 -9.55858 -9.39029 -9.00628 -8.66983 -7.36915 -6.05092 -3.30648 1.07227 1.55808 2.88626 3.16781 3.26659 3.36918 3.38847 3.41659 3.65348 4.05081 4.33988 4.40217 4.54865 4.80706 4.95155 5.02031 5.12661 5.16091 5.22532 5.26133 5.29594 5.31410 5.50967 5.53447 5.54845 5.62389 5.69446 5.73521 5.84000 5.86172 5.97820 6.12675 6.16946 6.36820 6.42438 6.59684 6.66748 6.79095 6.90895 6.93128 7.25530 7.77395 8.07742 8.18719 8.38692 8.60203 9.51880 10.12414 11.10762 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014739 B = 0.004356 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.306902 B = 6426.088718 C = 7627.594999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.382 6.382 3 C 0.145 3.855 4 C 0.062 3.938 5 N -0.343 5.343 6 O 0.104 5.896 7 C 0.000 4.000 8 C -0.238 4.238 9 C 0.593 3.407 10 O -0.539 6.539 11 N -0.699 5.699 12 C 0.133 3.867 13 H 0.089 0.911 14 C -0.137 4.137 15 C 0.140 3.860 16 H 0.097 0.903 17 C -0.132 4.132 18 C -0.135 4.135 19 C 0.114 3.886 20 H 0.097 0.903 21 N -0.605 5.605 22 C -0.225 4.225 23 H 0.099 0.901 24 C 0.017 3.983 25 N -0.909 5.909 26 Si 0.864 3.136 27 H -0.290 1.290 28 H -0.303 1.303 29 H -0.260 1.260 30 H 0.041 0.959 31 H 0.047 0.953 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.233 0.767 36 H 0.407 0.593 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.978 1.478 5.082 14.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.300 6.300 3 C 0.068 3.932 4 C -0.101 4.101 5 N -0.049 5.049 6 O 0.041 5.959 7 C -0.082 4.082 8 C -0.245 4.245 9 C 0.378 3.622 10 O -0.417 6.417 11 N -0.349 5.349 12 C 0.027 3.973 13 H 0.107 0.893 14 C -0.177 4.177 15 C 0.033 3.967 16 H 0.115 0.885 17 C -0.172 4.172 18 C -0.175 4.175 19 C 0.006 3.994 20 H 0.114 0.886 21 N -0.328 5.328 22 C -0.351 4.351 23 H 0.116 0.884 24 C -0.181 4.181 25 N -0.554 5.554 26 Si 0.696 3.304 27 H -0.219 1.219 28 H -0.232 1.232 29 H -0.185 1.185 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.106 0.894 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.249 0.751 36 H 0.242 0.758 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.513 1.375 6.242 15.858 hybrid contribution 0.356 1.300 -0.995 1.675 sum -14.157 2.675 5.247 15.333 Atomic orbital electron populations 1.22754 0.80248 1.03019 1.00169 1.87921 1.20150 1.26401 1.95496 1.20538 0.84273 0.86064 1.02368 1.24313 0.97295 1.01619 0.86890 1.73644 0.89628 1.17932 1.23648 1.84581 1.21453 1.66383 1.23444 1.26649 1.00810 0.97204 0.83514 1.22411 0.92645 1.13603 0.95886 1.16801 0.85627 0.76836 0.82916 1.90741 1.18376 1.50731 1.81892 1.45872 1.09898 1.72724 1.06396 1.22579 0.98536 0.97572 0.78621 0.89347 1.23439 0.98598 0.96204 0.99478 1.23080 0.87390 0.95046 0.91204 0.88477 1.22870 0.99525 0.95799 0.98989 1.22962 0.99869 0.97291 0.97347 1.23406 0.90677 0.91316 0.93952 0.88605 1.46950 1.06034 1.08159 1.71645 1.18676 0.81173 0.95120 1.40123 0.88373 1.24733 0.96143 0.97097 1.00090 1.69832 1.13371 1.32762 1.39399 0.87235 0.76322 0.86994 0.79860 1.21917 1.23179 1.18532 0.94076 0.93452 0.89375 0.91578 0.89329 0.75057 0.75764 0.91498 0.91666 0.92106 0.92277 0.92194 0.91256 0.92715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.45 16 2 O -0.38 -5.45 10.69 -35.23 -0.38 -5.83 16 3 C 0.14 1.93 6.19 36.01 0.22 2.16 16 4 C 0.06 0.93 7.21 -79.77 -0.58 0.35 16 5 N -0.34 -5.09 12.01 34.78 0.42 -4.67 16 6 O 0.10 1.39 11.06 18.66 0.21 1.60 16 7 C 0.00 0.00 11.85 30.41 0.36 0.36 16 8 C -0.24 -3.58 6.47 -102.89 -0.67 -4.24 16 9 C 0.59 9.95 7.81 -12.53 -0.10 9.85 16 10 O -0.54 -10.12 15.34 5.27 0.08 -10.04 16 11 N -0.70 -11.71 5.07 -52.44 -0.27 -11.98 16 12 C 0.13 2.28 2.81 -65.39 -0.18 2.10 16 13 H 0.09 1.49 7.23 -51.93 -0.38 1.12 16 14 C -0.14 -2.24 6.25 -23.98 -0.15 -2.39 16 15 C 0.14 2.44 5.50 -62.55 -0.34 2.10 16 16 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 17 C -0.13 -2.08 6.41 -24.57 -0.16 -2.23 16 18 C -0.14 -2.29 6.19 -24.57 -0.15 -2.44 16 19 C 0.11 2.18 3.18 -62.78 -0.20 1.98 16 20 H 0.10 2.00 3.57 -51.93 -0.19 1.82 16 21 N -0.61 -12.82 2.83 -145.53 -0.41 -13.23 16 22 C -0.22 -5.69 10.93 -15.06 -0.16 -5.86 16 23 H 0.10 2.68 8.06 -52.48 -0.42 2.26 16 24 C 0.02 0.45 5.49 -17.43 -0.10 0.36 16 25 N -0.91 -25.76 13.97 55.49 0.78 -24.99 16 26 Si 0.86 20.30 24.65 -169.99 -4.19 16.11 16 27 H -0.29 -6.61 6.68 56.52 0.38 -6.23 16 28 H -0.30 -7.51 7.11 56.52 0.40 -7.10 16 29 H -0.26 -5.85 4.88 56.52 0.28 -5.57 16 30 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 1.19 7.11 -51.93 -0.37 0.82 16 35 H 0.23 2.25 7.68 -52.49 -0.40 1.85 16 36 H 0.41 6.79 7.84 -40.82 -0.32 6.47 16 37 H 0.07 1.16 7.98 -51.93 -0.41 0.74 16 38 H 0.06 0.96 7.83 -51.93 -0.41 0.55 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.06 0.79 7.83 -51.93 -0.41 0.38 16 41 H 0.06 0.87 7.82 -51.93 -0.41 0.47 16 42 H 0.07 1.26 6.49 -51.93 -0.34 0.92 16 43 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 348.20 15.07 5.25 5.25 Total: -1.00 -31.13 348.20 -5.48 -36.61 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -5.87 Total: 7.61 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -1.09 Total: 3.55 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: 0.51 Total: -54.86 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -0.09 Total: -14.27 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -4.19 Total: 16.11 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.13 -5.48 -36.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098201690.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.953 kcal (2) G-P(sol) polarization free energy of solvation -31.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds