Wall clock time and date at job start Tue Mar 31 2020 12:44:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46498 * 109.47493 * 2 1 4 4 C 1.46503 * 119.99724 * 265.00093 * 3 2 1 5 5 C 1.50701 * 109.47182 * 263.14938 * 4 3 2 6 6 H 1.07992 * 120.00045 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99736 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00197 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99866 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47227 * 59.99610 * 9 7 5 11 11 H 1.48501 * 109.47017 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47082 * 299.99544 * 9 7 5 13 13 C 1.34775 * 120.00312 * 85.00222 * 3 2 1 14 14 O 1.21354 * 119.99632 * 4.03455 * 13 3 2 15 15 C 1.49370 * 120.00053 * 184.03726 * 13 3 2 16 16 O 1.21355 * 120.00399 * 354.69556 * 15 13 3 17 17 N 1.34781 * 120.00285 * 174.69875 * 15 13 3 18 18 C 1.39356 * 120.00340 * 179.97438 * 17 15 13 19 19 N 1.31259 * 127.11423 * 359.97438 * 18 17 15 20 20 O 1.21435 * 111.55958 * 180.02562 * 19 18 17 21 21 C 1.33263 * 111.47031 * 359.95057 * 20 19 18 22 22 C 1.35298 * 106.59541 * 0.08417 * 21 20 19 23 23 C 1.50069 * 124.93081 * 179.82266 * 22 21 20 24 24 C 1.53557 * 108.23024 * 343.93357 * 23 22 21 25 25 C 1.53116 * 109.50488 * 49.19837 * 24 23 22 26 26 C 1.50590 * 129.61353 * 180.21597 * 21 20 19 27 27 H 1.08997 * 109.47192 * 300.00252 * 1 2 3 28 28 H 1.09003 * 109.47214 * 60.00291 * 1 2 3 29 29 H 1.09007 * 109.47699 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47072 * 239.99508 * 2 1 3 31 31 H 1.09002 * 109.47265 * 120.00263 * 2 1 3 32 32 H 1.09000 * 109.47203 * 23.14866 * 4 3 2 33 33 H 1.08999 * 109.46871 * 143.14497 * 4 3 2 34 34 H 0.97005 * 120.00349 * 180.02562 * 8 7 5 35 35 H 0.97003 * 119.99315 * 359.97438 * 17 15 13 36 36 H 1.08998 * 109.71272 * 103.63765 * 23 22 21 37 37 H 1.09000 * 109.71005 * 224.26938 * 23 22 21 38 38 H 1.09004 * 109.47433 * 289.18348 * 24 23 22 39 39 H 1.08994 * 109.45807 * 169.20266 * 24 23 22 40 40 H 1.08994 * 109.42903 * 170.07950 * 25 24 23 41 41 H 1.08996 * 109.38646 * 50.20614 * 25 24 23 42 42 H 1.08998 * 109.69251 * 282.90218 * 26 21 20 43 43 H 1.08998 * 109.69436 * 43.44330 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3668 2.0348 -1.2640 5 6 3.8531 1.9313 -1.4900 6 1 4.4759 1.4293 -0.7646 7 6 4.4179 2.4785 -2.6225 8 7 3.6595 3.0904 -3.5057 9 14 6.2602 2.3496 -2.9032 10 1 6.6531 0.9187 -2.9618 11 1 6.6134 3.0123 -4.1843 12 1 6.9787 3.0148 -1.7867 13 6 2.1472 2.0504 1.1627 14 8 1.9288 1.4864 2.2148 15 6 2.5586 3.4864 1.1563 16 8 2.8699 4.0238 0.1137 17 7 2.5841 4.1853 2.3085 18 6 2.9684 5.5248 2.3026 19 7 3.3311 6.2401 1.2635 20 8 3.6093 7.3788 1.5809 21 6 3.4640 7.5691 2.8918 22 6 3.0487 6.3902 3.4098 23 6 2.7611 6.1434 4.8618 24 6 3.3902 7.2828 5.6766 25 6 2.9909 8.6289 5.0659 26 6 3.6905 8.8112 3.7126 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3635 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8397 1.5459 -2.0833 33 1 2.0779 3.0850 -1.2215 34 1 4.0567 3.4751 -4.3027 35 1 2.3349 3.7558 3.1418 36 1 1.6836 6.1255 5.0253 37 1 3.1955 5.1910 5.1659 38 1 4.4756 7.1845 5.6609 39 1 3.0358 7.2316 6.7061 40 1 3.2867 9.4341 5.7383 41 1 1.9107 8.6549 4.9222 42 1 4.7591 8.9587 3.8684 43 1 3.2721 9.6746 3.1955 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120949341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:25 Heat of formation + Delta-G solvation = 4.977798 kcal Electronic energy + Delta-G solvation = -27719.036238 eV Core-core repulsion = 23768.335976 eV Total energy + Delta-G solvation = -3950.700262 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -44.72654 -40.22771 -38.13565 -37.77954 -35.92602 -34.85181 -32.64087 -32.00634 -30.91632 -30.52868 -30.18932 -27.06199 -25.39853 -24.48274 -23.12898 -22.94704 -22.65032 -20.97735 -19.93891 -18.80383 -17.83175 -17.48972 -16.79367 -16.53446 -16.13795 -15.67121 -15.17795 -15.00738 -14.80500 -14.22970 -14.21190 -14.08840 -13.80717 -13.53112 -13.42568 -13.19472 -12.98318 -12.57191 -12.35706 -12.04959 -11.73869 -11.64620 -11.40681 -11.28747 -11.03632 -11.00792 -10.94061 -10.85159 -10.73141 -10.64918 -10.40396 -9.94287 -9.67358 -9.03035 -8.77937 -8.51979 -8.25335 -7.84115 -5.99374 -4.02667 1.58725 1.86179 2.61204 2.66167 3.15665 3.35542 3.39803 3.43096 3.88728 3.92118 4.28875 4.47615 4.49074 4.53757 4.74136 4.80560 4.98308 5.01053 5.19242 5.23179 5.35924 5.37459 5.48593 5.50465 5.54661 5.63729 5.67043 5.69718 5.77293 5.85977 5.97261 6.01058 6.14295 6.25517 6.52423 6.57516 6.68366 7.24603 7.41370 7.45021 7.88065 8.08703 8.20628 8.29160 8.60711 8.66712 8.98191 9.60641 11.09526 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012650 B = 0.004204 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.897508 B = 6659.340677 C = 8267.965775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.111 3.889 3 N -0.556 5.556 4 C 0.220 3.780 5 C -0.524 4.524 6 H 0.053 0.947 7 C 0.071 3.929 8 N -0.887 5.887 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.278 1.278 13 C 0.513 3.487 14 O -0.561 6.561 15 C 0.480 3.520 16 O -0.403 6.403 17 N -0.622 5.622 18 C 0.259 3.741 19 N -0.343 5.343 20 O 0.106 5.894 21 C -0.027 4.027 22 C -0.223 4.223 23 C -0.043 4.043 24 C -0.120 4.120 25 C -0.117 4.117 26 C -0.036 4.036 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.033 0.967 33 H 0.075 0.925 34 H 0.263 0.737 35 H 0.425 0.575 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.070 0.930 42 H 0.093 0.907 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.950 8.254 17.797 20.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.012 4.012 3 N -0.286 5.286 4 C 0.102 3.898 5 C -0.562 4.562 6 H 0.071 0.929 7 C -0.132 4.132 8 N -0.525 5.525 9 Si 0.722 3.278 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.203 1.203 13 C 0.295 3.705 14 O -0.443 6.443 15 C 0.260 3.740 16 O -0.266 6.266 17 N -0.279 5.279 18 C 0.009 3.991 19 N -0.058 5.058 20 O 0.045 5.955 21 C -0.092 4.092 22 C -0.229 4.229 23 C -0.081 4.081 24 C -0.158 4.158 25 C -0.155 4.155 26 C -0.074 4.074 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.093 0.907 32 H 0.051 0.949 33 H 0.092 0.908 34 H 0.073 0.927 35 H 0.264 0.736 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.111 0.889 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.710 8.130 15.923 18.259 hybrid contribution 0.877 -0.435 0.754 1.235 sum -2.833 7.696 16.676 18.584 Atomic orbital electron populations 1.22118 0.96239 1.01694 1.02216 1.21446 0.93797 0.82739 1.03176 1.48324 1.58797 1.13047 1.08405 1.20142 0.96478 0.95407 0.77799 1.21166 0.92047 1.36912 1.06116 0.92879 1.24801 0.97928 0.94636 0.95787 1.69901 1.35332 1.36512 1.10799 0.86624 0.85645 0.78035 0.77481 1.20334 1.21111 1.20336 1.19515 0.79703 0.86599 0.84689 1.90641 1.53178 1.69494 1.31008 1.20652 0.80977 0.88631 0.83694 1.91031 1.37826 1.69327 1.28377 1.42469 1.67041 1.06102 1.12296 1.19929 1.01378 0.87484 0.90307 1.74998 1.20539 0.90525 1.19720 1.84887 1.64207 1.24064 1.22332 1.23914 1.01993 0.98222 0.85061 1.20257 1.12651 0.92883 0.97101 1.19917 1.01242 0.99442 0.87470 1.21654 1.01282 0.93818 0.99008 1.21626 1.01045 0.97965 0.94823 1.20210 1.02498 0.91553 0.93136 0.92663 0.92318 0.91902 0.89589 0.90734 0.94893 0.90797 0.92732 0.73618 0.90330 0.90360 0.91302 0.90842 0.90313 0.91080 0.88920 0.89009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 10.20 37.15 0.38 -2.13 16 2 C 0.11 2.01 6.08 -4.05 -0.02 1.99 16 3 N -0.56 -12.27 2.49 -175.60 -0.44 -12.70 16 4 C 0.22 5.71 4.74 -5.19 -0.02 5.68 16 5 C -0.52 -14.93 8.36 -34.44 -0.29 -15.22 16 6 H 0.05 1.53 7.81 -52.49 -0.41 1.12 16 7 C 0.07 2.08 5.46 -17.82 -0.10 1.98 16 8 N -0.89 -26.73 13.29 55.43 0.74 -25.99 16 9 Si 0.89 22.61 29.54 -169.99 -5.02 17.59 16 10 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 13 C 0.51 11.12 7.63 -11.62 -0.09 11.03 16 14 O -0.56 -11.79 16.12 5.49 0.09 -11.70 16 15 C 0.48 10.58 7.73 -11.62 -0.09 10.49 16 16 O -0.40 -10.53 11.18 5.49 0.06 -10.47 16 17 N -0.62 -11.18 5.41 -11.81 -0.06 -11.24 16 18 C 0.26 4.61 7.89 -155.02 -1.22 3.39 16 19 N -0.34 -7.05 10.44 31.20 0.33 -6.73 16 20 O 0.11 1.79 11.19 19.01 0.21 2.01 16 21 C -0.03 -0.34 7.38 -35.41 -0.26 -0.60 16 22 C -0.22 -2.96 6.09 -105.02 -0.64 -3.60 16 23 C -0.04 -0.39 6.30 -27.90 -0.18 -0.57 16 24 C -0.12 -0.80 5.92 -26.38 -0.16 -0.96 16 25 C -0.12 -0.70 5.88 -26.45 -0.16 -0.86 16 26 C -0.04 -0.27 6.31 -27.72 -0.17 -0.45 16 27 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 1.52 8.03 -51.93 -0.42 1.10 16 31 H 0.07 1.31 7.52 -51.93 -0.39 0.92 16 32 H 0.03 0.87 8.02 -51.93 -0.42 0.45 16 33 H 0.07 2.11 5.37 -51.93 -0.28 1.83 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.43 6.29 8.30 -40.82 -0.34 5.95 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.48 8.12 -51.93 -0.42 0.06 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.44 8.12 -51.93 -0.42 0.02 16 42 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 359.84 15.07 5.42 5.42 Total: -1.00 -35.10 359.84 -7.73 -42.83 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -6.04 Total: 0.80 kcal Atomic # 6 Polarization: 13.21 SS G_CDS: -3.02 Total: 10.19 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: 0.56 Total: -56.67 kcal Atomic # 8 Polarization: -20.53 SS G_CDS: 0.36 Total: -20.16 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.02 Total: 17.59 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -35.10 -7.73 -42.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120949341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.810 kcal (2) G-P(sol) polarization free energy of solvation -35.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds