Wall clock time and date at job start Tue Mar 31 2020 12:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.47214 * 2 1 4 4 C 1.46501 * 120.00017 * 262.08036 * 3 2 1 5 5 C 1.53006 * 109.46584 * 270.00070 * 4 3 2 6 6 N 1.46898 * 109.46802 * 180.02562 * 5 4 3 7 7 C 1.34774 * 119.99888 * 82.07551 * 3 2 1 8 8 O 1.21365 * 120.00064 * 181.50038 * 7 3 2 9 9 C 1.49319 * 120.00083 * 1.50306 * 7 3 2 10 10 O 1.21387 * 120.00051 * 2.82140 * 9 7 3 11 11 N 1.34773 * 120.00082 * 182.82679 * 9 7 3 12 12 C 1.39741 * 120.00138 * 176.39840 * 11 9 7 13 13 C 1.38997 * 120.00774 * 36.02544 * 12 11 9 14 14 C 1.37968 * 119.99218 * 180.02562 * 13 12 11 15 15 C 1.38939 * 120.00914 * 359.97438 * 14 13 12 16 16 O 1.35749 * 119.99605 * 179.97438 * 15 14 13 17 17 C 1.34810 * 116.99846 * 5.97225 * 16 15 14 18 18 H 1.08003 * 119.99802 * 354.83114 * 17 16 15 19 19 C 1.38648 * 119.99804 * 174.83387 * 17 16 15 20 20 N 1.31565 * 119.99776 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 120.00521 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.46779 * 89.99986 * 21 19 17 23 23 H 1.48497 * 109.47563 * 210.00192 * 21 19 17 24 24 H 1.48507 * 109.46782 * 330.00321 * 21 19 17 25 25 C 1.38942 * 120.01071 * 0.25467 * 15 14 13 26 26 C 1.37968 * 120.00886 * 359.49061 * 25 15 14 27 27 H 1.08997 * 109.47474 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47076 * 300.00142 * 1 2 3 29 29 H 1.09005 * 109.46919 * 59.99564 * 1 2 3 30 30 H 1.09005 * 109.46956 * 240.00158 * 2 1 3 31 31 H 1.08993 * 109.47236 * 120.00199 * 2 1 3 32 32 H 1.08994 * 109.47202 * 29.99231 * 4 3 2 33 33 H 1.08994 * 109.47223 * 150.00250 * 4 3 2 34 34 H 1.09000 * 109.47113 * 299.99518 * 5 4 3 35 35 H 1.08996 * 109.47688 * 60.00046 * 5 4 3 36 36 H 1.00905 * 110.99848 * 179.97438 * 6 5 4 37 37 H 1.00900 * 110.99970 * 303.94969 * 6 5 4 38 38 H 0.97000 * 120.00070 * 356.39246 * 11 9 7 39 39 H 1.07999 * 119.99887 * 359.97438 * 13 12 11 40 40 H 1.07995 * 119.99725 * 179.97438 * 14 13 12 41 41 H 0.96998 * 120.00276 * 179.97438 * 20 19 17 42 42 H 1.08003 * 119.99337 * 179.72414 * 25 15 14 43 43 H 1.07998 * 120.00531 * 180.23001 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4274 2.0136 -1.2566 5 6 3.9168 1.7574 -1.4952 6 7 4.3271 2.3919 -2.7550 7 6 2.0913 2.0702 1.1560 8 8 2.4700 3.2232 1.1525 9 6 1.7062 1.4149 2.4413 10 8 1.3765 0.2467 2.4520 11 7 1.7245 2.1204 3.5894 12 6 1.2924 1.5294 4.7797 13 6 1.5475 0.1844 5.0206 14 6 1.1203 -0.3989 6.1956 15 6 0.4357 0.3580 7.1384 16 8 0.0150 -0.2163 8.2942 17 6 0.3997 -1.4883 8.5209 18 1 0.9440 -2.0312 7.7623 19 6 0.0966 -2.0995 9.7279 20 7 0.4716 -3.3411 9.9490 21 14 -0.8442 -1.1604 11.0403 22 1 -2.3017 -1.3720 10.8514 23 1 -0.4428 -1.6504 12.3834 24 1 -0.5358 0.2881 10.9293 25 6 0.1765 1.7013 6.8958 26 6 0.6080 2.2866 5.7233 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.8500 1.5929 -2.0798 33 1 2.2482 3.0871 -1.1983 34 1 4.4943 2.1780 -0.6720 35 1 4.0962 0.6838 -1.5535 36 1 5.3079 2.2373 -2.9351 37 1 3.7621 2.0661 -3.5248 38 1 2.0377 3.0385 3.5896 39 1 2.0792 -0.4041 4.2876 40 1 1.3180 -1.4440 6.3827 41 1 0.2599 -3.7686 10.7935 42 1 -0.3596 2.2883 7.6269 43 1 0.4097 3.3316 5.5364 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001118916265.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:31 Heat of formation + Delta-G solvation = -69.142372 kcal Electronic energy + Delta-G solvation = -26557.571823 eV Core-core repulsion = 22603.657470 eV Total energy + Delta-G solvation = -3953.914353 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.28275 -40.97464 -39.95075 -38.39673 -37.72789 -35.74332 -35.14227 -34.36691 -31.94598 -31.70539 -30.21492 -29.01350 -27.28639 -25.73995 -24.36006 -24.08788 -23.32221 -22.19064 -20.97701 -19.90015 -19.28260 -18.72723 -18.50204 -17.64452 -17.33877 -17.08536 -16.66379 -16.18523 -16.05309 -15.79943 -15.67508 -15.44883 -15.22378 -14.89795 -14.74284 -14.49586 -14.41017 -14.19968 -14.11181 -13.80111 -13.46507 -13.32844 -13.09788 -12.94268 -12.76111 -12.53558 -12.44977 -12.28142 -12.00209 -11.93513 -11.51410 -11.11748 -10.71586 -10.46498 -9.99536 -9.88094 -9.65788 -8.76406 -8.49320 -6.21537 0.03569 0.48450 0.64743 1.17812 1.33960 1.38281 1.53955 2.02373 2.29187 2.31486 2.74309 2.99514 3.15369 3.17881 3.68326 3.90005 4.02352 4.04358 4.05984 4.13588 4.34868 4.42544 4.43643 4.50020 4.56076 4.61760 4.69715 4.78118 4.92567 4.96471 5.08395 5.14920 5.23822 5.30014 5.37345 5.44537 5.55193 5.73221 5.83774 5.88272 6.10847 6.14203 6.19815 6.55172 6.62396 6.84325 6.87728 7.56363 8.62048 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.028535 B = 0.002421 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.027540 B =11561.319759 C =11984.624938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.088 3.912 3 N -0.573 5.573 4 C 0.114 3.886 5 C 0.053 3.947 6 N -0.853 5.853 7 C 0.512 3.488 8 O -0.538 6.538 9 C 0.498 3.502 10 O -0.511 6.511 11 N -0.622 5.622 12 C 0.060 3.940 13 C -0.069 4.069 14 C -0.220 4.220 15 C 0.118 3.882 16 O -0.238 6.238 17 C -0.399 4.399 18 H 0.080 0.920 19 C 0.009 3.991 20 N -0.923 5.923 21 Si 0.973 3.027 22 H -0.266 1.266 23 H -0.269 1.269 24 H -0.258 1.258 25 C -0.168 4.168 26 C -0.074 4.074 27 H 0.075 0.925 28 H 0.033 0.967 29 H 0.065 0.935 30 H 0.105 0.895 31 H 0.099 0.901 32 H 0.110 0.890 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.041 0.959 36 H 0.355 0.645 37 H 0.352 0.648 38 H 0.428 0.572 39 H 0.129 0.871 40 H 0.112 0.888 41 H 0.285 0.715 42 H 0.145 0.855 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.560 11.482 -24.174 26.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.034 4.034 3 N -0.305 5.305 4 C -0.008 4.008 5 C -0.079 4.079 6 N -0.386 5.386 7 C 0.294 3.706 8 O -0.415 6.415 9 C 0.280 3.720 10 O -0.387 6.387 11 N -0.270 5.270 12 C -0.033 4.033 13 C -0.089 4.089 14 C -0.240 4.240 15 C 0.069 3.931 16 O -0.145 6.145 17 C -0.475 4.475 18 H 0.098 0.902 19 C -0.190 4.190 20 N -0.563 5.563 21 Si 0.795 3.205 22 H -0.191 1.191 23 H -0.194 1.194 24 H -0.182 1.182 25 C -0.187 4.187 26 C -0.093 4.093 27 H 0.094 0.906 28 H 0.052 0.948 29 H 0.084 0.916 30 H 0.123 0.877 31 H 0.117 0.883 32 H 0.128 0.872 33 H 0.098 0.902 34 H 0.071 0.929 35 H 0.060 0.940 36 H 0.169 0.831 37 H 0.166 0.834 38 H 0.267 0.733 39 H 0.147 0.853 40 H 0.129 0.871 41 H 0.094 0.906 42 H 0.162 0.838 43 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 3.194 11.856 -23.571 26.578 hybrid contribution 0.250 -1.125 0.434 1.231 sum 3.444 10.731 -23.137 25.736 Atomic orbital electron populations 1.22036 0.95234 1.02963 1.01203 1.22287 0.95263 0.80153 1.05655 1.47896 1.61292 1.15276 1.06081 1.21653 0.95225 0.99606 0.84349 1.21970 0.95547 0.97063 0.93320 1.58516 1.09885 1.65603 1.04576 1.19856 0.79448 0.86033 0.85262 1.90765 1.46884 1.17128 1.86755 1.20384 0.79225 0.86938 0.85440 1.90709 1.45814 1.16104 1.86110 1.42844 1.61824 1.17583 1.04729 1.17407 1.04679 0.93132 0.88123 1.20872 0.98245 0.94447 0.95348 1.21119 1.06303 1.00756 0.95834 1.19708 0.93927 0.93293 0.86193 1.83506 1.67042 1.28298 1.35688 1.20698 1.37489 0.86043 1.03314 0.90222 1.25321 0.97937 0.96338 0.99372 1.69737 1.46788 1.12904 1.26886 0.85185 0.78746 0.79418 0.77200 1.19114 1.19428 1.18223 1.20367 1.06996 0.91195 1.00150 1.20844 0.95683 1.00929 0.91878 0.90586 0.94790 0.91617 0.87664 0.88282 0.87216 0.90171 0.92866 0.94035 0.83137 0.83387 0.73287 0.85275 0.87056 0.90558 0.83770 0.81486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 9.71 71.98 0.70 -1.94 16 2 C 0.09 1.40 5.72 86.38 0.49 1.89 16 3 N -0.57 -10.25 2.49 -823.54 -2.05 -12.31 16 4 C 0.11 1.56 5.64 86.38 0.49 2.05 16 5 C 0.05 0.69 7.11 86.31 0.61 1.30 16 6 N -0.85 -8.60 9.62 -186.72 -1.80 -10.40 16 7 C 0.51 12.02 7.67 87.23 0.67 12.69 16 8 O -0.54 -14.36 16.05 -3.29 -0.05 -14.42 16 9 C 0.50 13.10 7.30 87.23 0.64 13.73 16 10 O -0.51 -15.18 9.43 -3.36 -0.03 -15.22 16 11 N -0.62 -15.86 5.32 -304.75 -1.62 -17.48 16 12 C 0.06 1.87 6.28 38.25 0.24 2.11 16 13 C -0.07 -2.59 8.67 22.39 0.19 -2.40 16 14 C -0.22 -9.84 9.16 22.37 0.20 -9.63 16 15 C 0.12 5.41 6.65 22.61 0.15 5.56 16 16 O -0.24 -12.66 8.58 -22.52 -0.19 -12.85 16 17 C -0.40 -23.35 9.94 67.92 0.68 -22.67 16 18 H 0.08 4.92 5.43 -2.91 -0.02 4.90 16 19 C 0.01 0.51 5.49 84.83 0.47 0.97 16 20 N -0.92 -54.99 13.96 21.61 0.30 -54.69 16 21 Si 0.97 44.81 28.62 68.60 1.96 46.77 16 22 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 23 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 24 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 25 C -0.17 -5.99 9.98 22.37 0.22 -5.77 16 26 C -0.07 -2.13 9.96 22.39 0.22 -1.91 16 27 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.03 0.76 6.90 -2.39 -0.02 0.74 16 29 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 30 H 0.11 1.03 8.01 -2.38 -0.02 1.01 16 31 H 0.10 2.07 5.39 -2.47 -0.01 2.05 16 32 H 0.11 0.89 8.07 -2.39 -0.02 0.87 16 33 H 0.08 1.42 7.40 -2.39 -0.02 1.40 16 34 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.35 2.70 9.08 -89.69 -0.81 1.89 16 37 H 0.35 2.07 8.99 -89.69 -0.81 1.26 16 38 H 0.43 8.85 8.29 -92.71 -0.77 8.08 16 39 H 0.13 4.72 6.32 -2.91 -0.02 4.71 16 40 H 0.11 5.50 5.63 -2.91 -0.02 5.48 16 41 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 42 H 0.14 4.55 8.06 -2.91 -0.02 4.53 16 43 H 0.17 3.34 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -70.40 361.22 1.19 -69.21 By element: Atomic # 1 Polarization: 26.68 SS G_CDS: -1.30 Total: 25.38 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: 5.98 Total: -4.00 kcal Atomic # 7 Polarization: -89.71 SS G_CDS: -5.17 Total: -94.88 kcal Atomic # 8 Polarization: -42.21 SS G_CDS: -0.28 Total: -42.48 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.96 Total: 46.77 kcal Total: -70.40 1.19 -69.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001118916265.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.065 kcal (2) G-P(sol) polarization free energy of solvation -70.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds