Wall clock time and date at job start Tue Mar 31 2020 13:22:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 O 1.20925 * 124.56453 * 2 1 4 4 C 1.34173 * 112.18924 * 179.75859 * 3 2 1 5 5 C 1.48202 * 126.38290 * 180.28028 * 4 3 2 6 6 O 1.21497 * 119.99938 * 180.12550 * 5 4 3 7 7 N 1.34776 * 120.00443 * 0.12613 * 5 4 3 8 8 C 1.46498 * 120.00598 * 180.02562 * 7 5 4 9 9 C 1.54185 * 111.61006 * 298.58434 * 8 7 5 10 10 C 1.56222 * 103.64982 * 260.32261 * 9 8 7 11 11 C 1.54853 * 103.17721 * 322.66271 * 10 9 8 12 12 C 1.54185 * 104.29778 * 37.76538 * 11 10 9 13 13 H 1.08996 * 112.25241 * 98.79030 * 12 11 10 14 14 C 1.53799 * 109.12442 * 223.08533 * 12 11 10 15 15 N 1.47221 * 106.35906 * 132.67263 * 14 12 11 16 16 C 1.36937 * 126.70400 * 148.74364 * 15 14 12 17 17 H 1.08001 * 119.99782 * 342.11943 * 16 15 14 18 18 C 1.38811 * 120.00119 * 162.11653 * 16 15 14 19 19 N 1.31617 * 119.99821 * 159.78195 * 18 16 15 20 20 Si 1.86798 * 120.00039 * 339.78491 * 18 16 15 21 21 H 1.48500 * 109.47030 * 84.68715 * 20 18 16 22 22 H 1.48499 * 109.47236 * 204.68326 * 20 18 16 23 23 H 1.48501 * 109.47349 * 324.68597 * 20 18 16 24 24 C 1.47227 * 106.59764 * 328.76632 * 15 14 12 25 25 C 1.36311 * 107.23138 * 0.38780 * 4 3 2 26 26 C 1.34825 * 124.57049 * 179.97438 * 2 1 3 27 27 O 1.21984 * 127.14713 * 0.02562 * 26 2 1 28 28 H 1.09000 * 109.47144 * 270.00083 * 1 2 3 29 29 H 1.09003 * 109.47236 * 29.99899 * 1 2 3 30 30 H 1.08995 * 109.47198 * 150.00214 * 1 2 3 31 31 H 0.97003 * 119.99863 * 359.97438 * 7 5 4 32 32 H 1.09001 * 110.46811 * 20.29984 * 9 8 7 33 33 H 1.09007 * 110.46373 * 142.88566 * 9 8 7 34 34 H 1.08997 * 110.86757 * 204.05315 * 10 9 8 35 35 H 1.09005 * 110.22788 * 80.96860 * 10 9 8 36 36 H 1.08991 * 110.46707 * 279.05965 * 11 10 9 37 37 H 1.08999 * 110.57662 * 156.52166 * 11 10 9 38 38 H 1.08997 * 110.07865 * 13.44512 * 14 12 11 39 39 H 1.09007 * 110.12619 * 251.91924 * 14 12 11 40 40 H 0.97000 * 119.99838 * 180.02562 * 19 18 16 41 41 H 1.09001 * 110.07183 * 272.01342 * 24 15 14 42 42 H 1.08989 * 110.12666 * 150.48606 * 24 15 14 43 43 H 1.07994 * 127.99942 * 179.90353 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1510 0.9958 0.0000 4 6 3.4616 0.7083 0.0052 5 6 4.5759 1.6853 0.0126 6 8 5.7264 1.2946 0.0146 7 7 4.3133 3.0072 0.0171 8 6 5.4148 3.9730 0.0239 9 6 6.2906 3.8267 1.2844 10 6 5.7808 4.9675 2.2220 11 6 5.4852 6.1268 1.2389 12 6 4.8977 5.4307 -0.0051 13 1 3.8087 5.4717 -0.0253 14 6 5.5120 6.0552 -1.2693 15 7 5.9269 4.9327 -2.1267 16 6 5.9582 4.9164 -3.4956 17 1 5.4022 5.6526 -4.0572 18 6 6.7045 3.9539 -4.1614 19 7 6.4417 3.6717 -5.4199 20 14 8.0816 3.0590 -3.2714 21 1 7.5195 1.9083 -2.5198 22 1 9.0730 2.5668 -4.2614 23 1 8.7471 3.9905 -2.3256 24 6 6.3011 3.8307 -1.2249 25 6 3.5770 -0.6500 0.0001 26 6 2.2300 -1.1102 0.0005 27 8 1.8474 -2.2685 0.0006 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 3.3948 3.3191 0.0152 32 1 6.1536 2.8421 1.7315 33 1 7.3400 3.9929 1.0407 34 1 6.5507 5.2548 2.9379 35 1 4.8714 4.6551 2.7355 36 1 6.4046 6.6529 0.9826 37 1 4.7590 6.8172 1.6679 38 1 6.3770 6.6630 -1.0039 39 1 4.7702 6.6654 -1.7847 40 1 6.9629 2.9988 -5.8850 41 1 7.3524 3.9136 -0.9491 42 1 6.1159 2.8714 -1.7080 43 1 4.4813 -1.2404 0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098812929.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:50 Heat of formation + Delta-G solvation = 48.796997 kcal Electronic energy + Delta-G solvation = -28460.666076 eV Core-core repulsion = 24511.865958 eV Total energy + Delta-G solvation = -3948.800119 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.21781 -40.63797 -38.54140 -38.25876 -34.80875 -34.49729 -33.81022 -32.34545 -31.81507 -30.01354 -28.76011 -27.76070 -25.42580 -24.75085 -23.79312 -23.35585 -21.53387 -20.51972 -19.94452 -19.37929 -18.63996 -18.52520 -17.39542 -16.87810 -16.44265 -15.66000 -15.40555 -15.05773 -14.95026 -14.75244 -14.35981 -14.14397 -13.89503 -13.76337 -13.59639 -13.32876 -13.14122 -13.11387 -12.92681 -12.11649 -11.95784 -11.63758 -11.45118 -11.17587 -11.04586 -10.88120 -10.58162 -10.48657 -10.23271 -10.21053 -10.17941 -10.10214 -9.99491 -9.44286 -9.03062 -8.73242 -8.67415 -7.12515 -5.96294 -3.29015 0.45719 1.42928 2.48452 2.65975 2.97823 3.28593 3.43320 3.50875 3.53118 4.37172 4.49338 4.54996 4.55601 4.60303 4.80115 4.86412 4.89229 4.94815 5.09662 5.11067 5.32173 5.40969 5.43284 5.53658 5.60155 5.67226 5.71409 5.72116 5.72918 5.87872 5.98601 6.07935 6.20793 6.30600 6.37449 6.46501 6.56459 6.66989 6.76560 7.24036 7.49206 7.62916 7.80407 7.94914 8.28333 8.77562 9.65419 10.14319 11.19234 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011723 B = 0.005012 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.865103 B = 5585.739122 C = 6730.562205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.454 5.454 3 O -0.004 6.004 4 C 0.040 3.960 5 C 0.599 3.401 6 O -0.487 6.487 7 N -0.686 5.686 8 C 0.159 3.841 9 C -0.123 4.123 10 C -0.123 4.123 11 C -0.115 4.115 12 C -0.102 4.102 13 H 0.085 0.915 14 C 0.136 3.864 15 N -0.605 5.605 16 C -0.244 4.244 17 H 0.094 0.906 18 C 0.024 3.976 19 N -0.909 5.909 20 Si 0.874 3.126 21 H -0.276 1.276 22 H -0.301 1.301 23 H -0.274 1.274 24 C 0.107 3.893 25 C -0.241 4.241 26 C 0.482 3.518 27 O -0.526 6.526 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.405 0.595 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.031 0.969 39 H 0.053 0.947 40 H 0.264 0.736 41 H 0.039 0.961 42 H 0.073 0.927 43 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.249 0.510 16.852 19.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.217 5.217 3 O -0.015 6.015 4 C -0.018 4.018 5 C 0.380 3.620 6 O -0.360 6.360 7 N -0.336 5.336 8 C 0.072 3.928 9 C -0.161 4.161 10 C -0.160 4.160 11 C -0.153 4.153 12 C -0.122 4.122 13 H 0.103 0.897 14 C 0.010 3.990 15 N -0.330 5.330 16 C -0.371 4.371 17 H 0.112 0.888 18 C -0.174 4.174 19 N -0.552 5.552 20 Si 0.704 3.296 21 H -0.202 1.202 22 H -0.229 1.229 23 H -0.200 1.200 24 C -0.019 4.019 25 C -0.266 4.266 26 C 0.281 3.719 27 O -0.407 6.407 28 H 0.098 0.902 29 H 0.113 0.887 30 H 0.123 0.877 31 H 0.240 0.760 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.048 0.952 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.057 0.943 42 H 0.091 0.909 43 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -9.877 -0.250 16.543 19.269 hybrid contribution 0.401 -0.483 0.210 0.661 sum -9.476 -0.732 16.753 19.261 Atomic orbital electron populations 1.22123 0.70727 1.05764 1.04287 1.46023 1.05847 0.99905 1.69956 1.83997 1.15312 1.21033 1.81198 1.23592 0.81464 0.96530 1.00223 1.16690 0.85475 0.81539 0.78320 1.90922 1.17958 1.78436 1.48722 1.45896 1.10709 1.04385 1.72628 1.21835 0.86740 0.87336 0.96862 1.22965 0.99601 0.99131 0.94444 1.22753 1.00649 0.95271 0.97376 1.22452 1.01089 0.97206 0.94526 1.22770 1.00155 0.92447 0.96875 0.89677 1.21537 0.96948 0.91077 0.89441 1.44871 1.78013 1.08148 1.01918 1.18624 1.25082 1.15742 0.77651 0.88818 1.24957 0.99026 0.98201 0.95252 1.69806 1.40909 1.33778 1.10741 0.87106 0.83729 0.80319 0.78465 1.20214 1.22936 1.19954 1.22204 0.95626 0.94425 0.89641 1.23320 0.99680 0.93417 1.10192 1.18332 0.86704 0.85500 0.81402 1.90957 1.79102 1.15868 1.54748 0.90180 0.88726 0.87705 0.75975 0.90587 0.90279 0.91487 0.91837 0.90718 0.91428 0.95159 0.92851 0.92645 0.94309 0.90931 0.78982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.74 11.22 59.85 0.67 1.41 16 2 N -0.45 -5.28 3.68 -69.77 -0.26 -5.54 16 3 O 0.00 -0.05 10.69 16.82 0.18 0.13 16 4 C 0.04 0.55 7.25 -36.18 -0.26 0.29 16 5 C 0.60 9.43 6.82 -12.17 -0.08 9.34 16 6 O -0.49 -9.24 14.39 5.37 0.08 -9.16 16 7 N -0.69 -9.80 5.23 -46.65 -0.24 -10.04 16 8 C 0.16 2.53 0.94 -129.89 -0.12 2.41 16 9 C -0.12 -1.72 5.75 -24.38 -0.14 -1.86 16 10 C -0.12 -1.31 6.92 -24.03 -0.17 -1.47 16 11 C -0.11 -1.26 6.38 -25.13 -0.16 -1.42 16 12 C -0.10 -1.41 3.67 -88.69 -0.33 -1.74 16 13 H 0.08 1.02 7.69 -51.93 -0.40 0.62 16 14 C 0.14 2.44 6.79 -3.23 -0.02 2.42 16 15 N -0.60 -14.10 3.21 -171.10 -0.55 -14.65 16 16 C -0.24 -6.82 10.67 -15.06 -0.16 -6.98 16 17 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 18 C 0.02 0.72 5.45 -17.43 -0.09 0.62 16 19 N -0.91 -28.19 13.97 55.49 0.78 -27.41 16 20 Si 0.87 23.20 24.36 -169.99 -4.14 19.06 16 21 H -0.28 -7.36 6.37 56.52 0.36 -7.00 16 22 H -0.30 -8.09 7.11 56.52 0.40 -7.69 16 23 H -0.27 -7.08 6.49 56.52 0.37 -6.71 16 24 C 0.11 2.33 3.51 -3.23 -0.01 2.32 16 25 C -0.24 -3.44 10.94 -38.70 -0.42 -3.86 16 26 C 0.48 7.08 8.02 -14.66 -0.12 6.97 16 27 O -0.53 -9.17 17.84 4.93 0.09 -9.08 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.10 0.70 8.03 -51.93 -0.42 0.29 16 31 H 0.40 4.61 8.09 -40.82 -0.33 4.28 16 32 H 0.08 1.09 6.69 -51.93 -0.35 0.74 16 33 H 0.08 1.19 7.18 -51.93 -0.37 0.81 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.86 7.17 -51.93 -0.37 0.49 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 38 H 0.03 0.54 7.12 -51.93 -0.37 0.17 16 39 H 0.05 0.93 8.14 -51.92 -0.42 0.51 16 40 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 41 H 0.04 0.89 5.15 -51.93 -0.27 0.63 16 42 H 0.07 1.80 4.37 -51.94 -0.23 1.58 16 43 H 0.19 2.57 8.06 -52.49 -0.42 2.14 16 LS Contribution 342.42 15.07 5.16 5.16 Total: -1.00 -35.82 342.42 -6.03 -41.84 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: -5.70 Total: 1.24 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: -1.42 Total: 8.44 kcal Atomic # 7 Polarization: -57.36 SS G_CDS: -0.27 Total: -57.64 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: 0.35 Total: -18.11 kcal Atomic # 14 Polarization: 23.20 SS G_CDS: -4.14 Total: 19.06 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.82 -6.03 -41.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098812929.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.638 kcal (2) G-P(sol) polarization free energy of solvation -35.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds