Wall clock time and date at job start Tue Mar 31 2020 13:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35354 * 116.99742 * 2 1 4 4 N 1.30555 * 125.44625 * 180.29618 * 3 2 1 5 5 C 1.36329 * 108.38411 * 180.16198 * 4 3 2 6 6 C 1.47368 * 126.41355 * 179.82920 * 5 4 3 7 7 O 1.21624 * 119.99720 * 179.69150 * 6 5 4 8 8 N 1.34772 * 120.00230 * 359.68827 * 6 5 4 9 9 C 1.46495 * 120.00287 * 180.02562 * 8 6 5 10 10 C 1.54329 * 111.69191 * 298.98436 * 9 8 6 11 11 C 1.55057 * 103.93591 * 262.78442 * 10 9 8 12 12 C 1.55049 * 102.11115 * 319.94729 * 11 10 9 13 13 C 1.54319 * 103.93912 * 40.06176 * 12 11 10 14 14 H 1.08997 * 111.69618 * 97.20435 * 13 12 11 15 15 C 1.53787 * 109.05852 * 221.16507 * 13 12 11 16 16 N 1.47217 * 106.37927 * 94.87752 * 15 13 12 17 17 C 1.36932 * 126.70127 * 211.26615 * 16 15 13 18 18 H 1.08002 * 120.00109 * 180.02562 * 17 16 15 19 19 C 1.38817 * 120.00141 * 0.02624 * 17 16 15 20 20 N 1.31617 * 119.99614 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00087 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47424 * 59.99647 * 21 19 17 23 23 H 1.48507 * 109.47066 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46814 * 299.99595 * 21 19 17 25 25 C 1.47211 * 106.59322 * 31.29077 * 16 15 13 26 26 C 1.35917 * 107.17318 * 359.56636 * 5 4 3 27 27 O 1.34202 * 125.44868 * 359.97438 * 3 2 1 28 28 H 1.08999 * 109.46679 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47292 * 299.99773 * 1 2 3 30 30 H 1.08995 * 109.47328 * 60.00440 * 1 2 3 31 31 H 0.97011 * 119.99749 * 0.02562 * 8 6 5 32 32 H 1.08994 * 110.53630 * 144.16463 * 10 9 8 33 33 H 1.08998 * 110.52869 * 21.39230 * 10 9 8 34 34 H 1.08998 * 110.90142 * 78.15239 * 11 10 9 35 35 H 1.08997 * 110.90019 * 201.70760 * 11 10 9 36 36 H 1.09005 * 110.53259 * 158.67741 * 12 11 10 37 37 H 1.09002 * 110.53474 * 281.29930 * 12 11 10 38 38 H 1.08998 * 110.07196 * 214.10699 * 15 13 12 39 39 H 1.08997 * 110.06978 * 335.64661 * 15 13 12 40 40 H 0.97003 * 119.99963 * 179.97438 * 20 19 17 41 41 H 1.08996 * 110.07552 * 87.94167 * 25 16 15 42 42 H 1.09004 * 110.07137 * 209.48913 * 25 16 15 43 43 H 1.07998 * 126.46008 * 180.22667 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0434 1.2060 0.0000 4 7 3.3348 1.3979 -0.0055 5 6 3.5700 2.7407 0.0002 6 6 4.8891 3.3977 0.0005 7 8 4.9638 4.6117 0.0003 8 7 6.0127 2.6535 0.0011 9 6 7.3240 3.3066 0.0019 10 6 7.5255 4.1831 -1.2522 11 6 8.3293 3.2742 -2.2178 12 6 9.3252 2.5774 -1.2552 13 6 8.4796 2.2754 -0.0001 14 1 8.1076 1.2509 -0.0019 15 6 9.3181 2.5739 1.2541 16 7 8.9795 3.9471 1.6626 17 6 9.8077 4.8443 2.2823 18 1 9.4442 5.8294 2.5353 19 6 11.1147 4.4879 2.5854 20 7 11.5575 3.2873 2.2775 21 14 12.2443 5.7116 3.4314 22 1 11.6640 6.0962 4.7430 23 1 13.5772 5.0913 3.6418 24 1 12.3902 6.9203 2.5811 25 6 7.5763 4.1670 1.2754 26 6 2.3602 3.3601 -0.0003 27 8 1.4226 2.3958 -0.0005 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 5.9531 1.6852 0.0009 32 1 8.0964 5.0782 -1.0055 33 1 6.5639 4.4504 -1.6903 34 1 7.6774 2.5445 -2.6980 35 1 8.8585 3.8694 -2.9619 36 1 9.6995 1.6532 -1.6956 37 1 10.1514 3.2451 -1.0108 38 1 9.0638 1.8734 2.0495 39 1 10.3802 2.5046 1.0192 40 1 12.4709 3.0383 2.4889 41 1 6.9119 3.8418 2.0758 42 1 7.4098 5.2216 1.0554 43 1 2.1847 4.4257 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098962322.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:17 Heat of formation + Delta-G solvation = -35.304927 kcal Electronic energy + Delta-G solvation = -27693.517228 eV Core-core repulsion = 23741.070176 eV Total energy + Delta-G solvation = -3952.447052 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.54434 -41.53117 -39.88298 -39.43168 -36.25567 -36.07947 -34.62616 -33.38539 -31.36263 -30.88126 -29.43499 -28.29334 -26.57735 -26.28721 -25.10412 -23.52103 -22.50295 -22.22016 -21.17524 -20.30853 -19.82115 -18.97896 -18.58190 -18.18149 -17.42377 -17.20700 -16.71142 -16.32910 -16.25886 -15.96364 -15.57968 -15.44754 -15.23130 -14.90717 -14.73820 -14.53974 -14.40460 -13.58916 -13.09412 -13.08822 -12.97062 -12.78852 -12.76866 -12.20489 -12.13886 -12.06487 -12.02418 -11.92143 -11.88197 -11.71412 -11.62520 -11.59541 -11.42100 -11.11198 -10.73284 -10.13011 -9.75556 -8.91137 -7.74696 -5.23089 0.02666 0.86977 0.91600 1.47324 1.50624 1.56948 1.69698 2.06243 2.20828 2.50260 3.27858 3.32729 3.48071 3.72061 3.75194 3.83878 3.88640 4.12682 4.22153 4.26286 4.38201 4.41990 4.43657 4.49437 4.59664 4.65890 4.68560 4.72817 4.80452 4.90322 4.94947 5.04287 5.10529 5.22484 5.27671 5.42338 5.48468 5.58755 5.61000 5.69022 5.82638 6.31491 6.38364 6.59932 7.08611 7.13559 7.75296 8.43102 9.24065 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.021671 B = 0.003039 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.752656 B = 9212.496237 C = 9464.785598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 O -0.256 6.256 3 C 0.383 3.617 4 N -0.484 5.484 5 C -0.074 4.074 6 C 0.601 3.399 7 O -0.555 6.555 8 N -0.684 5.684 9 C 0.167 3.833 10 C -0.106 4.106 11 C -0.111 4.111 12 C -0.104 4.104 13 C -0.106 4.106 14 H 0.096 0.904 15 C 0.142 3.858 16 N -0.611 5.611 17 C -0.239 4.239 18 H 0.076 0.924 19 C -0.060 4.060 20 N -0.943 5.943 21 Si 0.982 3.018 22 H -0.282 1.282 23 H -0.289 1.289 24 H -0.277 1.277 25 C 0.145 3.855 26 C 0.030 3.970 27 O -0.214 6.214 28 H 0.146 0.854 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.414 0.586 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.046 0.954 38 H -0.023 1.023 39 H 0.106 0.894 40 H 0.250 0.750 41 H -0.003 1.003 42 H 0.038 0.962 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.659 -6.431 -9.689 25.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.164 6.164 3 C 0.136 3.864 4 N -0.231 5.231 5 C -0.192 4.192 6 C 0.387 3.613 7 O -0.434 6.434 8 N -0.334 5.334 9 C 0.079 3.921 10 C -0.145 4.145 11 C -0.148 4.148 12 C -0.141 4.141 13 C -0.126 4.126 14 H 0.114 0.886 15 C 0.017 3.983 16 N -0.335 5.335 17 C -0.368 4.368 18 H 0.094 0.906 19 C -0.253 4.253 20 N -0.592 5.592 21 Si 0.809 3.191 22 H -0.208 1.208 23 H -0.215 1.215 24 H -0.203 1.203 25 C 0.017 3.983 26 C -0.043 4.043 27 O -0.105 6.105 28 H 0.164 0.836 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.251 0.749 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.065 0.935 38 H -0.005 1.005 39 H 0.124 0.876 40 H 0.060 0.940 41 H 0.015 0.985 42 H 0.056 0.944 43 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges -21.943 -6.291 -9.595 24.762 hybrid contribution -0.036 0.607 1.041 1.206 sum -21.980 -5.684 -8.554 24.261 Atomic orbital electron populations 1.23709 0.72586 1.07782 1.03922 1.86422 1.26176 1.14794 1.88972 1.23437 0.85453 0.80363 0.97164 1.71004 1.11252 1.16023 1.24811 1.21490 0.95685 0.88760 1.13250 1.16913 0.82513 0.85891 0.75974 1.90825 1.87070 1.13607 1.51867 1.45709 1.04151 1.10661 1.72881 1.21892 0.81400 0.93327 0.95435 1.22537 1.00174 0.97498 0.94273 1.22558 0.97247 0.98293 0.96704 1.22345 0.97230 1.00697 0.93860 1.22940 0.94294 0.97921 0.97422 0.88610 1.21895 1.01738 0.83725 0.90945 1.44636 1.07773 1.12287 1.68770 1.19357 0.92488 0.94415 1.30496 0.90650 1.25571 0.98402 0.98827 1.02483 1.69824 1.16335 1.19773 1.53300 0.85110 0.77664 0.78014 0.78263 1.20814 1.21462 1.20261 1.21850 0.85844 0.97204 0.93387 1.25546 0.83891 0.94768 1.00048 1.84424 1.38978 1.15486 1.71578 0.83624 0.90598 0.90345 0.74885 0.92729 0.91204 0.89917 0.90481 0.89881 0.93524 1.00507 0.87643 0.94003 0.98481 0.94377 0.71750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.08 10.73 113.37 1.22 1.30 16 2 O -0.26 -4.33 10.55 -64.23 -0.68 -5.01 16 3 C 0.38 8.19 8.98 130.43 1.17 9.36 16 4 N -0.48 -12.99 11.10 -419.38 -4.65 -17.65 16 5 C -0.07 -1.97 6.99 40.31 0.28 -1.69 16 6 C 0.60 19.56 7.14 86.65 0.62 20.18 16 7 O -0.55 -20.59 14.96 -4.11 -0.06 -20.65 16 8 N -0.68 -22.56 5.25 -417.01 -2.19 -24.75 16 9 C 0.17 6.37 0.94 5.65 0.01 6.38 16 10 C -0.11 -3.78 5.55 31.75 0.18 -3.61 16 11 C -0.11 -3.28 6.92 32.00 0.22 -3.06 16 12 C -0.10 -3.60 6.22 31.74 0.20 -3.40 16 13 C -0.11 -4.07 3.62 -9.44 -0.03 -4.11 16 14 H 0.10 3.20 7.71 -2.39 -0.02 3.18 16 15 C 0.14 7.21 5.56 86.51 0.48 7.69 16 16 N -0.61 -33.29 3.39 -691.41 -2.35 -35.64 16 17 C -0.24 -13.96 10.34 84.04 0.87 -13.09 16 18 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 19 C -0.06 -3.46 5.49 84.86 0.47 -3.00 16 20 N -0.94 -56.05 10.08 21.65 0.22 -55.83 16 21 Si 0.98 46.47 29.55 68.60 2.03 48.50 16 22 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 24 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 25 C 0.14 6.89 5.51 87.19 0.48 7.37 16 26 C 0.03 0.58 11.93 67.28 0.80 1.38 16 27 O -0.21 -3.81 10.20 18.88 0.19 -3.61 16 28 H 0.15 0.11 8.14 -2.39 -0.02 0.09 16 29 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.41 12.36 8.02 -92.70 -0.74 11.62 16 32 H 0.05 2.21 7.57 -2.39 -0.02 2.19 16 33 H 0.07 2.41 6.64 -2.39 -0.02 2.39 16 34 H 0.08 2.09 8.14 -2.39 -0.02 2.08 16 35 H 0.08 2.07 8.14 -2.39 -0.02 2.06 16 36 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 37 H 0.05 1.95 7.59 -2.39 -0.02 1.93 16 38 H -0.02 -1.25 8.14 -2.39 -0.02 -1.27 16 39 H 0.11 5.91 4.90 -2.39 -0.01 5.90 16 40 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 41 H 0.00 -0.13 8.10 -2.39 -0.02 -0.15 16 42 H 0.04 1.88 7.63 -2.39 -0.02 1.87 16 43 H 0.27 3.24 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -73.75 351.65 -0.23 -73.98 By element: Atomic # 1 Polarization: 18.64 SS G_CDS: 0.30 Total: 18.95 kcal Atomic # 6 Polarization: 14.76 SS G_CDS: 6.95 Total: 21.72 kcal Atomic # 7 Polarization: -124.90 SS G_CDS: -8.97 Total: -133.86 kcal Atomic # 8 Polarization: -28.73 SS G_CDS: -0.55 Total: -29.28 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -73.75 -0.23 -73.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098962322.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.672 kcal (2) G-P(sol) polarization free energy of solvation -73.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds