Wall clock time and date at job start Tue Mar 31 2020 13:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35323 * 117.00577 * 2 1 4 4 N 1.32530 * 118.93500 * 359.97438 * 3 2 1 5 5 C 1.32064 * 121.10325 * 180.02562 * 4 3 2 6 6 C 1.40123 * 119.01403 * 0.02562 * 5 4 3 7 7 C 1.46788 * 120.95174 * 179.97438 * 6 5 4 8 8 C 1.35122 * 119.99409 * 359.97438 * 7 6 5 9 9 C 1.41844 * 119.99493 * 179.72184 * 8 7 6 10 10 O 1.21733 * 120.00192 * 0.28240 * 9 8 7 11 11 N 1.34782 * 119.99604 * 180.27600 * 9 8 7 12 12 C 1.46499 * 119.99694 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47000 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46940 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00043 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00213 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00298 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99907 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47496 * 89.99791 * 19 17 15 21 21 H 1.48503 * 109.47098 * 209.99926 * 19 17 15 22 22 H 1.48504 * 109.46915 * 329.99781 * 19 17 15 23 23 C 1.41114 * 118.10391 * 0.25113 * 6 5 4 24 24 O 1.35307 * 120.59874 * 179.74883 * 23 6 5 25 25 C 1.42895 * 116.99942 * 179.97438 * 24 23 6 26 26 N 1.32338 * 118.94479 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.46718 * 300.00410 * 1 2 3 28 28 H 1.09000 * 109.46580 * 59.99776 * 1 2 3 29 29 H 1.08993 * 109.47068 * 180.02562 * 1 2 3 30 30 H 1.07995 * 120.49023 * 180.02562 * 5 4 3 31 31 H 1.07992 * 120.00004 * 180.02562 * 7 6 5 32 32 H 1.08002 * 120.00580 * 0.02562 * 8 7 6 33 33 H 0.96991 * 120.00524 * 0.02562 * 11 9 8 34 34 H 1.09009 * 109.47454 * 300.00151 * 12 11 9 35 35 H 1.08998 * 109.47492 * 60.00445 * 12 11 9 36 36 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 37 37 H 1.08998 * 109.46846 * 59.99668 * 13 12 11 38 38 H 1.08995 * 109.47672 * 299.99669 * 14 13 12 39 39 H 1.09007 * 109.47288 * 60.00489 * 14 13 12 40 40 H 0.97000 * 119.99842 * 180.02562 * 18 17 15 41 41 H 1.08999 * 109.47325 * 299.99907 * 25 24 23 42 42 H 1.09004 * 109.47514 * 60.00626 * 25 24 23 43 43 H 1.09004 * 109.47242 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2057 0.0000 4 7 1.3013 2.3036 -0.0005 5 6 1.8560 3.5021 -0.0010 6 6 3.2535 3.6042 -0.0016 7 6 3.9148 4.9147 -0.0028 8 6 3.1743 6.0449 -0.0038 9 6 3.8132 7.3113 0.0010 10 8 5.0286 7.3798 0.0009 11 7 3.0746 8.4387 0.0056 12 6 3.7345 9.7466 0.0100 13 6 2.6764 10.8518 0.0153 14 6 3.3656 12.2177 0.0206 15 6 2.3234 13.3062 0.0251 16 1 1.2744 13.0494 0.0248 17 6 2.7090 14.6299 0.0298 18 7 1.7995 15.5799 0.0343 19 14 4.5234 15.0741 0.0297 20 1 5.0030 15.1971 -1.3704 21 1 4.7166 16.3669 0.7344 22 1 5.2932 14.0115 0.7250 23 6 4.0071 2.4111 -0.0070 24 8 5.3596 2.4509 -0.0129 25 6 6.0454 1.1973 -0.0176 26 7 3.3661 1.2505 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.2416 4.3903 -0.0011 31 1 4.9930 4.9754 -0.0036 32 1 2.0960 5.9842 -0.0034 33 1 2.1063 8.3841 0.0059 34 1 4.3575 9.8363 0.9000 35 1 4.3564 9.8429 -0.8800 36 1 2.0532 10.7622 -0.8744 37 1 2.0548 10.7553 0.9055 38 1 3.9886 12.3070 0.9105 39 1 3.9875 12.3144 -0.8695 40 1 2.0709 16.5111 0.0372 41 1 5.7729 0.6307 0.8729 42 1 5.7652 0.6330 -0.9071 43 1 7.1214 1.3717 -0.0225 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142453944.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:54 Heat of formation + Delta-G solvation = -43.827894 kcal Electronic energy + Delta-G solvation = -25100.750976 eV Core-core repulsion = 21147.934341 eV Total energy + Delta-G solvation = -3952.816635 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.92794 -39.80819 -39.64554 -38.29334 -35.69264 -34.81146 -33.72478 -33.29883 -31.55908 -30.46524 -28.17890 -28.03218 -27.19981 -25.29209 -24.17403 -23.11739 -21.58582 -20.60198 -19.92140 -19.60728 -18.79443 -17.67659 -17.22789 -16.83588 -16.78733 -16.24814 -15.90344 -15.63783 -15.35889 -15.04859 -14.67919 -14.50803 -14.26552 -14.19839 -13.94952 -13.53126 -12.71224 -12.58971 -12.53667 -12.50303 -12.35247 -12.07361 -11.95881 -11.89680 -11.58004 -11.06618 -10.89863 -10.72852 -10.57724 -10.22166 -9.97269 -9.92329 -9.78342 -9.59690 -9.22130 -8.89782 -8.55124 -8.51329 -6.05908 -4.04541 -0.09809 0.56368 1.52507 1.81196 2.42091 3.14783 3.31885 3.39197 3.40344 3.43935 3.45846 3.49451 3.98666 4.12830 4.37348 4.44990 4.55664 4.69721 4.76407 4.78596 4.80906 4.86828 5.05029 5.13174 5.20980 5.28282 5.39353 5.57451 5.68182 5.90533 6.02230 6.04887 6.13761 6.32621 6.38157 6.46449 6.63151 6.73060 6.81107 7.23887 7.37348 7.44452 7.67412 7.77688 8.36347 8.50874 8.97946 9.56461 11.07277 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.024300 B = 0.001817 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.991383 B =15409.492006 C =16525.113444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.287 6.287 3 C 0.543 3.457 4 N -0.584 5.584 5 C 0.231 3.769 6 C -0.229 4.229 7 C 0.009 3.991 8 C -0.218 4.218 9 C 0.543 3.457 10 O -0.552 6.552 11 N -0.722 5.722 12 C 0.114 3.886 13 C -0.113 4.113 14 C -0.012 4.012 15 C -0.522 4.522 16 H 0.072 0.928 17 C 0.066 3.934 18 N -0.903 5.903 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.264 1.264 23 C 0.421 3.579 24 O -0.284 6.284 25 C 0.033 3.967 26 N -0.581 5.581 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.106 0.894 30 H 0.187 0.813 31 H 0.145 0.855 32 H 0.126 0.874 33 H 0.400 0.600 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.019 0.981 39 H 0.014 0.986 40 H 0.263 0.737 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.015 -34.548 -0.095 34.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.188 6.188 3 C 0.242 3.758 4 N -0.317 5.317 5 C 0.068 3.932 6 C -0.236 4.236 7 C -0.013 4.013 8 C -0.239 4.239 9 C 0.333 3.667 10 O -0.433 6.433 11 N -0.372 5.372 12 C -0.009 4.009 13 C -0.151 4.151 14 C -0.050 4.050 15 C -0.560 4.560 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.542 5.542 19 Si 0.707 3.293 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.189 1.189 23 C 0.233 3.767 24 O -0.186 6.186 25 C -0.062 4.062 26 N -0.324 5.324 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.124 0.876 30 H 0.204 0.796 31 H 0.163 0.837 32 H 0.144 0.856 33 H 0.234 0.766 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.037 0.963 39 H 0.033 0.967 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.663 -35.289 -0.088 35.295 hybrid contribution 0.546 0.952 -0.022 1.098 sum 1.209 -34.337 -0.109 34.358 Atomic orbital electron populations 1.23088 0.74873 1.03876 1.03356 1.86055 1.23964 1.22616 1.86134 1.20291 0.84536 0.85095 0.85924 1.68114 1.40394 0.98791 1.24403 1.23283 0.90579 0.94642 0.84727 1.19696 0.94255 0.93076 1.16543 1.21913 1.00802 0.88387 0.90175 1.21954 1.00531 0.92894 1.08502 1.17044 0.87337 0.84863 0.77451 1.90828 1.13784 1.88109 1.50555 1.46097 1.10243 1.06481 1.74339 1.21647 0.96481 0.80848 1.01969 1.21704 0.97099 0.94614 1.01723 1.19509 0.96756 0.92040 0.96674 1.21101 0.94121 0.89710 1.51047 0.91009 1.25032 0.97505 0.96497 0.94484 1.69913 1.33258 0.99994 1.51039 0.86775 0.85996 0.77946 0.78580 1.20255 1.21382 1.18879 1.19881 0.84805 0.87430 0.84548 1.86292 1.12778 1.34144 1.85395 1.23104 0.96513 0.83327 1.03208 1.66969 1.09325 1.28793 1.27271 0.91454 0.91447 0.87599 0.79615 0.83691 0.85586 0.76595 0.91742 0.91742 0.92116 0.92093 0.96294 0.96735 0.92713 0.91515 0.91537 0.87557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.21 10.35 101.05 1.05 1.26 16 2 O -0.29 -2.54 10.55 -17.66 -0.19 -2.72 16 3 C 0.54 5.42 8.48 -91.05 -0.77 4.65 16 4 N -0.58 -5.19 9.17 -14.37 -0.13 -5.32 16 5 C 0.23 1.77 10.68 -16.75 -0.18 1.59 16 6 C -0.23 -2.09 5.91 -104.64 -0.62 -2.71 16 7 C 0.01 0.09 9.21 -37.24 -0.34 -0.26 16 8 C -0.22 -2.14 9.21 -39.31 -0.36 -2.50 16 9 C 0.54 7.58 7.57 -14.88 -0.11 7.47 16 10 O -0.55 -9.95 16.11 5.16 0.08 -9.87 16 11 N -0.72 -9.61 5.55 -63.16 -0.35 -9.96 16 12 C 0.11 1.86 5.67 -4.04 -0.02 1.84 16 13 C -0.11 -2.09 5.27 -26.73 -0.14 -2.23 16 14 C -0.01 -0.28 4.04 -27.88 -0.11 -0.39 16 15 C -0.52 -14.66 9.66 -34.44 -0.33 -14.99 16 16 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 17 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 18 N -0.90 -27.70 13.96 55.43 0.77 -26.93 16 19 Si 0.88 21.74 27.47 -169.99 -4.67 17.07 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 23 C 0.42 4.21 7.55 -16.13 -0.12 4.08 16 24 O -0.28 -2.62 9.80 -17.61 -0.17 -2.79 16 25 C 0.03 0.20 10.41 101.05 1.05 1.25 16 26 N -0.58 -6.10 9.39 -14.40 -0.14 -6.24 16 27 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 28 H 0.07 0.32 8.09 -51.93 -0.42 -0.10 16 29 H 0.11 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.19 0.83 6.29 -52.49 -0.33 0.50 16 31 H 0.15 1.66 7.12 -52.49 -0.37 1.28 16 32 H 0.13 0.77 6.16 -52.49 -0.32 0.45 16 33 H 0.40 4.10 8.43 -40.82 -0.34 3.76 16 34 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 39 H 0.01 0.33 7.57 -51.93 -0.39 -0.06 16 40 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 41 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 42 H 0.07 0.40 8.12 -51.93 -0.42 -0.02 16 43 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 372.54 15.07 5.61 5.61 Total: -1.00 -35.72 372.54 -6.24 -41.95 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -5.94 Total: -1.70 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -1.12 Total: 0.89 kcal Atomic # 7 Polarization: -48.60 SS G_CDS: 0.16 Total: -48.44 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: -0.28 Total: -15.38 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.67 Total: 17.07 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.72 -6.24 -41.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142453944.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.875 kcal (2) G-P(sol) polarization free energy of solvation -35.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds