Wall clock time and date at job start Tue Mar 31 2020 13:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00422 * 2 1 4 4 C 1.50707 * 109.47296 * 179.97438 * 3 2 1 5 5 N 1.30009 * 127.33226 * 270.00029 * 4 3 2 6 6 O 1.20658 * 112.30139 * 180.02562 * 5 4 3 7 7 C 1.33490 * 113.15346 * 359.74754 * 6 5 4 8 8 C 1.37357 * 106.34625 * 0.39493 * 7 6 5 9 9 C 1.47397 * 128.56965 * 179.91051 * 8 7 6 10 10 O 1.21611 * 120.00013 * 179.67926 * 9 8 7 11 11 N 1.34772 * 119.99729 * 359.67411 * 9 8 7 12 12 C 1.46509 * 119.99806 * 180.02562 * 11 9 8 13 13 H 1.08994 * 110.55945 * 32.09566 * 12 11 9 14 14 C 1.54859 * 110.62304 * 269.02336 * 12 11 9 15 15 C 1.56302 * 103.40555 * 241.38419 * 14 12 11 16 16 H 1.08994 * 115.71242 * 158.93233 * 15 14 12 17 17 C 1.55842 * 105.08112 * 288.42911 * 15 14 12 18 18 C 1.54222 * 103.56715 * 71.68814 * 17 15 14 19 19 C 1.55847 * 103.56566 * 0.02562 * 18 17 15 20 20 H 1.09000 * 116.12958 * 159.06175 * 19 18 17 21 21 N 1.50241 * 100.83721 * 33.12692 * 15 14 12 22 22 C 1.36936 * 130.84167 * 126.10942 * 21 15 14 23 23 H 1.08009 * 119.99395 * 350.20513 * 22 21 15 24 24 C 1.38806 * 120.00351 * 170.20353 * 22 21 15 25 25 N 1.31621 * 119.99872 * 157.21994 * 24 22 21 26 26 Si 1.86794 * 120.00296 * 337.49546 * 24 22 21 27 27 H 1.48502 * 109.47448 * 92.42425 * 26 24 22 28 28 H 1.48497 * 109.47453 * 212.43081 * 26 24 22 29 29 H 1.48506 * 109.47195 * 332.42969 * 26 24 22 30 30 H 1.09001 * 109.46887 * 300.00447 * 1 2 3 31 31 H 1.09003 * 109.46696 * 59.99731 * 1 2 3 32 32 H 1.08999 * 109.47268 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46871 * 59.99573 * 3 2 1 34 34 H 1.08999 * 109.46604 * 299.99685 * 3 2 1 35 35 H 1.07997 * 126.82995 * 180.30637 * 7 6 5 36 36 H 0.97000 * 120.00250 * 359.97438 * 11 9 8 37 37 H 1.09001 * 110.62512 * 0.02562 * 14 12 11 38 38 H 1.09000 * 110.62385 * 123.01771 * 14 12 11 39 39 H 1.08996 * 110.62498 * 190.09298 * 17 15 14 40 40 H 1.08996 * 110.62682 * 313.10967 * 17 15 14 41 41 H 1.08997 * 110.64455 * 241.43553 * 18 17 15 42 42 H 1.09000 * 110.49473 * 118.49109 * 18 17 15 43 43 H 0.96999 * 119.99836 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 7 4.2982 1.1242 1.0347 6 8 5.4600 1.0326 0.7223 7 6 5.6482 1.0125 -0.5991 8 6 4.4025 1.1161 -1.1686 9 6 4.0451 1.1436 -2.5983 10 8 2.8792 1.2350 -2.9320 11 7 5.0104 1.0676 -3.5358 12 6 4.6552 1.0956 -4.9569 13 1 3.7689 1.7092 -5.1179 14 6 4.4331 -0.3406 -5.4919 15 6 5.5241 -0.4866 -6.6017 16 1 5.7938 -1.5085 -6.8680 17 6 5.0374 0.4218 -7.7707 18 6 5.2576 1.8508 -7.2342 19 6 5.8493 1.6199 -5.8111 20 1 6.4050 2.4533 -5.3813 21 7 6.6281 0.3533 -6.0247 22 6 7.9418 0.0576 -5.7760 23 1 8.2901 -0.9618 -5.8550 24 6 8.8258 1.0677 -5.4225 25 7 9.9273 0.7773 -4.7632 26 14 8.4485 2.8401 -5.8758 27 1 7.7234 3.4937 -4.7567 28 1 9.7179 3.5660 -6.1343 29 1 7.6039 2.8697 -7.0970 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6886 1.8463 0.8900 34 1 1.6887 1.8462 -0.8900 35 1 6.5922 0.9323 -1.1175 36 1 5.9403 0.9952 -3.2696 37 1 4.5868 -1.0735 -4.6998 38 1 3.4359 -0.4408 -5.9204 39 1 5.6384 0.2527 -8.6641 40 1 3.9816 0.2477 -7.9783 41 1 4.3116 2.3889 -7.1745 42 1 5.9676 2.3890 -7.8622 43 1 10.5449 1.4832 -4.5159 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098201690.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:30 Heat of formation + Delta-G solvation = 20.163140 kcal Electronic energy + Delta-G solvation = -28019.141008 eV Core-core repulsion = 24069.099233 eV Total energy + Delta-G solvation = -3950.041776 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.10531 -41.49803 -39.98772 -38.94520 -35.41848 -35.13113 -34.59078 -33.19840 -31.50413 -30.71039 -29.88108 -29.22900 -26.80408 -26.08277 -25.62414 -23.01186 -22.46436 -21.94102 -21.37356 -20.45594 -19.49700 -18.94145 -18.86885 -18.08823 -17.72620 -17.35218 -16.97907 -16.73124 -16.30903 -15.90767 -15.65216 -15.48685 -15.23785 -15.04473 -14.56373 -14.32500 -13.90150 -13.58743 -13.41166 -13.25585 -12.99533 -12.84458 -12.78972 -12.59734 -12.54814 -12.37894 -11.96580 -11.82743 -11.57717 -11.37176 -11.32722 -11.18240 -10.93203 -10.90860 -10.84900 -10.74034 -10.06784 -9.17570 -8.07349 -5.27603 -0.03448 0.44642 1.28996 1.46314 1.51789 1.77929 2.04559 2.19377 2.46437 2.62353 2.97080 2.99745 3.21162 3.33833 3.70664 3.75606 3.85792 3.88945 4.05951 4.10431 4.24251 4.28288 4.34359 4.46876 4.49074 4.51214 4.53085 4.57863 4.64343 4.66323 4.74003 4.80758 4.82411 5.10265 5.13945 5.24892 5.35497 5.42940 5.58321 5.64226 6.02848 6.18178 6.44527 6.67430 6.98661 7.07637 7.54670 8.27787 9.12110 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.014739 B = 0.004356 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.306902 B = 6426.088718 C = 7627.594999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.411 6.411 3 C 0.145 3.855 4 C 0.053 3.947 5 N -0.355 5.355 6 O 0.107 5.893 7 C 0.026 3.974 8 C -0.265 4.265 9 C 0.597 3.403 10 O -0.560 6.560 11 N -0.701 5.701 12 C 0.138 3.862 13 H 0.099 0.901 14 C -0.126 4.126 15 C 0.134 3.866 16 H 0.099 0.901 17 C -0.122 4.122 18 C -0.133 4.133 19 C 0.105 3.895 20 H 0.079 0.921 21 N -0.624 5.624 22 C -0.202 4.202 23 H 0.067 0.933 24 C -0.034 4.034 25 N -0.957 5.957 26 Si 0.918 3.082 27 H -0.280 1.280 28 H -0.325 1.325 29 H -0.244 1.244 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.259 0.741 36 H 0.406 0.594 37 H 0.053 0.947 38 H 0.091 0.909 39 H 0.057 0.943 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.056 0.944 43 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.349 2.032 4.585 17.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.330 6.330 3 C 0.068 3.932 4 C -0.110 4.110 5 N -0.061 5.061 6 O 0.045 5.955 7 C -0.056 4.056 8 C -0.273 4.273 9 C 0.384 3.616 10 O -0.440 6.440 11 N -0.350 5.350 12 C 0.032 3.968 13 H 0.117 0.883 14 C -0.167 4.167 15 C 0.028 3.972 16 H 0.117 0.883 17 C -0.161 4.161 18 C -0.173 4.173 19 C -0.001 4.001 20 H 0.097 0.903 21 N -0.348 5.348 22 C -0.330 4.330 23 H 0.085 0.915 24 C -0.228 4.228 25 N -0.605 5.605 26 Si 0.750 3.250 27 H -0.208 1.208 28 H -0.255 1.255 29 H -0.168 1.168 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.118 0.882 33 H 0.105 0.895 34 H 0.102 0.898 35 H 0.274 0.726 36 H 0.241 0.759 37 H 0.072 0.928 38 H 0.109 0.891 39 H 0.076 0.924 40 H 0.112 0.888 41 H 0.109 0.891 42 H 0.074 0.926 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -16.955 1.929 5.727 18.000 hybrid contribution 1.039 1.014 -0.824 1.670 sum -15.916 2.943 4.903 16.912 Atomic orbital electron populations 1.22979 0.78213 1.04241 1.01312 1.87870 1.22476 1.26933 1.95712 1.20602 0.83441 0.86056 1.03109 1.24673 0.98269 1.01266 0.86827 1.73639 0.89980 1.18627 1.23865 1.84574 1.21068 1.66064 1.23745 1.27079 1.01013 0.94500 0.83026 1.22342 0.93756 1.15958 0.95234 1.16902 0.85186 0.76054 0.83426 1.90719 1.19123 1.51852 1.82354 1.45885 1.09864 1.72782 1.06460 1.22543 0.97772 0.97994 0.78497 0.88305 1.23364 0.99376 0.95261 0.98650 1.23326 0.86272 0.95214 0.92373 0.88305 1.22820 1.01526 0.94149 0.97648 1.22971 1.00820 0.98271 0.95194 1.23531 0.90828 0.89906 0.95834 0.90321 1.46994 1.05228 1.10097 1.72450 1.18522 0.83121 0.93656 1.37706 0.91535 1.25188 0.96377 1.00255 1.01008 1.69952 1.14983 1.33559 1.41967 0.86355 0.75260 0.82865 0.80485 1.20834 1.25486 1.16811 0.92072 0.93134 0.88190 0.89519 0.89801 0.72553 0.75894 0.92787 0.89099 0.92378 0.88820 0.89126 0.92550 0.93256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.76 16 2 O -0.41 -11.31 10.69 -148.98 -1.59 -12.90 16 3 C 0.14 3.72 6.19 71.24 0.44 4.16 16 4 C 0.05 1.53 7.21 45.16 0.33 1.86 16 5 N -0.35 -10.17 12.01 -44.78 -0.54 -10.71 16 6 O 0.11 2.74 11.06 77.02 0.85 3.59 16 7 C 0.03 0.61 11.85 67.61 0.80 1.41 16 8 C -0.27 -7.70 6.47 -18.75 -0.12 -7.82 16 9 C 0.60 19.28 7.81 86.66 0.68 19.96 16 10 O -0.56 -20.23 15.34 -4.07 -0.06 -20.29 16 11 N -0.70 -22.39 5.07 -438.08 -2.22 -24.62 16 12 C 0.14 4.38 2.81 46.63 0.13 4.51 16 13 H 0.10 2.99 7.23 -2.39 -0.02 2.97 16 14 C -0.13 -3.78 6.25 32.38 0.20 -3.58 16 15 C 0.13 4.36 5.50 46.39 0.26 4.61 16 16 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 17 C -0.12 -3.37 6.41 31.99 0.21 -3.17 16 18 C -0.13 -4.03 6.19 31.99 0.20 -3.83 16 19 C 0.11 3.79 3.18 46.25 0.15 3.94 16 20 H 0.08 3.13 3.57 -2.39 -0.01 3.12 16 21 N -0.62 -25.67 2.83 -614.34 -1.74 -27.41 16 22 C -0.20 -10.32 10.93 84.03 0.92 -9.40 16 23 H 0.07 3.75 8.06 -2.91 -0.02 3.73 16 24 C -0.03 -1.84 5.49 84.86 0.47 -1.37 16 25 N -0.96 -55.71 13.97 21.65 0.30 -55.41 16 26 Si 0.92 42.22 24.65 68.60 1.69 43.92 16 27 H -0.28 -12.23 6.68 99.48 0.66 -11.56 16 28 H -0.32 -15.96 7.11 99.48 0.71 -15.25 16 29 H -0.24 -10.40 4.88 99.48 0.48 -9.92 16 30 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.10 1.51 8.14 -2.39 -0.02 1.50 16 33 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.08 2.19 7.11 -2.39 -0.02 2.17 16 35 H 0.26 4.56 7.68 -2.91 -0.02 4.53 16 36 H 0.41 13.12 7.84 -92.71 -0.73 12.39 16 37 H 0.05 1.76 7.98 -2.39 -0.02 1.74 16 38 H 0.09 2.29 7.83 -2.39 -0.02 2.27 16 39 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.09 1.99 7.83 -2.39 -0.02 1.97 16 41 H 0.09 2.21 7.82 -2.39 -0.02 2.19 16 42 H 0.06 1.86 6.49 -2.39 -0.02 1.84 16 43 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 Total: -1.00 -67.77 348.20 2.65 -65.12 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: 0.06 Total: 25.68 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: 5.90 Total: 13.03 kcal Atomic # 7 Polarization: -113.95 SS G_CDS: -4.20 Total: -118.14 kcal Atomic # 8 Polarization: -28.80 SS G_CDS: -0.80 Total: -29.60 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 1.69 Total: 43.92 kcal Total: -67.77 2.65 -65.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098201690.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.281 kcal (2) G-P(sol) polarization free energy of solvation -67.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds