Wall clock time and date at job start Tue Mar 31 2020 12:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47214 * 2 1 4 4 C 1.46501 * 120.00017 * 262.08036 * 3 2 1 5 5 C 1.53006 * 109.46584 * 270.00070 * 4 3 2 6 6 N 1.46898 * 109.46802 * 180.02562 * 5 4 3 7 7 C 1.34774 * 119.99888 * 82.07551 * 3 2 1 8 8 O 1.21365 * 120.00064 * 181.50038 * 7 3 2 9 9 C 1.49319 * 120.00083 * 1.50306 * 7 3 2 10 10 O 1.21387 * 120.00051 * 2.82140 * 9 7 3 11 11 N 1.34773 * 120.00082 * 182.82679 * 9 7 3 12 12 C 1.39741 * 120.00138 * 176.39840 * 11 9 7 13 13 C 1.38997 * 120.00774 * 36.02544 * 12 11 9 14 14 C 1.37968 * 119.99218 * 180.02562 * 13 12 11 15 15 C 1.38939 * 120.00914 * 359.97438 * 14 13 12 16 16 O 1.35749 * 119.99605 * 179.97438 * 15 14 13 17 17 C 1.34810 * 116.99846 * 5.97225 * 16 15 14 18 18 H 1.08003 * 119.99802 * 354.83114 * 17 16 15 19 19 C 1.38648 * 119.99804 * 174.83387 * 17 16 15 20 20 N 1.31565 * 119.99776 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00521 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.46779 * 89.99986 * 21 19 17 23 23 H 1.48497 * 109.47563 * 210.00192 * 21 19 17 24 24 H 1.48507 * 109.46782 * 330.00321 * 21 19 17 25 25 C 1.38942 * 120.01071 * 0.25467 * 15 14 13 26 26 C 1.37968 * 120.00886 * 359.49061 * 25 15 14 27 27 H 1.08997 * 109.47474 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47076 * 300.00142 * 1 2 3 29 29 H 1.09005 * 109.46919 * 59.99564 * 1 2 3 30 30 H 1.09005 * 109.46956 * 240.00158 * 2 1 3 31 31 H 1.08993 * 109.47236 * 120.00199 * 2 1 3 32 32 H 1.08994 * 109.47202 * 29.99231 * 4 3 2 33 33 H 1.08994 * 109.47223 * 150.00250 * 4 3 2 34 34 H 1.09000 * 109.47113 * 299.99518 * 5 4 3 35 35 H 1.08996 * 109.47688 * 60.00046 * 5 4 3 36 36 H 1.00905 * 110.99848 * 179.97438 * 6 5 4 37 37 H 1.00900 * 110.99970 * 303.94969 * 6 5 4 38 38 H 0.97000 * 120.00070 * 356.39246 * 11 9 7 39 39 H 1.07999 * 119.99887 * 359.97438 * 13 12 11 40 40 H 1.07995 * 119.99725 * 179.97438 * 14 13 12 41 41 H 0.96998 * 120.00276 * 179.97438 * 20 19 17 42 42 H 1.08003 * 119.99337 * 179.72414 * 25 15 14 43 43 H 1.07998 * 120.00531 * 180.23001 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4274 2.0136 -1.2566 5 6 3.9168 1.7574 -1.4952 6 7 4.3271 2.3919 -2.7550 7 6 2.0913 2.0702 1.1560 8 8 2.4700 3.2232 1.1525 9 6 1.7062 1.4149 2.4413 10 8 1.3765 0.2467 2.4520 11 7 1.7245 2.1204 3.5894 12 6 1.2924 1.5294 4.7797 13 6 1.5475 0.1844 5.0206 14 6 1.1203 -0.3989 6.1956 15 6 0.4357 0.3580 7.1384 16 8 0.0150 -0.2163 8.2942 17 6 0.3997 -1.4883 8.5209 18 1 0.9440 -2.0312 7.7623 19 6 0.0966 -2.0995 9.7279 20 7 0.4716 -3.3411 9.9490 21 14 -0.8442 -1.1604 11.0403 22 1 -2.3017 -1.3720 10.8514 23 1 -0.4428 -1.6504 12.3834 24 1 -0.5358 0.2881 10.9293 25 6 0.1765 1.7013 6.8958 26 6 0.6080 2.2866 5.7233 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.8500 1.5929 -2.0798 33 1 2.2482 3.0871 -1.1983 34 1 4.4943 2.1780 -0.6720 35 1 4.0962 0.6838 -1.5535 36 1 5.3079 2.2373 -2.9351 37 1 3.7621 2.0661 -3.5248 38 1 2.0377 3.0385 3.5896 39 1 2.0792 -0.4041 4.2876 40 1 1.3180 -1.4440 6.3827 41 1 0.2599 -3.7686 10.7935 42 1 -0.3596 2.2883 7.6269 43 1 0.4097 3.3316 5.5364 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001118916265.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:35 Heat of formation + Delta-G solvation = -46.304866 kcal Electronic energy + Delta-G solvation = -26556.581515 eV Core-core repulsion = 22603.657470 eV Total energy + Delta-G solvation = -3952.924045 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -41.16893 -39.53674 -38.59189 -37.12223 -36.60791 -34.90616 -33.95717 -32.37673 -30.96187 -30.38483 -28.86974 -28.04124 -25.52135 -24.56381 -23.53242 -22.77160 -22.12706 -20.85034 -19.84165 -18.27119 -17.73928 -17.48093 -17.22925 -16.48212 -16.36401 -16.30992 -15.40087 -15.11130 -14.78683 -14.49945 -14.12736 -13.97855 -13.92118 -13.84062 -13.74022 -13.71656 -12.99921 -12.82641 -12.48847 -12.38307 -12.30265 -12.22869 -11.93313 -11.74908 -11.64173 -11.39889 -11.07833 -10.98242 -10.77410 -10.27300 -9.81370 -9.50840 -9.30779 -9.22355 -9.02212 -8.82731 -8.36626 -7.16809 -6.45999 -4.11816 1.20177 2.01054 2.04702 2.24874 3.12503 3.20937 3.23139 3.32106 3.37340 4.19748 4.20043 4.22721 4.42357 4.55892 4.66637 4.78102 4.80198 5.00966 5.06177 5.13310 5.28201 5.38763 5.49311 5.50318 5.55485 5.61668 5.76307 5.95212 6.00941 6.10484 6.11668 6.16370 6.49059 6.57711 6.65131 6.74586 6.84944 6.92213 6.97198 7.21068 7.28377 7.50907 7.62978 7.73816 7.95690 8.04653 8.88568 9.49507 10.61249 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.028535 B = 0.002421 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.027540 B =11561.319759 C =11984.624938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.088 3.912 3 N -0.584 5.584 4 C 0.114 3.886 5 C 0.046 3.954 6 N -0.847 5.847 7 C 0.510 3.490 8 O -0.520 6.520 9 C 0.497 3.503 10 O -0.499 6.499 11 N -0.626 5.626 12 C 0.033 3.967 13 C -0.061 4.061 14 C -0.208 4.208 15 C 0.156 3.844 16 O -0.213 6.213 17 C -0.389 4.389 18 H 0.108 0.892 19 C 0.063 3.937 20 N -0.876 5.876 21 Si 0.906 3.094 22 H -0.273 1.273 23 H -0.282 1.282 24 H -0.259 1.259 25 C -0.177 4.177 26 C -0.087 4.087 27 H 0.069 0.931 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.072 0.928 31 H 0.120 0.880 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.077 0.923 35 H 0.030 0.970 36 H 0.347 0.653 37 H 0.340 0.660 38 H 0.414 0.586 39 H 0.127 0.873 40 H 0.138 0.862 41 H 0.280 0.720 42 H 0.123 0.877 43 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.932 8.938 -21.806 23.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.034 4.034 3 N -0.318 5.318 4 C -0.009 4.009 5 C -0.086 4.086 6 N -0.377 5.377 7 C 0.293 3.707 8 O -0.395 6.395 9 C 0.279 3.721 10 O -0.375 6.375 11 N -0.271 5.271 12 C -0.060 4.060 13 C -0.080 4.080 14 C -0.228 4.228 15 C 0.103 3.897 16 O -0.118 6.118 17 C -0.465 4.465 18 H 0.125 0.875 19 C -0.140 4.140 20 N -0.514 5.514 21 Si 0.732 3.268 22 H -0.198 1.198 23 H -0.208 1.208 24 H -0.183 1.183 25 C -0.197 4.197 26 C -0.107 4.107 27 H 0.088 0.912 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.090 0.910 31 H 0.137 0.863 32 H 0.098 0.902 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.049 0.951 36 H 0.160 0.840 37 H 0.152 0.848 38 H 0.251 0.749 39 H 0.144 0.856 40 H 0.156 0.844 41 H 0.090 0.910 42 H 0.141 0.859 43 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.547 9.288 -21.118 23.341 hybrid contribution 0.020 -0.481 0.135 0.500 sum 3.567 8.807 -20.983 23.034 Atomic orbital electron populations 1.22078 0.95209 1.02722 1.01831 1.22255 0.95396 0.80757 1.04959 1.47810 1.62649 1.15098 1.06204 1.21497 0.94297 1.00425 0.84694 1.22131 0.96498 0.96562 0.93367 1.58563 1.08981 1.65534 1.04650 1.20174 0.79143 0.86225 0.85199 1.90766 1.45623 1.16521 1.86621 1.20006 0.80033 0.87192 0.84877 1.90681 1.45699 1.15370 1.85719 1.42888 1.61646 1.16949 1.05634 1.17286 1.07217 0.94035 0.87438 1.20846 0.97866 0.93109 0.96216 1.21202 1.05370 1.01642 0.94580 1.19183 0.92305 0.91603 0.86637 1.83559 1.64951 1.29383 1.33872 1.20788 1.37326 0.84886 1.03473 0.87491 1.24488 0.96822 0.95436 0.97280 1.69648 1.44519 1.11344 1.25864 0.86167 0.80014 0.80996 0.79660 1.19842 1.20782 1.18293 1.20001 1.07963 0.92786 0.98965 1.20395 0.97754 0.98920 0.93626 0.91169 0.91995 0.93282 0.91002 0.86283 0.90219 0.88630 0.90435 0.95137 0.84041 0.84786 0.74948 0.85560 0.84445 0.90964 0.85866 0.86275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.71 37.16 0.36 -1.16 16 2 C 0.09 0.81 5.72 -4.04 -0.02 0.78 16 3 N -0.58 -5.89 2.49 -174.24 -0.43 -6.33 16 4 C 0.11 0.94 5.64 -4.04 -0.02 0.92 16 5 C 0.05 0.35 7.11 -3.82 -0.03 0.33 16 6 N -0.85 -5.30 9.62 -10.37 -0.10 -5.40 16 7 C 0.51 6.44 7.67 -11.65 -0.09 6.35 16 8 O -0.52 -7.40 16.05 5.48 0.09 -7.31 16 9 C 0.50 6.94 7.30 -11.65 -0.09 6.85 16 10 O -0.50 -7.62 9.43 5.46 0.05 -7.57 16 11 N -0.63 -8.73 5.32 -10.27 -0.05 -8.78 16 12 C 0.03 0.54 6.28 -83.69 -0.53 0.02 16 13 C -0.06 -1.13 8.67 -39.40 -0.34 -1.47 16 14 C -0.21 -4.45 9.16 -39.42 -0.36 -4.81 16 15 C 0.16 3.49 6.65 -39.06 -0.26 3.23 16 16 O -0.21 -5.48 8.58 0.11 0.00 -5.47 16 17 C -0.39 -10.76 9.94 30.88 0.31 -10.45 16 18 H 0.11 3.02 5.43 -52.48 -0.29 2.74 16 19 C 0.06 1.75 5.49 -17.51 -0.10 1.65 16 20 N -0.88 -24.95 13.96 55.48 0.77 -24.18 16 21 Si 0.91 21.27 28.62 -169.99 -4.86 16.41 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 24 H -0.26 -6.07 7.11 56.52 0.40 -5.67 16 25 C -0.18 -3.34 9.98 -39.42 -0.39 -3.73 16 26 C -0.09 -1.41 9.96 -39.40 -0.39 -1.80 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.74 6.90 -51.93 -0.36 0.38 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.07 0.49 8.01 -51.93 -0.42 0.07 16 31 H 0.12 1.32 5.39 -51.94 -0.28 1.04 16 32 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 33 H 0.10 0.95 7.40 -51.93 -0.38 0.57 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 36 H 0.35 1.70 9.08 -39.29 -0.36 1.34 16 37 H 0.34 1.51 8.99 -39.29 -0.35 1.15 16 38 H 0.41 4.93 8.29 -40.82 -0.34 4.59 16 39 H 0.13 2.28 6.32 -52.49 -0.33 1.95 16 40 H 0.14 3.09 5.63 -52.49 -0.30 2.79 16 41 H 0.28 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.12 2.12 8.06 -52.48 -0.42 1.70 16 43 H 0.12 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 361.22 15.07 5.44 5.44 Total: -1.00 -30.69 361.22 -6.54 -37.22 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -5.49 Total: 9.26 kcal Atomic # 6 Polarization: -1.34 SS G_CDS: -1.95 Total: -3.29 kcal Atomic # 7 Polarization: -44.87 SS G_CDS: 0.19 Total: -44.69 kcal Atomic # 8 Polarization: -20.50 SS G_CDS: 0.14 Total: -20.36 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.86 Total: 16.41 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.69 -6.54 -37.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118916265.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.081 kcal (2) G-P(sol) polarization free energy of solvation -30.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds