Wall clock time and date at job start Tue Mar 31 2020 13:51:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35354 * 116.99742 * 2 1 4 4 N 1.30555 * 125.44625 * 180.29618 * 3 2 1 5 5 C 1.36329 * 108.38411 * 180.16198 * 4 3 2 6 6 C 1.47368 * 126.41355 * 179.82920 * 5 4 3 7 7 O 1.21624 * 119.99720 * 179.69150 * 6 5 4 8 8 N 1.34772 * 120.00230 * 359.68827 * 6 5 4 9 9 C 1.46495 * 120.00287 * 180.02562 * 8 6 5 10 10 C 1.54329 * 111.69191 * 298.98436 * 9 8 6 11 11 C 1.55057 * 103.93591 * 262.78442 * 10 9 8 12 12 C 1.55049 * 102.11115 * 319.94729 * 11 10 9 13 13 C 1.54319 * 103.93912 * 40.06176 * 12 11 10 14 14 H 1.08997 * 111.69618 * 97.20435 * 13 12 11 15 15 C 1.53787 * 109.05852 * 221.16507 * 13 12 11 16 16 N 1.47217 * 106.37927 * 94.87752 * 15 13 12 17 17 C 1.36932 * 126.70127 * 211.26615 * 16 15 13 18 18 H 1.08002 * 120.00109 * 180.02562 * 17 16 15 19 19 C 1.38817 * 120.00141 * 0.02624 * 17 16 15 20 20 N 1.31617 * 119.99614 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00087 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47424 * 59.99647 * 21 19 17 23 23 H 1.48507 * 109.47066 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46814 * 299.99595 * 21 19 17 25 25 C 1.47211 * 106.59322 * 31.29077 * 16 15 13 26 26 C 1.35917 * 107.17318 * 359.56636 * 5 4 3 27 27 O 1.34202 * 125.44868 * 359.97438 * 3 2 1 28 28 H 1.08999 * 109.46679 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47292 * 299.99773 * 1 2 3 30 30 H 1.08995 * 109.47328 * 60.00440 * 1 2 3 31 31 H 0.97011 * 119.99749 * 0.02562 * 8 6 5 32 32 H 1.08994 * 110.53630 * 144.16463 * 10 9 8 33 33 H 1.08998 * 110.52869 * 21.39230 * 10 9 8 34 34 H 1.08998 * 110.90142 * 78.15239 * 11 10 9 35 35 H 1.08997 * 110.90019 * 201.70760 * 11 10 9 36 36 H 1.09005 * 110.53259 * 158.67741 * 12 11 10 37 37 H 1.09002 * 110.53474 * 281.29930 * 12 11 10 38 38 H 1.08998 * 110.07196 * 214.10699 * 15 13 12 39 39 H 1.08997 * 110.06978 * 335.64661 * 15 13 12 40 40 H 0.97003 * 119.99963 * 179.97438 * 20 19 17 41 41 H 1.08996 * 110.07552 * 87.94167 * 25 16 15 42 42 H 1.09004 * 110.07137 * 209.48913 * 25 16 15 43 43 H 1.07998 * 126.46008 * 180.22667 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2060 0.0000 4 7 3.3348 1.3979 -0.0055 5 6 3.5700 2.7407 0.0002 6 6 4.8891 3.3977 0.0005 7 8 4.9638 4.6117 0.0003 8 7 6.0127 2.6535 0.0011 9 6 7.3240 3.3066 0.0019 10 6 7.5255 4.1831 -1.2522 11 6 8.3293 3.2742 -2.2178 12 6 9.3252 2.5774 -1.2552 13 6 8.4796 2.2754 -0.0001 14 1 8.1076 1.2509 -0.0019 15 6 9.3181 2.5739 1.2541 16 7 8.9795 3.9471 1.6626 17 6 9.8077 4.8443 2.2823 18 1 9.4442 5.8294 2.5353 19 6 11.1147 4.4879 2.5854 20 7 11.5575 3.2873 2.2775 21 14 12.2443 5.7116 3.4314 22 1 11.6640 6.0962 4.7430 23 1 13.5772 5.0913 3.6418 24 1 12.3902 6.9203 2.5811 25 6 7.5763 4.1670 1.2754 26 6 2.3602 3.3601 -0.0003 27 8 1.4226 2.3958 -0.0005 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 5.9531 1.6852 0.0009 32 1 8.0964 5.0782 -1.0055 33 1 6.5639 4.4504 -1.6903 34 1 7.6774 2.5445 -2.6980 35 1 8.8585 3.8694 -2.9619 36 1 9.6995 1.6532 -1.6956 37 1 10.1514 3.2451 -1.0108 38 1 9.0638 1.8734 2.0495 39 1 10.3802 2.5046 1.0192 40 1 12.4709 3.0383 2.4889 41 1 6.9119 3.8418 2.0758 42 1 7.4098 5.2216 1.0554 43 1 2.1847 4.4257 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098962322.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:18 Heat of formation + Delta-G solvation = -9.152095 kcal Electronic energy + Delta-G solvation = -27692.383156 eV Core-core repulsion = 23741.070176 eV Total energy + Delta-G solvation = -3951.312980 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.65833 -40.05693 -39.14636 -38.01468 -35.12360 -34.38438 -33.24895 -31.36610 -30.37208 -29.29769 -27.84305 -27.69326 -24.88745 -24.56421 -23.76999 -22.63600 -21.18458 -20.49626 -19.92837 -18.85912 -18.61312 -17.77360 -17.27578 -16.89376 -16.54207 -15.70886 -15.52338 -15.48080 -14.75750 -14.65781 -14.16725 -13.86992 -13.75334 -13.43107 -13.33800 -13.03393 -12.72026 -12.57941 -12.32048 -11.81105 -11.34105 -11.17661 -10.99539 -10.98121 -10.86749 -10.62532 -10.50044 -10.27528 -10.14468 -10.09319 -9.94553 -9.86774 -9.69525 -9.52053 -8.94600 -8.69213 -8.53626 -6.80887 -5.59797 -3.04099 0.95855 1.64081 1.89655 2.48390 3.28219 3.40378 3.44324 3.48130 3.49640 4.35159 4.46654 4.53767 4.54604 4.69803 4.84725 4.96746 5.06709 5.21360 5.29133 5.42781 5.53225 5.60125 5.72398 5.90721 5.93704 6.09124 6.17588 6.20328 6.30536 6.33486 6.41612 6.47892 6.62583 6.69631 6.82834 6.89041 7.02768 7.14258 7.29638 7.49297 7.66416 7.81321 7.90176 8.39008 8.47107 9.25884 9.86198 10.53962 11.41439 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021671 B = 0.003039 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.752656 B = 9212.496237 C = 9464.785598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.245 6.245 3 C 0.377 3.623 4 N -0.454 5.454 5 C -0.040 4.040 6 C 0.599 3.401 7 O -0.528 6.528 8 N -0.686 5.686 9 C 0.153 3.847 10 C -0.110 4.110 11 C -0.126 4.126 12 C -0.108 4.108 13 C -0.114 4.114 14 H 0.070 0.930 15 C 0.139 3.861 16 N -0.592 5.592 17 C -0.215 4.215 18 H 0.078 0.922 19 C -0.012 4.012 20 N -0.922 5.922 21 Si 0.916 3.084 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.285 1.285 25 C 0.143 3.857 26 C -0.002 4.002 27 O -0.227 6.227 28 H 0.119 0.881 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.406 0.594 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.056 0.944 37 H 0.080 0.920 38 H 0.004 0.996 39 H 0.130 0.870 40 H 0.253 0.747 41 H 0.014 0.986 42 H 0.052 0.948 43 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.707 -5.949 -8.342 23.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.152 6.152 3 C 0.131 3.869 4 N -0.199 5.199 5 C -0.159 4.159 6 C 0.383 3.617 7 O -0.405 6.405 8 N -0.336 5.336 9 C 0.066 3.934 10 C -0.149 4.149 11 C -0.163 4.163 12 C -0.146 4.146 13 C -0.135 4.135 14 H 0.088 0.912 15 C 0.014 3.986 16 N -0.316 5.316 17 C -0.343 4.343 18 H 0.096 0.904 19 C -0.207 4.207 20 N -0.571 5.571 21 Si 0.747 3.253 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.015 3.985 26 C -0.074 4.074 27 O -0.118 6.118 28 H 0.137 0.863 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.242 0.758 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.022 0.978 39 H 0.147 0.853 40 H 0.064 0.936 41 H 0.031 0.969 42 H 0.070 0.930 43 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -19.946 -5.781 -8.235 22.340 hybrid contribution -0.489 0.494 0.548 0.885 sum -20.435 -5.287 -7.687 22.464 Atomic orbital electron populations 1.23292 0.75201 1.05612 1.02978 1.86388 1.23582 1.15924 1.89344 1.23375 0.85672 0.79547 0.98323 1.71126 1.09669 1.15916 1.23234 1.21883 0.96221 0.88173 1.09642 1.16634 0.81761 0.86182 0.77136 1.90844 1.86480 1.12481 1.50675 1.45846 1.04902 1.10304 1.72509 1.22241 0.80167 0.93821 0.97136 1.22626 0.99869 0.98145 0.94235 1.22608 0.97888 0.98394 0.97425 1.22438 0.98060 0.99972 0.94091 1.23039 0.94680 0.96499 0.99246 0.91180 1.22047 1.02090 0.84908 0.89567 1.44417 1.06709 1.11873 1.68593 1.19054 0.91601 0.93925 1.29697 0.90394 1.24757 0.97207 0.97009 1.01757 1.69582 1.16355 1.18400 1.52810 0.86123 0.79906 0.80031 0.79282 1.21281 1.21601 1.21161 1.21824 0.87583 0.97134 0.91918 1.24975 0.84915 0.93746 1.03767 1.84374 1.39588 1.15865 1.72005 0.86332 0.91399 0.91453 0.75822 0.90234 0.91791 0.92479 0.92116 0.92539 0.90098 0.97811 0.85279 0.93635 0.96857 0.92983 0.74726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 10.73 101.05 1.08 1.19 16 2 O -0.24 -2.33 10.55 -40.99 -0.43 -2.76 16 3 C 0.38 4.39 8.98 52.22 0.47 4.86 16 4 N -0.45 -6.36 11.10 -11.71 -0.13 -6.49 16 5 C -0.04 -0.56 6.99 -82.99 -0.58 -1.14 16 6 C 0.60 9.91 7.14 -12.55 -0.09 9.82 16 7 O -0.53 -9.84 14.96 5.26 0.08 -9.77 16 8 N -0.69 -11.49 5.25 -45.78 -0.24 -11.73 16 9 C 0.15 2.91 0.94 -128.67 -0.12 2.79 16 10 C -0.11 -1.99 5.55 -24.95 -0.14 -2.13 16 11 C -0.13 -2.00 6.92 -24.56 -0.17 -2.17 16 12 C -0.11 -1.93 6.22 -24.96 -0.16 -2.08 16 13 C -0.11 -2.21 3.62 -88.52 -0.32 -2.53 16 14 H 0.07 1.22 7.71 -51.93 -0.40 0.82 16 15 C 0.14 3.40 5.56 -3.24 -0.02 3.38 16 16 N -0.59 -15.47 3.39 -169.89 -0.58 -16.05 16 17 C -0.21 -6.04 10.34 -15.06 -0.16 -6.20 16 18 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 19 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 20 N -0.92 -26.62 10.08 55.49 0.56 -26.06 16 21 Si 0.92 22.23 29.55 -169.99 -5.02 17.21 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 C 0.14 3.28 5.51 -2.19 -0.01 3.27 16 26 C 0.00 -0.02 11.93 29.90 0.36 0.33 16 27 O -0.23 -2.32 10.20 -17.76 -0.18 -2.50 16 28 H 0.12 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.41 6.25 8.02 -40.82 -0.33 5.92 16 32 H 0.08 1.58 7.57 -51.93 -0.39 1.18 16 33 H 0.06 1.13 6.64 -51.93 -0.34 0.79 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 37 H 0.08 1.67 7.59 -51.93 -0.39 1.28 16 38 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 39 H 0.13 3.47 4.90 -51.93 -0.25 3.22 16 40 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.01 0.33 8.10 -51.93 -0.42 -0.09 16 42 H 0.05 1.23 7.63 -51.93 -0.40 0.83 16 43 H 0.24 1.81 8.06 -52.49 -0.42 1.38 16 LS Contribution 351.65 15.07 5.30 5.30 Total: -1.00 -32.71 351.65 -6.45 -39.17 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.86 Total: 4.74 kcal Atomic # 6 Polarization: 8.89 SS G_CDS: 0.05 Total: 8.95 kcal Atomic # 7 Polarization: -59.94 SS G_CDS: -0.39 Total: -60.33 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: -0.53 Total: -15.02 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.71 -6.45 -39.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098962322.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.014 kcal (2) G-P(sol) polarization free energy of solvation -32.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds