Wall clock time and date at job start Tue Mar 31 2020 13:06:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.45194 * 109.47275 * 2 1 4 4 C 1.34727 * 117.00313 * 180.02562 * 3 2 1 5 5 O 1.21493 * 119.99564 * 359.97438 * 4 3 2 6 6 C 1.47580 * 120.00309 * 180.02562 * 4 3 2 7 7 C 1.41827 * 126.50343 * 180.02562 * 6 4 3 8 8 C 1.34309 * 105.06219 * 180.29755 * 7 6 4 9 9 N 1.35032 * 108.21416 * 358.82300 * 8 7 6 10 10 N 1.28486 * 109.57914 * 1.68200 * 9 8 7 11 11 C 1.47471 * 124.24575 * 182.65809 * 9 8 7 12 12 C 1.53339 * 107.81813 * 65.42946 * 11 9 8 13 13 C 1.52080 * 110.97043 * 277.14127 * 12 11 9 14 14 N 1.45332 * 114.00149 * 67.36759 * 13 12 11 15 15 C 1.34777 * 119.71804 * 112.67338 * 14 13 12 16 16 O 1.21278 * 119.99854 * 359.73240 * 15 14 13 17 17 C 1.50703 * 120.00161 * 179.72547 * 15 14 13 18 18 C 1.50701 * 109.47064 * 180.02562 * 17 15 14 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 15 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 15 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47094 * 90.00289 * 22 20 18 24 24 H 1.48505 * 109.47195 * 210.00171 * 22 20 18 25 25 H 1.48493 * 109.47449 * 330.00136 * 22 20 18 26 26 C 1.47312 * 120.56995 * 292.40065 * 14 13 12 27 27 H 1.09002 * 109.46755 * 299.99742 * 1 2 3 28 28 H 1.08996 * 109.47327 * 59.99902 * 1 2 3 29 29 H 1.08998 * 109.47019 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46442 * 239.99813 * 2 1 3 31 31 H 1.09000 * 109.46967 * 120.00458 * 2 1 3 32 32 H 1.07994 * 127.47422 * 0.29372 * 7 6 4 33 33 H 1.09001 * 109.79232 * 185.00728 * 11 9 8 34 34 H 1.08996 * 109.79149 * 305.85240 * 11 9 8 35 35 H 1.09005 * 109.17171 * 37.64830 * 12 11 9 36 36 H 1.09001 * 109.17216 * 156.90633 * 12 11 9 37 37 H 1.09000 * 108.67016 * 306.20143 * 13 12 11 38 38 H 1.08999 * 108.66268 * 188.53033 * 13 12 11 39 39 H 1.09002 * 109.47152 * 60.00245 * 17 15 14 40 40 H 1.09001 * 109.46980 * 300.00345 * 17 15 14 41 41 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 42 42 H 1.08993 * 109.95489 * 196.52144 * 26 14 13 43 43 H 1.09002 * 109.94922 * 317.78484 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3497 1.5454 -0.0005 5 8 4.0898 0.5819 -0.0005 6 6 3.9138 2.9092 0.0000 7 6 5.2898 3.2530 -0.0010 8 6 5.3140 4.5959 0.0068 9 7 4.0393 5.0411 -0.0142 10 7 3.2335 4.0405 0.0010 11 6 3.6583 6.4646 -0.0701 12 6 4.1276 7.0234 -1.4187 13 6 5.5956 7.4169 -1.3637 14 7 6.5037 6.2925 -1.2117 15 6 7.3375 5.9661 -2.2191 16 8 7.3244 6.6069 -3.2488 17 6 8.2862 4.8052 -2.0661 18 6 9.1014 4.6534 -3.3244 19 1 8.9482 5.3301 -4.1520 20 6 10.0435 3.6511 -3.4187 21 7 10.2304 2.8274 -2.4107 22 14 11.0545 3.4634 -4.9782 23 1 12.2923 4.2760 -4.8665 24 1 11.4152 2.0350 -5.1654 25 1 10.2596 3.9297 -6.1426 26 6 6.5250 5.5099 0.0362 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 6.1350 2.5808 -0.0066 33 1 2.5757 6.5605 0.0125 34 1 4.1407 7.0079 0.7424 35 1 3.9869 6.2650 -2.1889 36 1 3.5327 7.9019 -1.6687 37 1 5.7433 8.0971 -0.5249 38 1 5.8497 7.9455 -2.2824 39 1 7.7176 3.8923 -1.8887 40 1 8.9515 4.9885 -1.2224 41 1 10.8930 2.1221 -2.4772 42 1 7.4378 4.9165 0.0876 43 1 6.4658 6.1782 0.8953 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143194439.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:06:48 Heat of formation + Delta-G solvation = -62.354091 kcal Electronic energy + Delta-G solvation = -27377.190387 eV Core-core repulsion = 23423.570396 eV Total energy + Delta-G solvation = -3953.619991 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.95724 -41.34347 -40.75947 -37.78180 -37.50910 -35.47054 -35.04388 -33.17125 -32.37478 -31.99900 -30.85094 -28.06726 -27.12890 -26.09051 -25.03599 -23.61671 -22.91622 -22.06640 -21.09536 -20.25265 -18.67244 -18.61695 -18.36063 -17.80886 -17.58289 -17.25594 -17.02129 -16.69851 -16.33117 -16.09232 -15.35581 -15.09896 -14.83146 -14.61439 -14.55500 -14.37701 -14.11996 -13.94812 -13.62020 -13.44211 -13.19159 -13.06851 -12.95984 -12.80627 -12.61459 -12.55193 -12.44106 -12.19265 -12.05115 -11.99922 -11.88056 -11.57711 -11.37825 -10.61899 -10.59367 -10.27468 -10.16966 -9.78464 -8.24577 -6.31537 0.14345 0.85034 1.20024 1.38836 1.40005 1.51892 1.69444 1.80443 1.96669 2.19363 2.43811 3.10838 3.18601 3.41075 3.63864 3.77088 3.82276 3.98891 4.00396 4.05714 4.18589 4.20206 4.32880 4.40941 4.45074 4.49785 4.61769 4.70923 4.76386 4.83958 4.90954 4.94232 5.04703 5.07133 5.10415 5.18598 5.27408 5.33350 5.57148 5.68740 5.79015 6.01413 6.39552 6.49581 6.80264 6.81912 7.32271 7.41882 8.86956 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.011030 B = 0.003927 C = 0.003105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.909178 B = 7128.295187 C = 9016.337181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.049 3.951 3 O -0.349 6.349 4 C 0.559 3.441 5 O -0.528 6.528 6 C -0.040 4.040 7 C -0.173 4.173 8 C 0.004 3.996 9 N -0.261 5.261 10 N -0.233 5.233 11 C 0.114 3.886 12 C -0.144 4.144 13 C 0.094 3.906 14 N -0.615 5.615 15 C 0.520 3.480 16 O -0.578 6.578 17 C 0.012 3.988 18 C -0.539 4.539 19 H 0.052 0.948 20 C 0.013 3.987 21 N -0.919 5.919 22 Si 0.959 3.041 23 H -0.268 1.268 24 H -0.276 1.276 25 H -0.277 1.277 26 C 0.180 3.820 27 H 0.071 0.929 28 H 0.065 0.935 29 H 0.105 0.895 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.157 0.843 33 H 0.134 0.866 34 H 0.142 0.858 35 H 0.038 0.962 36 H 0.140 0.860 37 H 0.112 0.888 38 H 0.073 0.927 39 H 0.036 0.964 40 H 0.049 0.951 41 H 0.267 0.733 42 H 0.110 0.890 43 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.097 5.336 11.922 23.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.024 4.024 3 O -0.264 6.264 4 C 0.403 3.597 5 O -0.415 6.415 6 C -0.195 4.195 7 C -0.202 4.202 8 C -0.120 4.120 9 N -0.054 5.054 10 N -0.072 5.072 11 C -0.003 4.003 12 C -0.183 4.183 13 C -0.028 4.028 14 N -0.349 5.349 15 C 0.311 3.689 16 O -0.457 6.457 17 C -0.027 4.027 18 C -0.577 4.577 19 H 0.071 0.929 20 C -0.186 4.186 21 N -0.559 5.559 22 Si 0.784 3.216 23 H -0.193 1.193 24 H -0.201 1.201 25 H -0.202 1.202 26 C 0.056 3.944 27 H 0.090 0.910 28 H 0.084 0.916 29 H 0.124 0.876 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.175 0.825 33 H 0.152 0.848 34 H 0.160 0.840 35 H 0.057 0.943 36 H 0.158 0.842 37 H 0.130 0.870 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.128 0.872 43 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -19.959 5.775 11.437 23.717 hybrid contribution 1.583 -1.258 -1.052 2.279 sum -18.376 4.517 10.385 21.585 Atomic orbital electron populations 1.21818 0.89858 1.04584 1.03719 1.23439 0.97445 0.78579 1.02914 1.86621 1.22096 1.34215 1.83507 1.19653 0.81032 0.87118 0.71913 1.90852 1.61330 1.41799 1.47549 1.20801 0.92265 0.90349 1.16116 1.21416 0.95918 0.94859 1.07964 1.21964 0.88827 0.94311 1.06910 1.46521 1.02931 1.07967 1.47939 1.73543 1.22592 0.94154 1.16901 1.23024 1.05360 0.71613 1.00294 1.22243 0.96853 1.03424 0.95819 1.21277 0.88435 0.88079 1.05011 1.48024 1.38407 1.32953 1.15502 1.21587 0.80396 0.84928 0.81954 1.90506 1.70673 1.54568 1.29967 1.19063 0.93502 0.91577 0.98555 1.21362 1.20089 1.14923 1.01367 0.92947 1.25724 0.98023 0.95073 0.99760 1.70013 1.35146 1.18368 1.32343 0.85542 0.78954 0.77560 0.79582 1.19323 1.20123 1.20179 1.20804 0.93421 0.92699 0.87442 0.91028 0.91550 0.87644 0.91385 0.90645 0.82502 0.84796 0.84018 0.94276 0.84172 0.86975 0.90899 0.94616 0.93280 0.92437 0.87177 0.83949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.98 10.29 71.98 0.74 -1.24 16 2 C 0.05 1.06 6.19 71.98 0.45 1.50 16 3 O -0.35 -10.08 10.23 -56.37 -0.58 -10.66 16 4 C 0.56 19.15 7.97 70.29 0.56 19.71 16 5 O -0.53 -20.45 16.72 19.86 0.33 -20.12 16 6 C -0.04 -1.35 7.17 42.47 0.30 -1.04 16 7 C -0.17 -5.88 10.78 22.26 0.24 -5.64 16 8 C 0.00 0.13 6.27 41.51 0.26 0.39 16 9 N -0.26 -6.39 3.37 -331.57 -1.12 -7.50 16 10 N -0.23 -6.92 12.05 -47.96 -0.58 -7.50 16 11 C 0.11 1.50 6.56 86.31 0.57 2.06 16 12 C -0.14 -2.40 5.85 30.40 0.18 -2.22 16 13 C 0.09 2.04 5.72 86.29 0.49 2.53 16 14 N -0.62 -18.85 2.68 -826.81 -2.22 -21.06 16 15 C 0.52 23.12 7.66 87.66 0.67 23.79 16 16 O -0.58 -29.83 14.73 -3.02 -0.04 -29.87 16 17 C 0.01 0.63 3.82 29.10 0.11 0.74 16 18 C -0.54 -31.91 8.92 25.60 0.23 -31.69 16 19 H 0.05 3.27 6.75 -2.91 -0.02 3.25 16 20 C 0.01 0.77 5.46 84.66 0.46 1.24 16 21 N -0.92 -54.04 13.29 21.45 0.28 -53.76 16 22 Si 0.96 45.91 29.54 68.60 2.03 47.94 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 24 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 25 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 26 C 0.18 4.45 5.97 85.81 0.51 4.96 16 27 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.16 5.65 8.06 -2.91 -0.02 5.62 16 33 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.14 0.83 7.92 -2.39 -0.02 0.81 16 35 H 0.04 1.00 8.07 -2.38 -0.02 0.98 16 36 H 0.14 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.11 1.42 8.03 -2.39 -0.02 1.41 16 38 H 0.07 2.01 6.82 -2.39 -0.02 2.00 16 39 H 0.04 1.91 8.06 -2.39 -0.02 1.89 16 40 H 0.05 2.46 7.50 -2.39 -0.02 2.44 16 41 H 0.27 14.79 8.31 -92.71 -0.77 14.02 16 42 H 0.11 3.13 6.04 -2.39 -0.01 3.12 16 43 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -82.82 363.25 4.91 -77.90 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: 1.03 Total: 9.53 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: 5.78 Total: 15.10 kcal Atomic # 7 Polarization: -86.20 SS G_CDS: -3.62 Total: -89.82 kcal Atomic # 8 Polarization: -60.36 SS G_CDS: -0.29 Total: -60.65 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 2.03 Total: 47.94 kcal Total: -82.82 4.91 -77.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143194439.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.547 kcal (2) G-P(sol) polarization free energy of solvation -82.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.901 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds