Wall clock time and date at job start Tue Mar 31 2020 13:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45194 * 109.47275 * 2 1 4 4 C 1.34727 * 117.00313 * 180.02562 * 3 2 1 5 5 O 1.21493 * 119.99564 * 359.97438 * 4 3 2 6 6 C 1.47580 * 120.00309 * 180.02562 * 4 3 2 7 7 C 1.41827 * 126.50343 * 180.02562 * 6 4 3 8 8 C 1.34309 * 105.06219 * 180.29755 * 7 6 4 9 9 N 1.35032 * 108.21416 * 358.82300 * 8 7 6 10 10 N 1.28486 * 109.57914 * 1.68200 * 9 8 7 11 11 C 1.47471 * 124.24575 * 182.65809 * 9 8 7 12 12 C 1.53339 * 107.81813 * 65.42946 * 11 9 8 13 13 C 1.52080 * 110.97043 * 277.14127 * 12 11 9 14 14 N 1.45332 * 114.00149 * 67.36759 * 13 12 11 15 15 C 1.34777 * 119.71804 * 112.67338 * 14 13 12 16 16 O 1.21278 * 119.99854 * 359.73240 * 15 14 13 17 17 C 1.50703 * 120.00161 * 179.72547 * 15 14 13 18 18 C 1.50701 * 109.47064 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 15 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 15 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47094 * 90.00289 * 22 20 18 24 24 H 1.48505 * 109.47195 * 210.00171 * 22 20 18 25 25 H 1.48493 * 109.47449 * 330.00136 * 22 20 18 26 26 C 1.47312 * 120.56995 * 292.40065 * 14 13 12 27 27 H 1.09002 * 109.46755 * 299.99742 * 1 2 3 28 28 H 1.08996 * 109.47327 * 59.99902 * 1 2 3 29 29 H 1.08998 * 109.47019 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46442 * 239.99813 * 2 1 3 31 31 H 1.09000 * 109.46967 * 120.00458 * 2 1 3 32 32 H 1.07994 * 127.47422 * 0.29372 * 7 6 4 33 33 H 1.09001 * 109.79232 * 185.00728 * 11 9 8 34 34 H 1.08996 * 109.79149 * 305.85240 * 11 9 8 35 35 H 1.09005 * 109.17171 * 37.64830 * 12 11 9 36 36 H 1.09001 * 109.17216 * 156.90633 * 12 11 9 37 37 H 1.09000 * 108.67016 * 306.20143 * 13 12 11 38 38 H 1.08999 * 108.66268 * 188.53033 * 13 12 11 39 39 H 1.09002 * 109.47152 * 60.00245 * 17 15 14 40 40 H 1.09001 * 109.46980 * 300.00345 * 17 15 14 41 41 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 42 42 H 1.08993 * 109.95489 * 196.52144 * 26 14 13 43 43 H 1.09002 * 109.94922 * 317.78484 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3497 1.5454 -0.0005 5 8 4.0898 0.5819 -0.0005 6 6 3.9138 2.9092 0.0000 7 6 5.2898 3.2530 -0.0010 8 6 5.3140 4.5959 0.0068 9 7 4.0393 5.0411 -0.0142 10 7 3.2335 4.0405 0.0010 11 6 3.6583 6.4646 -0.0701 12 6 4.1276 7.0234 -1.4187 13 6 5.5956 7.4169 -1.3637 14 7 6.5037 6.2925 -1.2117 15 6 7.3375 5.9661 -2.2191 16 8 7.3244 6.6069 -3.2488 17 6 8.2862 4.8052 -2.0661 18 6 9.1014 4.6534 -3.3244 19 1 8.9482 5.3301 -4.1520 20 6 10.0435 3.6511 -3.4187 21 7 10.2304 2.8274 -2.4107 22 14 11.0545 3.4634 -4.9782 23 1 12.2923 4.2760 -4.8665 24 1 11.4152 2.0350 -5.1654 25 1 10.2596 3.9297 -6.1426 26 6 6.5250 5.5099 0.0362 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 6.1350 2.5808 -0.0066 33 1 2.5757 6.5605 0.0125 34 1 4.1407 7.0079 0.7424 35 1 3.9869 6.2650 -2.1889 36 1 3.5327 7.9019 -1.6687 37 1 5.7433 8.0971 -0.5249 38 1 5.8497 7.9455 -2.2824 39 1 7.7176 3.8923 -1.8887 40 1 8.9515 4.9885 -1.2224 41 1 10.8930 2.1221 -2.4772 42 1 7.4378 4.9165 0.0876 43 1 6.4658 6.1782 0.8953 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143194439.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:48 Heat of formation + Delta-G solvation = -38.751040 kcal Electronic energy + Delta-G solvation = -27376.166882 eV Core-core repulsion = 23423.570396 eV Total energy + Delta-G solvation = -3952.596486 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.81084 -40.13041 -39.23384 -36.58644 -36.19481 -34.26039 -32.98425 -32.14156 -31.42016 -30.72367 -29.01575 -26.94348 -25.83205 -24.71149 -23.56275 -22.61486 -21.73674 -20.90761 -19.98450 -18.82868 -17.50927 -17.18564 -16.67356 -16.63917 -16.22535 -15.94344 -15.59144 -15.46789 -14.69284 -14.55116 -14.19823 -14.09553 -13.71813 -13.48122 -13.12668 -13.04647 -12.87604 -12.74091 -12.44705 -12.14943 -12.02677 -11.94590 -11.74700 -11.65284 -11.22210 -11.20358 -10.83577 -10.75593 -10.66875 -10.61310 -10.59955 -9.97130 -9.26234 -9.16582 -9.05153 -8.73135 -8.47805 -8.41276 -6.06454 -4.06290 1.37861 2.05768 2.21729 2.74022 3.22943 3.34961 3.40604 3.44094 3.48661 3.54054 4.22678 4.44772 4.47805 4.55645 4.63322 4.77658 4.80013 4.82946 4.95663 5.10974 5.11643 5.20661 5.27251 5.32015 5.44141 5.57061 5.59653 5.62698 5.65538 5.71195 5.78174 5.95986 6.00145 6.14621 6.34468 6.45434 6.68737 6.88472 7.11347 7.27428 7.68010 7.75266 7.95697 8.01307 8.28518 9.01156 9.05582 9.58803 11.05681 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011030 B = 0.003927 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.909178 B = 7128.295187 C = 9016.337181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.347 6.347 4 C 0.559 3.441 5 O -0.497 6.497 6 C -0.015 4.015 7 C -0.147 4.147 8 C 0.001 3.999 9 N -0.273 5.273 10 N -0.234 5.234 11 C 0.123 3.877 12 C -0.155 4.155 13 C 0.103 3.897 14 N -0.628 5.628 15 C 0.519 3.481 16 O -0.537 6.537 17 C 0.007 3.993 18 C -0.512 4.512 19 H 0.074 0.926 20 C 0.057 3.943 21 N -0.897 5.897 22 Si 0.900 3.100 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.273 1.273 26 C 0.180 3.820 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.173 0.827 33 H 0.108 0.892 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.063 0.937 38 H 0.097 0.903 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.262 0.738 42 H 0.125 0.875 43 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.525 3.514 10.630 20.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.263 6.263 4 C 0.401 3.599 5 O -0.382 6.382 6 C -0.173 4.173 7 C -0.175 4.175 8 C -0.123 4.123 9 N -0.065 5.065 10 N -0.072 5.072 11 C 0.004 3.996 12 C -0.194 4.194 13 C -0.021 4.021 14 N -0.364 5.364 15 C 0.312 3.688 16 O -0.412 6.412 17 C -0.032 4.032 18 C -0.550 4.550 19 H 0.092 0.908 20 C -0.144 4.144 21 N -0.536 5.536 22 Si 0.728 3.272 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 C 0.056 3.944 27 H 0.085 0.915 28 H 0.086 0.914 29 H 0.097 0.903 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.190 0.810 33 H 0.126 0.874 34 H 0.119 0.881 35 H 0.098 0.902 36 H 0.117 0.883 37 H 0.081 0.919 38 H 0.115 0.885 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.072 0.928 42 H 0.143 0.857 43 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -18.330 3.937 10.093 21.293 hybrid contribution 1.186 -0.729 -0.697 1.556 sum -17.145 3.208 9.396 19.812 Atomic orbital electron populations 1.21792 0.92641 1.02812 1.03562 1.23056 0.95321 0.80151 1.02790 1.86625 1.23479 1.32055 1.84124 1.19537 0.80464 0.87272 0.72588 1.90884 1.60542 1.40900 1.45835 1.20716 0.92093 0.89805 1.14639 1.21372 0.96021 0.93670 1.06414 1.21936 0.87834 0.94861 1.07651 1.46006 1.03694 1.06712 1.50042 1.73581 1.22457 0.94056 1.17090 1.22461 1.03123 0.74239 0.99827 1.22291 0.98024 1.02895 0.96221 1.20895 0.87981 0.89187 1.04054 1.48200 1.39430 1.32434 1.16311 1.22225 0.79596 0.85797 0.81207 1.90532 1.69090 1.53423 1.28112 1.19292 0.93173 0.90599 1.00181 1.21127 1.18774 1.14794 1.00309 0.90829 1.24977 0.97127 0.95505 0.96770 1.69936 1.34691 1.18103 1.30896 0.86452 0.80264 0.77076 0.83447 1.20615 1.21206 1.19732 1.20532 0.94564 0.92207 0.87144 0.91511 0.91450 0.90263 0.91030 0.91107 0.80993 0.87358 0.88133 0.90232 0.88322 0.91917 0.88473 0.93067 0.93310 0.92805 0.85658 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 10.29 37.16 0.38 -0.77 16 2 C 0.06 0.65 6.19 37.16 0.23 0.88 16 3 O -0.35 -4.96 10.23 -40.57 -0.42 -5.38 16 4 C 0.56 9.22 7.97 34.54 0.28 9.50 16 5 O -0.50 -9.13 16.72 -19.26 -0.32 -9.45 16 6 C -0.02 -0.26 7.17 -82.61 -0.59 -0.85 16 7 C -0.15 -2.40 10.78 -39.60 -0.43 -2.83 16 8 C 0.00 0.01 6.27 -82.05 -0.51 -0.50 16 9 N -0.27 -3.66 3.37 -56.15 -0.19 -3.85 16 10 N -0.23 -3.61 12.05 33.49 0.40 -3.20 16 11 C 0.12 1.10 6.56 -3.34 -0.02 1.08 16 12 C -0.15 -1.56 5.85 -27.02 -0.16 -1.72 16 13 C 0.10 1.27 5.72 -5.14 -0.03 1.24 16 14 N -0.63 -10.05 2.68 -175.27 -0.47 -10.52 16 15 C 0.52 11.32 7.66 -10.98 -0.08 11.24 16 16 O -0.54 -13.44 14.73 5.56 0.08 -13.35 16 17 C 0.01 0.16 3.82 -29.03 -0.11 0.05 16 18 C -0.51 -14.62 8.92 -34.44 -0.31 -14.93 16 19 H 0.07 2.20 6.75 -52.49 -0.35 1.85 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 21 N -0.90 -25.89 13.29 55.43 0.74 -25.15 16 22 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 26 C 0.18 2.41 5.97 -4.23 -0.03 2.38 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.17 2.83 8.06 -52.49 -0.42 2.41 16 33 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 0.65 7.92 -51.93 -0.41 0.24 16 35 H 0.08 1.08 8.07 -51.93 -0.42 0.66 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.58 8.03 -51.93 -0.42 0.17 16 38 H 0.10 1.42 6.82 -51.93 -0.35 1.06 16 39 H 0.05 1.29 8.06 -51.93 -0.42 0.88 16 40 H 0.05 1.18 7.50 -51.93 -0.39 0.79 16 41 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 42 H 0.13 1.79 6.04 -51.93 -0.31 1.48 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 363.25 15.07 5.47 5.47 Total: -1.00 -35.70 363.25 -7.22 -42.92 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: -6.02 Total: -0.86 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: -1.48 Total: 6.30 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.48 Total: -42.72 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.66 Total: -28.18 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.70 -7.22 -42.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143194439.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.171 kcal (2) G-P(sol) polarization free energy of solvation -35.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds