Wall clock time and date at job start Tue Mar 31 2020 12:44:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46498 * 109.47493 * 2 1 4 4 C 1.46503 * 119.99724 * 265.00093 * 3 2 1 5 5 C 1.50701 * 109.47182 * 263.14938 * 4 3 2 6 6 H 1.07992 * 120.00045 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99736 * 180.02562 * 5 4 3 8 8 N 1.31511 * 120.00197 * 359.97438 * 7 5 4 9 9 Si 1.86805 * 119.99866 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47227 * 59.99610 * 9 7 5 11 11 H 1.48501 * 109.47017 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.47082 * 299.99544 * 9 7 5 13 13 C 1.34775 * 120.00312 * 85.00222 * 3 2 1 14 14 O 1.21354 * 119.99632 * 4.03455 * 13 3 2 15 15 C 1.49370 * 120.00053 * 184.03726 * 13 3 2 16 16 O 1.21355 * 120.00399 * 354.69556 * 15 13 3 17 17 N 1.34781 * 120.00285 * 174.69875 * 15 13 3 18 18 C 1.39356 * 120.00340 * 179.97438 * 17 15 13 19 19 N 1.31259 * 127.11423 * 359.97438 * 18 17 15 20 20 O 1.21435 * 111.55958 * 180.02562 * 19 18 17 21 21 C 1.33263 * 111.47031 * 359.95057 * 20 19 18 22 22 C 1.35298 * 106.59541 * 0.08417 * 21 20 19 23 23 C 1.50069 * 124.93081 * 179.82266 * 22 21 20 24 24 C 1.53557 * 108.23024 * 343.93357 * 23 22 21 25 25 C 1.53116 * 109.50488 * 49.19837 * 24 23 22 26 26 C 1.50590 * 129.61353 * 180.21597 * 21 20 19 27 27 H 1.08997 * 109.47192 * 300.00252 * 1 2 3 28 28 H 1.09003 * 109.47214 * 60.00291 * 1 2 3 29 29 H 1.09007 * 109.47699 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.47072 * 239.99508 * 2 1 3 31 31 H 1.09002 * 109.47265 * 120.00263 * 2 1 3 32 32 H 1.09000 * 109.47203 * 23.14866 * 4 3 2 33 33 H 1.08999 * 109.46871 * 143.14497 * 4 3 2 34 34 H 0.97005 * 120.00349 * 180.02562 * 8 7 5 35 35 H 0.97003 * 119.99315 * 359.97438 * 17 15 13 36 36 H 1.08998 * 109.71272 * 103.63765 * 23 22 21 37 37 H 1.09000 * 109.71005 * 224.26938 * 23 22 21 38 38 H 1.09004 * 109.47433 * 289.18348 * 24 23 22 39 39 H 1.08994 * 109.45807 * 169.20266 * 24 23 22 40 40 H 1.08994 * 109.42903 * 170.07950 * 25 24 23 41 41 H 1.08996 * 109.38646 * 50.20614 * 25 24 23 42 42 H 1.08998 * 109.69251 * 282.90218 * 26 21 20 43 43 H 1.08998 * 109.69436 * 43.44330 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3668 2.0348 -1.2640 5 6 3.8531 1.9313 -1.4900 6 1 4.4759 1.4293 -0.7646 7 6 4.4179 2.4785 -2.6225 8 7 3.6595 3.0904 -3.5057 9 14 6.2602 2.3496 -2.9032 10 1 6.6531 0.9187 -2.9618 11 1 6.6134 3.0123 -4.1843 12 1 6.9787 3.0148 -1.7867 13 6 2.1472 2.0504 1.1627 14 8 1.9288 1.4864 2.2148 15 6 2.5586 3.4864 1.1563 16 8 2.8699 4.0238 0.1137 17 7 2.5841 4.1853 2.3085 18 6 2.9684 5.5248 2.3026 19 7 3.3311 6.2401 1.2635 20 8 3.6093 7.3788 1.5809 21 6 3.4640 7.5691 2.8918 22 6 3.0487 6.3902 3.4098 23 6 2.7611 6.1434 4.8618 24 6 3.3902 7.2828 5.6766 25 6 2.9909 8.6289 5.0659 26 6 3.6905 8.8112 3.7126 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3635 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.8397 1.5459 -2.0833 33 1 2.0779 3.0850 -1.2215 34 1 4.0567 3.4751 -4.3027 35 1 2.3349 3.7558 3.1418 36 1 1.6836 6.1255 5.0253 37 1 3.1955 5.1910 5.1659 38 1 4.4756 7.1845 5.6609 39 1 3.0358 7.2316 6.7061 40 1 3.2867 9.4341 5.7383 41 1 1.9107 8.6549 4.9222 42 1 4.7591 8.9587 3.8684 43 1 3.2721 9.6746 3.1955 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120949341.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:44:24 Heat of formation + Delta-G solvation = -17.652677 kcal Electronic energy + Delta-G solvation = -27720.017569 eV Core-core repulsion = 23768.335976 eV Total energy + Delta-G solvation = -3951.681593 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -46.00691 -41.94437 -39.78989 -38.58565 -37.60619 -36.39434 -34.75620 -33.26995 -32.11269 -31.82256 -31.11553 -29.11401 -26.98298 -25.35805 -25.01768 -24.31729 -23.76025 -22.20416 -21.21214 -20.11984 -19.29936 -18.84058 -18.61522 -18.20789 -17.76595 -17.03921 -16.92144 -16.68487 -16.06952 -15.82120 -15.50344 -15.14575 -14.75567 -14.71969 -14.55116 -14.36476 -14.28039 -14.09162 -13.72557 -13.54175 -13.22859 -13.21731 -12.86595 -12.79646 -12.73304 -12.41097 -12.17412 -12.07771 -11.81762 -11.80118 -11.74936 -11.64707 -11.49401 -10.75524 -10.29598 -10.06109 -9.95794 -9.66540 -8.20706 -6.30777 0.15801 0.55453 1.08955 1.26281 1.32001 1.36179 1.42375 2.15934 2.19809 2.32227 2.43723 3.09681 3.12938 3.35486 3.68539 3.83970 4.02693 4.04297 4.10957 4.29203 4.30535 4.37275 4.46594 4.52281 4.61757 4.71623 4.86993 4.89585 4.92504 4.96616 5.04703 5.08021 5.20598 5.21326 5.23349 5.34292 5.39584 5.48702 5.50067 5.68833 5.85959 6.03995 6.20090 6.61103 6.73455 6.94547 7.35979 7.41540 8.87494 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.012650 B = 0.004204 C = 0.003386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.897508 B = 6659.340677 C = 8267.965775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.103 3.897 3 N -0.562 5.562 4 C 0.240 3.760 5 C -0.531 4.531 6 H 0.044 0.956 7 C 0.021 3.979 8 N -0.919 5.919 9 Si 0.954 3.046 10 H -0.260 1.260 11 H -0.277 1.277 12 H -0.286 1.286 13 C 0.513 3.487 14 O -0.553 6.553 15 C 0.478 3.522 16 O -0.454 6.454 17 N -0.605 5.605 18 C 0.230 3.770 19 N -0.403 5.403 20 O 0.093 5.907 21 C -0.020 4.020 22 C -0.218 4.218 23 C -0.046 4.046 24 C -0.117 4.117 25 C -0.113 4.113 26 C -0.037 4.037 27 H 0.049 0.951 28 H 0.050 0.950 29 H 0.098 0.902 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.024 0.976 33 H 0.047 0.953 34 H 0.264 0.736 35 H 0.439 0.561 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.067 0.933 39 H 0.097 0.903 40 H 0.109 0.891 41 H 0.070 0.930 42 H 0.111 0.889 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.680 8.684 20.537 22.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.018 4.018 3 N -0.292 5.292 4 C 0.120 3.880 5 C -0.569 4.569 6 H 0.062 0.938 7 C -0.179 4.179 8 N -0.558 5.558 9 Si 0.779 3.221 10 H -0.185 1.185 11 H -0.202 1.202 12 H -0.213 1.213 13 C 0.295 3.705 14 O -0.434 6.434 15 C 0.258 3.742 16 O -0.320 6.320 17 N -0.262 5.262 18 C -0.018 4.018 19 N -0.119 5.119 20 O 0.033 5.967 21 C -0.085 4.085 22 C -0.224 4.224 23 C -0.083 4.083 24 C -0.155 4.155 25 C -0.151 4.151 26 C -0.074 4.074 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.116 0.884 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.042 0.958 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.281 0.719 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.116 0.884 40 H 0.127 0.873 41 H 0.089 0.911 42 H 0.129 0.871 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.459 8.534 18.734 20.875 hybrid contribution 0.762 -0.495 0.039 0.910 sum -2.697 8.039 18.773 20.599 Atomic orbital electron populations 1.22046 0.93821 1.03807 1.01541 1.21743 0.95783 0.80562 1.03700 1.48300 1.59155 1.14500 1.07220 1.19608 0.95120 0.94179 0.79114 1.21381 0.93275 1.36471 1.05803 0.93751 1.25587 1.02204 0.94382 0.95703 1.70010 1.37069 1.37440 1.11283 0.85693 0.80412 0.78842 0.77171 1.18456 1.20195 1.21255 1.19508 0.79701 0.86584 0.84744 1.90629 1.52983 1.69377 1.30441 1.20841 0.80331 0.88900 0.84084 1.91017 1.40553 1.70234 1.30214 1.42224 1.65904 1.06392 1.11697 1.20402 1.02207 0.87434 0.91734 1.74975 1.22586 0.92124 1.22166 1.84804 1.64330 1.22824 1.24736 1.24991 0.99867 1.00089 0.83528 1.20736 1.11818 0.91696 0.98138 1.20155 1.02370 1.00964 0.84849 1.21690 1.01075 0.92935 0.99776 1.21681 1.00823 0.98592 0.93972 1.20601 1.04110 0.89476 0.93261 0.93179 0.93091 0.88350 0.89368 0.89858 0.95809 0.93509 0.92674 0.71938 0.89110 0.90003 0.91405 0.88405 0.87274 0.91143 0.87069 0.87354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.50 10.20 71.98 0.73 -3.76 16 2 C 0.10 3.68 6.08 86.38 0.53 4.21 16 3 N -0.56 -25.26 2.49 -827.84 -2.06 -27.32 16 4 C 0.24 12.94 4.74 85.63 0.41 13.34 16 5 C -0.53 -31.11 8.36 25.60 0.21 -30.90 16 6 H 0.04 2.62 7.81 -2.91 -0.02 2.59 16 7 C 0.02 1.25 5.46 84.65 0.46 1.72 16 8 N -0.92 -56.94 13.29 21.45 0.28 -56.66 16 9 Si 0.95 47.11 29.54 68.60 2.03 49.14 16 10 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 12 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 13 C 0.51 22.60 7.63 87.24 0.67 23.26 16 14 O -0.55 -22.91 16.12 -3.26 -0.05 -22.96 16 15 C 0.48 21.91 7.73 87.24 0.67 22.59 16 16 O -0.45 -25.10 11.18 -3.26 -0.04 -25.14 16 17 N -0.61 -22.33 5.41 -310.03 -1.68 -24.01 16 18 C 0.23 8.46 7.89 133.68 1.05 9.52 16 19 N -0.40 -17.41 10.44 -55.63 -0.58 -17.99 16 20 O 0.09 3.27 11.19 78.05 0.87 4.15 16 21 C -0.02 -0.49 7.38 24.97 0.18 -0.30 16 22 C -0.22 -5.63 6.09 -20.12 -0.12 -5.76 16 23 C -0.05 -0.73 6.30 29.84 0.19 -0.54 16 24 C -0.12 -1.14 5.92 30.82 0.18 -0.96 16 25 C -0.11 -0.91 5.88 30.78 0.18 -0.73 16 26 C -0.04 -0.46 6.31 29.96 0.19 -0.27 16 27 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.10 2.17 8.14 -2.38 -0.02 2.15 16 30 H 0.09 3.08 8.03 -2.38 -0.02 3.06 16 31 H 0.08 2.82 7.52 -2.39 -0.02 2.80 16 32 H 0.02 1.31 8.02 -2.39 -0.02 1.29 16 33 H 0.05 2.84 5.37 -2.44 -0.01 2.83 16 34 H 0.26 15.55 8.31 -92.70 -0.77 14.78 16 35 H 0.44 13.01 8.30 -92.71 -0.77 12.24 16 36 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.07 0.70 8.12 -2.38 -0.02 0.68 16 39 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 40 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 41 H 0.07 0.62 8.12 -2.39 -0.02 0.60 16 42 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -80.11 359.84 4.59 -75.52 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.27 Total: 13.85 kcal Atomic # 6 Polarization: 25.88 SS G_CDS: 5.54 Total: 31.42 kcal Atomic # 7 Polarization: -121.94 SS G_CDS: -4.03 Total: -125.98 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: 0.78 Total: -43.95 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -80.11 4.59 -75.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120949341.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.868 kcal (2) G-P(sol) polarization free energy of solvation -80.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds