Wall clock time and date at job start Tue Mar 31 2020 13:47:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35323 * 117.00577 * 2 1 4 4 N 1.32530 * 118.93500 * 359.97438 * 3 2 1 5 5 C 1.32064 * 121.10325 * 180.02562 * 4 3 2 6 6 C 1.40123 * 119.01403 * 0.02562 * 5 4 3 7 7 C 1.46788 * 120.95174 * 179.97438 * 6 5 4 8 8 C 1.35122 * 119.99409 * 359.97438 * 7 6 5 9 9 C 1.41844 * 119.99493 * 179.72184 * 8 7 6 10 10 O 1.21733 * 120.00192 * 0.28240 * 9 8 7 11 11 N 1.34782 * 119.99604 * 180.27600 * 9 8 7 12 12 C 1.46499 * 119.99694 * 180.02562 * 11 9 8 13 13 C 1.53004 * 109.47198 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47000 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.46940 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00043 * 0.02562 * 15 14 13 17 17 C 1.37875 * 120.00213 * 180.02562 * 15 14 13 18 18 N 1.31516 * 120.00298 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 119.99907 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.47496 * 89.99791 * 19 17 15 21 21 H 1.48503 * 109.47098 * 209.99926 * 19 17 15 22 22 H 1.48504 * 109.46915 * 329.99781 * 19 17 15 23 23 C 1.41114 * 118.10391 * 0.25113 * 6 5 4 24 24 O 1.35307 * 120.59874 * 179.74883 * 23 6 5 25 25 C 1.42895 * 116.99942 * 179.97438 * 24 23 6 26 26 N 1.32338 * 118.94479 * 180.02562 * 3 2 1 27 27 H 1.08999 * 109.46718 * 300.00410 * 1 2 3 28 28 H 1.09000 * 109.46580 * 59.99776 * 1 2 3 29 29 H 1.08993 * 109.47068 * 180.02562 * 1 2 3 30 30 H 1.07995 * 120.49023 * 180.02562 * 5 4 3 31 31 H 1.07992 * 120.00004 * 180.02562 * 7 6 5 32 32 H 1.08002 * 120.00580 * 0.02562 * 8 7 6 33 33 H 0.96991 * 120.00524 * 0.02562 * 11 9 8 34 34 H 1.09009 * 109.47454 * 300.00151 * 12 11 9 35 35 H 1.08998 * 109.47492 * 60.00445 * 12 11 9 36 36 H 1.08995 * 109.46638 * 300.00121 * 13 12 11 37 37 H 1.08998 * 109.46846 * 59.99668 * 13 12 11 38 38 H 1.08995 * 109.47672 * 299.99669 * 14 13 12 39 39 H 1.09007 * 109.47288 * 60.00489 * 14 13 12 40 40 H 0.97000 * 119.99842 * 180.02562 * 18 17 15 41 41 H 1.08999 * 109.47325 * 299.99907 * 25 24 23 42 42 H 1.09004 * 109.47514 * 60.00626 * 25 24 23 43 43 H 1.09004 * 109.47242 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2057 0.0000 4 7 1.3013 2.3036 -0.0005 5 6 1.8560 3.5021 -0.0010 6 6 3.2535 3.6042 -0.0016 7 6 3.9148 4.9147 -0.0028 8 6 3.1743 6.0449 -0.0038 9 6 3.8132 7.3113 0.0010 10 8 5.0286 7.3798 0.0009 11 7 3.0746 8.4387 0.0056 12 6 3.7345 9.7466 0.0100 13 6 2.6764 10.8518 0.0153 14 6 3.3656 12.2177 0.0206 15 6 2.3234 13.3062 0.0251 16 1 1.2744 13.0494 0.0248 17 6 2.7090 14.6299 0.0298 18 7 1.7995 15.5799 0.0343 19 14 4.5234 15.0741 0.0297 20 1 5.0030 15.1971 -1.3704 21 1 4.7166 16.3669 0.7344 22 1 5.2932 14.0115 0.7250 23 6 4.0071 2.4111 -0.0070 24 8 5.3596 2.4509 -0.0129 25 6 6.0454 1.1973 -0.0176 26 7 3.3661 1.2505 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.2416 4.3903 -0.0011 31 1 4.9930 4.9754 -0.0036 32 1 2.0960 5.9842 -0.0034 33 1 2.1063 8.3841 0.0059 34 1 4.3575 9.8363 0.9000 35 1 4.3564 9.8429 -0.8800 36 1 2.0532 10.7622 -0.8744 37 1 2.0548 10.7553 0.9055 38 1 3.9886 12.3070 0.9105 39 1 3.9875 12.3144 -0.8695 40 1 2.0709 16.5111 0.0372 41 1 5.7729 0.6307 0.8729 42 1 5.7652 0.6330 -0.9071 43 1 7.1214 1.3717 -0.0225 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142453944.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:53 Heat of formation + Delta-G solvation = -73.652742 kcal Electronic energy + Delta-G solvation = -25102.044278 eV Core-core repulsion = 21147.934341 eV Total energy + Delta-G solvation = -3954.109938 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.58348 -40.83209 -40.34551 -38.91466 -37.05228 -35.66183 -35.10951 -34.41193 -33.29769 -31.31444 -29.13810 -28.62513 -28.29701 -26.15148 -24.98884 -24.39450 -22.66313 -22.18416 -20.73232 -20.34795 -19.66084 -18.89852 -18.40729 -17.85974 -17.63582 -16.87715 -16.82426 -16.65338 -16.39574 -16.18874 -15.89953 -15.37811 -15.23366 -15.09565 -14.78667 -14.78321 -14.65123 -13.79867 -13.63175 -13.24670 -13.04894 -12.95217 -12.88335 -12.71815 -12.67340 -12.58193 -12.28932 -11.89865 -11.76048 -11.56725 -11.41269 -11.30565 -11.25059 -10.96929 -10.74454 -10.59001 -10.06265 -9.26280 -8.27774 -6.31275 -0.81669 -0.08079 0.71264 1.23101 1.37992 1.39726 1.51462 1.84459 2.32426 2.37019 2.37819 2.64736 2.83218 3.08046 3.34675 3.47831 3.68809 3.89467 4.13649 4.20436 4.25280 4.32816 4.34031 4.41420 4.41685 4.44133 4.54669 4.66390 4.70095 4.83995 4.92944 4.94516 5.07324 5.16948 5.28262 5.44517 5.45863 5.56769 5.59268 5.67509 5.73351 6.00921 6.29492 6.67287 6.77107 6.78492 7.32536 7.33666 8.88470 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.024300 B = 0.001817 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.991383 B =15409.492006 C =16525.113444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.301 6.301 3 C 0.533 3.467 4 N -0.585 5.585 5 C 0.242 3.758 6 C -0.238 4.238 7 C 0.020 3.980 8 C -0.218 4.218 9 C 0.541 3.459 10 O -0.600 6.600 11 N -0.712 5.712 12 C 0.126 3.874 13 C -0.100 4.100 14 C -0.014 4.014 15 C -0.529 4.529 16 H 0.039 0.961 17 C 0.004 3.996 18 N -0.950 5.950 19 Si 0.946 3.054 20 H -0.268 1.268 21 H -0.285 1.285 22 H -0.248 1.248 23 C 0.411 3.589 24 O -0.297 6.297 25 C 0.029 3.971 26 N -0.599 5.599 27 H 0.069 0.931 28 H 0.069 0.931 29 H 0.132 0.868 30 H 0.223 0.777 31 H 0.125 0.875 32 H 0.170 0.830 33 H 0.417 0.583 34 H 0.055 0.945 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.066 0.934 38 H 0.020 0.980 39 H 0.019 0.981 40 H 0.266 0.734 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.089 -35.996 -0.119 35.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.202 6.202 3 C 0.232 3.768 4 N -0.318 5.318 5 C 0.079 3.921 6 C -0.244 4.244 7 C -0.001 4.001 8 C -0.238 4.238 9 C 0.333 3.667 10 O -0.484 6.484 11 N -0.363 5.363 12 C 0.001 3.999 13 C -0.138 4.138 14 C -0.052 4.052 15 C -0.567 4.567 16 H 0.057 0.943 17 C -0.193 4.193 18 N -0.591 5.591 19 Si 0.770 3.230 20 H -0.193 1.193 21 H -0.211 1.211 22 H -0.172 1.172 23 C 0.223 3.777 24 O -0.199 6.199 25 C -0.065 4.065 26 N -0.342 5.342 27 H 0.088 0.912 28 H 0.088 0.912 29 H 0.150 0.850 30 H 0.240 0.760 31 H 0.143 0.857 32 H 0.187 0.813 33 H 0.255 0.745 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.038 0.962 39 H 0.037 0.963 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.552 -36.773 -0.112 36.778 hybrid contribution 0.479 1.298 -0.015 1.383 sum 1.031 -35.476 -0.127 35.491 Atomic orbital electron populations 1.23364 0.72972 1.05717 1.03549 1.86053 1.25877 1.22430 1.85832 1.20567 0.84630 0.85803 0.85759 1.68221 1.40080 0.98898 1.24636 1.23874 0.90209 0.95352 0.82670 1.19690 0.94928 0.92187 1.17622 1.21764 0.99975 0.89040 0.89345 1.21931 1.02440 0.90386 1.09044 1.17614 0.86782 0.86036 0.76254 1.90812 1.15997 1.88753 1.52847 1.45895 1.11157 1.05237 1.73991 1.21279 0.95608 0.81730 1.01235 1.21477 0.97249 0.92757 1.02299 1.19486 0.95800 0.93166 0.96752 1.21476 0.93901 0.91278 1.50068 0.94276 1.25979 1.02448 0.96548 0.94318 1.70058 1.35723 1.00513 1.52779 0.85712 0.80134 0.78009 0.79136 1.19300 1.21076 1.17186 1.20128 0.85154 0.87770 0.84606 1.86288 1.12766 1.35616 1.85274 1.23302 0.97551 0.82495 1.03120 1.66965 1.09892 1.29214 1.28141 0.91209 0.91199 0.85032 0.76039 0.85740 0.81256 0.74534 0.92627 0.92544 0.91543 0.91570 0.96171 0.96284 0.92560 0.91593 0.91599 0.85245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.31 10.35 113.37 1.17 1.48 16 2 O -0.30 -5.01 10.55 -86.11 -0.91 -5.92 16 3 C 0.53 10.07 8.48 180.50 1.53 11.60 16 4 N -0.59 -9.18 9.17 -312.31 -2.86 -12.04 16 5 C 0.24 3.04 10.68 85.12 0.91 3.94 16 6 C -0.24 -3.96 5.91 -19.88 -0.12 -4.08 16 7 C 0.02 0.38 9.21 23.79 0.22 0.60 16 8 C -0.22 -3.70 9.21 22.44 0.21 -3.49 16 9 C 0.54 14.17 7.57 85.13 0.64 14.81 16 10 O -0.60 -21.38 16.11 -4.45 -0.07 -21.46 16 11 N -0.71 -17.31 5.55 -471.93 -2.62 -19.93 16 12 C 0.13 3.92 5.67 86.38 0.49 4.41 16 13 C -0.10 -3.52 5.27 30.59 0.16 -3.36 16 14 C -0.01 -0.64 4.04 29.85 0.12 -0.52 16 15 C -0.53 -29.85 9.66 25.60 0.25 -29.61 16 16 H 0.04 2.39 7.99 -2.91 -0.02 2.37 16 17 C 0.00 0.23 5.47 84.65 0.46 0.69 16 18 N -0.95 -59.17 13.96 21.45 0.30 -58.87 16 19 Si 0.95 44.39 27.47 68.60 1.88 46.27 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 22 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 23 C 0.41 7.98 7.55 85.28 0.64 8.62 16 24 O -0.30 -5.45 9.80 -85.94 -0.84 -6.29 16 25 C 0.03 0.35 10.41 113.37 1.18 1.53 16 26 N -0.60 -12.27 9.39 -425.39 -4.00 -16.27 16 27 H 0.07 0.53 8.09 -2.39 -0.02 0.51 16 28 H 0.07 0.53 8.09 -2.39 -0.02 0.51 16 29 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.22 0.93 6.29 -2.91 -0.02 0.91 16 31 H 0.12 2.86 7.12 -2.91 -0.02 2.84 16 32 H 0.17 1.27 6.16 -2.91 -0.02 1.26 16 33 H 0.42 7.21 8.43 -92.72 -0.78 6.43 16 34 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 35 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 39 H 0.02 0.84 7.57 -2.38 -0.02 0.83 16 40 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 41 H 0.07 0.78 8.12 -2.39 -0.02 0.76 16 42 H 0.07 0.78 8.12 -2.38 -0.02 0.76 16 43 H 0.13 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -78.84 372.54 -1.04 -79.88 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: 0.20 Total: 7.98 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: 7.87 Total: 6.64 kcal Atomic # 7 Polarization: -97.93 SS G_CDS: -9.18 Total: -107.11 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -1.82 Total: -33.66 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.88 Total: 46.27 kcal Total: -78.84 -1.04 -79.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142453944.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.230 kcal (2) G-P(sol) polarization free energy of solvation -78.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds