Wall clock time and date at job start Tue Mar 31 2020 13:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 O 1.20925 * 124.56453 * 2 1 4 4 C 1.34173 * 112.18924 * 179.75859 * 3 2 1 5 5 C 1.48202 * 126.38290 * 180.28028 * 4 3 2 6 6 O 1.21497 * 119.99938 * 180.12550 * 5 4 3 7 7 N 1.34776 * 120.00443 * 0.12613 * 5 4 3 8 8 C 1.46498 * 120.00598 * 180.02562 * 7 5 4 9 9 C 1.54185 * 111.61006 * 298.58434 * 8 7 5 10 10 C 1.56222 * 103.64982 * 260.32261 * 9 8 7 11 11 C 1.54853 * 103.17721 * 322.66271 * 10 9 8 12 12 C 1.54185 * 104.29778 * 37.76538 * 11 10 9 13 13 H 1.08996 * 112.25241 * 98.79030 * 12 11 10 14 14 C 1.53799 * 109.12442 * 223.08533 * 12 11 10 15 15 N 1.47221 * 106.35906 * 132.67263 * 14 12 11 16 16 C 1.36937 * 126.70400 * 148.74364 * 15 14 12 17 17 H 1.08001 * 119.99782 * 342.11943 * 16 15 14 18 18 C 1.38811 * 120.00119 * 162.11653 * 16 15 14 19 19 N 1.31617 * 119.99821 * 159.78195 * 18 16 15 20 20 Si 1.86798 * 120.00039 * 339.78491 * 18 16 15 21 21 H 1.48500 * 109.47030 * 84.68715 * 20 18 16 22 22 H 1.48499 * 109.47236 * 204.68326 * 20 18 16 23 23 H 1.48501 * 109.47349 * 324.68597 * 20 18 16 24 24 C 1.47227 * 106.59764 * 328.76632 * 15 14 12 25 25 C 1.36311 * 107.23138 * 0.38780 * 4 3 2 26 26 C 1.34825 * 124.57049 * 179.97438 * 2 1 3 27 27 O 1.21984 * 127.14713 * 0.02562 * 26 2 1 28 28 H 1.09000 * 109.47144 * 270.00083 * 1 2 3 29 29 H 1.09003 * 109.47236 * 29.99899 * 1 2 3 30 30 H 1.08995 * 109.47198 * 150.00214 * 1 2 3 31 31 H 0.97003 * 119.99863 * 359.97438 * 7 5 4 32 32 H 1.09001 * 110.46811 * 20.29984 * 9 8 7 33 33 H 1.09007 * 110.46373 * 142.88566 * 9 8 7 34 34 H 1.08997 * 110.86757 * 204.05315 * 10 9 8 35 35 H 1.09005 * 110.22788 * 80.96860 * 10 9 8 36 36 H 1.08991 * 110.46707 * 279.05965 * 11 10 9 37 37 H 1.08999 * 110.57662 * 156.52166 * 11 10 9 38 38 H 1.08997 * 110.07865 * 13.44512 * 14 12 11 39 39 H 1.09007 * 110.12619 * 251.91924 * 14 12 11 40 40 H 0.97000 * 119.99838 * 180.02562 * 19 18 16 41 41 H 1.09001 * 110.07183 * 272.01342 * 24 15 14 42 42 H 1.08989 * 110.12666 * 150.48606 * 24 15 14 43 43 H 1.07994 * 127.99942 * 179.90353 * 25 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 8 2.1510 0.9958 0.0000 4 6 3.4616 0.7083 0.0052 5 6 4.5759 1.6853 0.0126 6 8 5.7264 1.2946 0.0146 7 7 4.3133 3.0072 0.0171 8 6 5.4148 3.9730 0.0239 9 6 6.2906 3.8267 1.2844 10 6 5.7808 4.9675 2.2220 11 6 5.4852 6.1268 1.2389 12 6 4.8977 5.4307 -0.0051 13 1 3.8087 5.4717 -0.0253 14 6 5.5120 6.0552 -1.2693 15 7 5.9269 4.9327 -2.1267 16 6 5.9582 4.9164 -3.4956 17 1 5.4022 5.6526 -4.0572 18 6 6.7045 3.9539 -4.1614 19 7 6.4417 3.6717 -5.4199 20 14 8.0816 3.0590 -3.2714 21 1 7.5195 1.9083 -2.5198 22 1 9.0730 2.5668 -4.2614 23 1 8.7471 3.9905 -2.3256 24 6 6.3011 3.8307 -1.2249 25 6 3.5770 -0.6500 0.0001 26 6 2.2300 -1.1102 0.0005 27 8 1.8474 -2.2685 0.0006 28 1 -0.3633 0.0000 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 3.3948 3.3191 0.0152 32 1 6.1536 2.8421 1.7315 33 1 7.3400 3.9929 1.0407 34 1 6.5507 5.2548 2.9379 35 1 4.8714 4.6551 2.7355 36 1 6.4046 6.6529 0.9826 37 1 4.7590 6.8172 1.6679 38 1 6.3770 6.6630 -1.0039 39 1 4.7702 6.6654 -1.7847 40 1 6.9629 2.9988 -5.8850 41 1 7.3524 3.9136 -0.9491 42 1 6.1159 2.8714 -1.7080 43 1 4.4813 -1.2404 0.0006 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098812929.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:22:49 Heat of formation + Delta-G solvation = 21.505879 kcal Electronic energy + Delta-G solvation = -28461.849508 eV Core-core repulsion = 24511.865958 eV Total energy + Delta-G solvation = -3949.983550 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -46.28213 -41.92578 -39.85449 -39.41583 -36.45819 -35.52644 -34.94575 -33.83561 -33.45146 -31.29518 -30.11938 -28.83719 -26.75149 -26.30794 -25.00655 -24.51676 -22.87500 -21.90169 -21.08835 -20.66374 -19.70748 -19.55106 -18.92803 -18.41672 -17.83512 -16.94586 -16.75117 -16.44169 -16.18203 -16.01939 -15.72297 -15.61000 -15.08111 -14.89976 -14.85980 -14.74039 -14.52411 -14.22451 -13.73539 -13.68313 -13.37862 -13.19357 -13.01495 -12.72990 -12.46746 -12.06399 -11.99367 -11.86262 -11.68129 -11.57468 -11.41860 -11.36314 -11.29031 -11.15278 -10.96149 -10.27805 -9.73455 -9.12538 -8.23408 -5.48606 -0.68404 0.45794 1.26713 1.30820 1.31921 1.35945 1.50399 1.78349 2.15785 2.34495 2.98624 3.24622 3.27160 3.38907 3.60020 3.62851 3.79483 3.87437 4.19896 4.24076 4.32920 4.33576 4.39133 4.50091 4.54306 4.58691 4.62794 4.64245 4.76760 4.77638 4.82624 4.97209 5.01091 5.06166 5.22559 5.27633 5.30354 5.45714 5.53925 5.64289 6.05394 6.09259 6.38776 6.69227 6.75157 6.78514 7.48873 8.08508 8.96034 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011723 B = 0.005012 C = 0.004159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2387.865103 B = 5585.739122 C = 6730.562205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.442 5.442 3 O 0.019 5.981 4 C 0.043 3.957 5 C 0.600 3.400 6 O -0.524 6.524 7 N -0.674 5.674 8 C 0.163 3.837 9 C -0.124 4.124 10 C -0.109 4.109 11 C -0.108 4.108 12 C -0.089 4.089 13 H 0.115 0.885 14 C 0.128 3.872 15 N -0.624 5.624 16 C -0.221 4.221 17 H 0.074 0.926 18 C -0.031 4.031 19 N -0.954 5.954 20 Si 0.927 3.073 21 H -0.285 1.285 22 H -0.308 1.308 23 H -0.266 1.266 24 C 0.106 3.894 25 C -0.252 4.252 26 C 0.472 3.528 27 O -0.563 6.563 28 H 0.106 0.894 29 H 0.123 0.877 30 H 0.106 0.894 31 H 0.421 0.579 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.069 0.931 37 H 0.102 0.898 38 H 0.039 0.961 39 H 0.058 0.942 40 H 0.260 0.740 41 H 0.024 0.976 42 H 0.036 0.964 43 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.179 2.408 20.008 23.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.203 5.203 3 O 0.006 5.994 4 C -0.017 4.017 5 C 0.382 3.618 6 O -0.401 6.401 7 N -0.325 5.325 8 C 0.076 3.924 9 C -0.163 4.163 10 C -0.146 4.146 11 C -0.145 4.145 12 C -0.109 4.109 13 H 0.133 0.867 14 C 0.003 3.997 15 N -0.349 5.349 16 C -0.349 4.349 17 H 0.091 0.909 18 C -0.226 4.226 19 N -0.601 5.601 20 Si 0.757 3.243 21 H -0.213 1.213 22 H -0.237 1.237 23 H -0.191 1.191 24 C -0.021 4.021 25 C -0.277 4.277 26 C 0.271 3.729 27 O -0.447 6.447 28 H 0.124 0.876 29 H 0.141 0.859 30 H 0.124 0.876 31 H 0.260 0.740 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.056 0.944 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.041 0.959 42 H 0.054 0.946 43 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -11.875 1.716 19.762 23.119 hybrid contribution 0.902 -0.967 -0.770 1.530 sum -10.973 0.750 18.992 21.947 Atomic orbital electron populations 1.22645 0.67614 1.07256 1.06518 1.46381 1.07176 0.99024 1.67703 1.84017 1.14451 1.20766 1.80124 1.23121 0.81960 0.95724 1.00854 1.16817 0.85328 0.82055 0.77598 1.90907 1.19673 1.79137 1.50353 1.45777 1.11321 1.03687 1.71756 1.21764 0.86795 0.89055 0.94767 1.22956 0.98461 1.00619 0.94275 1.22724 1.01966 0.93174 0.96764 1.22458 1.01640 0.97524 0.92906 1.22798 1.01707 0.90326 0.96062 0.86742 1.21865 0.97522 0.89929 0.90377 1.45012 1.77982 1.10942 1.01014 1.18653 1.22585 1.13630 0.80060 0.90859 1.25443 1.01319 0.99961 0.95834 1.69901 1.42446 1.35531 1.12221 0.86261 0.81611 0.79218 0.77183 1.21252 1.23686 1.19092 1.22174 0.96252 0.92121 0.91506 1.23434 1.00051 0.93835 1.10386 1.18346 0.87046 0.85667 0.81883 1.90932 1.79639 1.17182 1.56967 0.87587 0.85905 0.87583 0.73988 0.91100 0.91896 0.89739 0.89735 0.91233 0.87975 0.94353 0.92344 0.93071 0.95877 0.94577 0.78995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.01 11.22 127.77 1.43 2.44 16 2 N -0.44 -9.35 3.68 -492.74 -1.82 -11.17 16 3 O 0.02 0.40 10.69 70.37 0.75 1.15 16 4 C 0.04 1.13 7.25 24.47 0.18 1.31 16 5 C 0.60 18.39 6.82 86.89 0.59 18.98 16 6 O -0.52 -20.14 14.39 -3.71 -0.05 -20.20 16 7 N -0.67 -17.74 5.23 -419.79 -2.20 -19.94 16 8 C 0.16 4.84 0.94 4.85 0.00 4.85 16 9 C -0.12 -3.19 5.75 32.12 0.18 -3.01 16 10 C -0.11 -1.78 6.92 32.35 0.22 -1.56 16 11 C -0.11 -1.80 6.38 31.63 0.20 -1.60 16 12 C -0.09 -2.10 3.67 -9.54 -0.03 -2.14 16 13 H 0.11 2.09 7.69 -2.39 -0.02 2.07 16 14 C 0.13 4.27 6.79 86.51 0.59 4.86 16 15 N -0.62 -28.81 3.21 -695.23 -2.23 -31.04 16 16 C -0.22 -12.49 10.67 84.03 0.90 -11.60 16 17 H 0.07 4.38 8.06 -2.91 -0.02 4.36 16 18 C -0.03 -1.87 5.45 84.86 0.46 -1.41 16 19 N -0.95 -61.19 13.97 21.65 0.30 -60.89 16 20 Si 0.93 49.98 24.36 68.60 1.67 51.65 16 21 H -0.29 -15.68 6.37 99.48 0.63 -15.04 16 22 H -0.31 -16.73 7.11 99.48 0.71 -16.03 16 23 H -0.27 -13.70 6.49 99.48 0.65 -13.05 16 24 C 0.11 4.55 3.51 86.51 0.30 4.86 16 25 C -0.25 -7.18 10.94 22.84 0.25 -6.93 16 26 C 0.47 13.59 8.02 85.26 0.68 14.27 16 27 O -0.56 -19.70 17.84 -5.26 -0.09 -19.80 16 28 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.11 1.20 8.03 -2.39 -0.02 1.18 16 31 H 0.42 8.07 8.09 -92.71 -0.75 7.32 16 32 H 0.07 1.90 6.69 -2.39 -0.02 1.89 16 33 H 0.06 1.81 7.18 -2.38 -0.02 1.80 16 34 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.07 1.29 7.17 -2.39 -0.02 1.27 16 37 H 0.10 1.12 8.14 -2.39 -0.02 1.11 16 38 H 0.04 1.25 7.12 -2.39 -0.02 1.23 16 39 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 40 H 0.26 16.10 8.31 -92.71 -0.77 15.33 16 41 H 0.02 1.08 5.15 -2.39 -0.01 1.07 16 42 H 0.04 1.82 4.37 -2.39 -0.01 1.81 16 43 H 0.19 5.32 8.06 -2.91 -0.02 5.30 16 Total: -1.00 -82.35 342.42 2.48 -79.88 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: 0.17 Total: 7.02 kcal Atomic # 6 Polarization: 17.36 SS G_CDS: 5.97 Total: 23.32 kcal Atomic # 7 Polarization: -117.09 SS G_CDS: -5.94 Total: -123.03 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: 0.60 Total: -38.84 kcal Atomic # 14 Polarization: 49.98 SS G_CDS: 1.67 Total: 51.65 kcal Total: -82.35 2.48 -79.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098812929.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.383 kcal (2) G-P(sol) polarization free energy of solvation -82.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds