Wall clock time and date at job start Tue Mar 31 2020 13:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45191 * 109.47512 * 2 1 4 4 C 1.34878 * 117.00138 * 180.02562 * 3 2 1 5 5 O 1.21604 * 119.99821 * 359.97438 * 4 3 2 6 6 C 1.46585 * 120.00009 * 180.02562 * 4 3 2 7 7 C 1.36675 * 126.82589 * 179.97438 * 6 4 3 8 8 N 1.33180 * 107.75258 * 179.12542 * 7 6 4 9 9 C 1.31091 * 109.80032 * 359.64913 * 8 7 6 10 10 N 1.34506 * 109.05877 * 1.48372 * 9 8 7 11 11 C 1.46447 * 127.90533 * 176.51426 * 10 9 8 12 12 C 1.52601 * 110.36891 * 28.87886 * 11 10 9 13 13 N 1.47106 * 109.05150 * 277.15423 * 12 11 10 14 14 C 1.34784 * 120.54045 * 238.47188 * 13 12 11 15 15 O 1.21283 * 119.99649 * 359.72501 * 14 13 12 16 16 C 1.50694 * 119.99988 * 179.72383 * 14 13 12 17 17 C 1.50698 * 109.47166 * 179.97438 * 16 14 13 18 18 H 1.08001 * 120.00262 * 0.02562 * 17 16 14 19 19 C 1.37878 * 120.00084 * 179.97438 * 17 16 14 20 20 N 1.31513 * 120.00095 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99895 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.47198 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47470 * 120.00079 * 21 19 17 24 24 H 1.48501 * 109.47057 * 240.00285 * 21 19 17 25 25 C 1.46418 * 118.91976 * 58.20291 * 13 12 11 26 26 C 1.50844 * 125.38924 * 181.79412 * 9 8 7 27 27 H 1.09000 * 109.47726 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47274 * 300.00091 * 1 2 3 29 29 H 1.09005 * 109.46582 * 59.99564 * 1 2 3 30 30 H 1.09003 * 109.46855 * 239.99805 * 2 1 3 31 31 H 1.08997 * 109.46845 * 120.00346 * 2 1 3 32 32 H 1.08001 * 126.12359 * 359.09294 * 7 6 4 33 33 H 1.09003 * 109.33839 * 149.20026 * 11 10 9 34 34 H 1.09000 * 109.34004 * 268.86729 * 11 10 9 35 35 H 1.08998 * 109.48146 * 157.26979 * 12 11 10 36 36 H 1.09001 * 109.43675 * 37.01663 * 12 11 10 37 37 H 1.08998 * 109.47224 * 299.99701 * 16 14 13 38 38 H 1.09002 * 109.47054 * 60.00213 * 16 14 13 39 39 H 0.97003 * 119.99629 * 180.02562 * 20 19 17 40 40 H 1.09000 * 109.68408 * 152.15008 * 25 13 12 41 41 H 1.09000 * 109.68213 * 272.67275 * 25 13 12 42 42 H 1.08999 * 109.48123 * 106.76005 * 26 9 8 43 43 H 1.09005 * 109.47614 * 346.73244 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3688 0.0000 4 6 3.3512 1.5455 -0.0005 5 8 4.0919 0.5811 -0.0005 6 6 3.9116 2.9000 0.0000 7 6 5.2357 3.2388 0.0001 8 7 5.3147 4.5681 -0.0188 9 6 4.1099 5.0844 -0.0382 10 7 3.2052 4.0898 0.0005 11 6 1.7466 4.2024 0.0670 12 6 1.2825 5.4939 -0.6004 13 7 1.4070 6.6019 0.3591 14 6 0.3292 7.3345 0.7030 15 8 -0.7535 7.0855 0.2165 16 6 0.4694 8.4629 1.6919 17 6 -0.8720 9.1169 1.9014 18 1 -1.7394 8.7517 1.3717 19 6 -0.9921 10.1809 2.7700 20 7 0.0640 10.6253 3.4155 21 14 -2.6550 10.9911 3.0301 22 1 -3.6743 10.3092 2.1926 23 1 -3.0385 10.8861 4.4608 24 1 -2.5742 12.4225 2.6431 25 6 2.7197 6.8922 0.9391 26 6 3.7916 6.5575 -0.1015 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 6.0687 2.5516 0.0135 33 1 1.2952 3.3506 -0.4418 34 1 1.4321 4.2074 1.1106 35 1 0.2415 5.3911 -0.9067 36 1 1.9040 5.6947 -1.4731 37 1 0.8350 8.0709 2.6410 38 1 1.1755 9.1983 1.3063 39 1 -0.0206 11.3736 4.0269 40 1 2.7797 7.9484 1.2015 41 1 2.8699 6.2833 1.8307 42 1 3.4228 6.8073 -1.0964 43 1 4.6932 7.1334 0.1072 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143197319.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:10 Heat of formation + Delta-G solvation = -58.322710 kcal Electronic energy + Delta-G solvation = -27393.324205 eV Core-core repulsion = 23439.879028 eV Total energy + Delta-G solvation = -3953.445178 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.68287 -40.38180 -39.34131 -36.96495 -36.34612 -34.39428 -33.04285 -32.16604 -31.89243 -30.46416 -29.02302 -27.83124 -25.33640 -24.61481 -23.64172 -22.66603 -22.01494 -20.89553 -20.19443 -18.95402 -18.04086 -17.23068 -17.06055 -16.75972 -16.55984 -15.84206 -15.82282 -15.29314 -14.89130 -14.49323 -14.35359 -14.18645 -14.01021 -13.88457 -13.27308 -13.19284 -13.07909 -12.68945 -12.34691 -12.32661 -12.20259 -11.98334 -11.92802 -11.79351 -11.65869 -11.28522 -11.09288 -10.89763 -10.81061 -10.73408 -10.33600 -10.03497 -9.93076 -9.31882 -8.86827 -8.75484 -8.52176 -8.43432 -6.13896 -4.13985 0.84016 2.14396 2.38972 2.46296 2.93093 3.24623 3.28300 3.36239 3.43366 3.44940 4.00425 4.21545 4.39876 4.42404 4.57713 4.59357 4.64423 4.80200 4.89123 4.91181 4.92469 5.10719 5.20091 5.24548 5.33277 5.40339 5.42604 5.50202 5.59892 5.63814 5.72886 5.83508 5.90810 6.03070 6.04150 6.24929 6.66880 6.80566 7.04046 7.19527 7.39884 7.68145 7.71511 7.88770 8.21592 8.94479 8.98787 9.51697 10.98264 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016808 B = 0.003150 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.442352 B = 8887.387221 C =10107.047990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.064 3.936 3 O -0.360 6.360 4 C 0.549 3.451 5 O -0.501 6.501 6 C -0.095 4.095 7 C 0.087 3.913 8 N -0.495 5.495 9 C 0.258 3.742 10 N -0.424 5.424 11 C 0.083 3.917 12 C 0.096 3.904 13 N -0.636 5.636 14 C 0.521 3.479 15 O -0.538 6.538 16 C 0.008 3.992 17 C -0.511 4.511 18 H 0.075 0.925 19 C 0.056 3.944 20 N -0.899 5.899 21 Si 0.900 3.100 22 H -0.270 1.270 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.112 3.888 26 C -0.057 4.057 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.186 0.814 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.117 0.883 36 H 0.073 0.927 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.262 0.738 40 H 0.109 0.891 41 H 0.064 0.936 42 H 0.100 0.900 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.342 -17.005 -7.455 19.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.009 4.009 3 O -0.277 6.277 4 C 0.394 3.606 5 O -0.389 6.389 6 C -0.208 4.208 7 C -0.069 4.069 8 N -0.214 5.214 9 C -0.004 4.004 10 N -0.106 5.106 11 C -0.039 4.039 12 C -0.028 4.028 13 N -0.374 5.374 14 C 0.313 3.687 15 O -0.413 6.413 16 C -0.031 4.031 17 C -0.550 4.550 18 H 0.094 0.906 19 C -0.145 4.145 20 N -0.538 5.538 21 Si 0.728 3.272 22 H -0.195 1.195 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.012 4.012 26 C -0.096 4.096 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.203 0.797 33 H 0.132 0.868 34 H 0.114 0.886 35 H 0.135 0.865 36 H 0.091 0.909 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.127 0.873 41 H 0.082 0.918 42 H 0.118 0.882 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 7.451 -16.844 -7.586 19.919 hybrid contribution -1.356 -0.348 0.338 1.441 sum 6.094 -17.192 -7.248 19.628 Atomic orbital electron populations 1.21838 0.92262 1.03216 1.03870 1.23081 0.95517 0.79518 1.02797 1.86602 1.23647 1.32980 1.84492 1.19498 0.80641 0.87552 0.72921 1.90896 1.60396 1.40718 1.46880 1.20076 0.92972 0.84068 1.23701 1.22632 0.93436 0.92154 0.98648 1.70319 1.21357 1.07980 1.21710 1.23582 0.83720 0.92921 1.00200 1.45649 1.08291 1.05356 1.51284 1.22625 0.75328 1.01401 1.04582 1.21670 1.04439 0.84498 0.92199 1.48637 1.09455 1.33475 1.45823 1.22161 0.82009 0.82745 0.81762 1.90543 1.26602 1.69333 1.54845 1.19285 1.00386 0.90622 0.92831 1.21193 0.94166 1.14538 1.25068 0.90648 1.24997 0.97115 0.96827 0.95550 1.69953 1.28922 1.26618 1.28332 0.86387 0.83879 0.79032 0.77911 1.19485 1.20981 1.20953 1.21652 0.80914 1.03815 0.94836 1.20660 1.01438 0.85550 1.01931 0.90014 0.91207 0.91312 0.91018 0.90981 0.79670 0.86782 0.88571 0.86500 0.90857 0.93340 0.93176 0.92851 0.87335 0.91760 0.88168 0.86473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.29 37.16 0.38 -0.59 16 2 C 0.06 0.53 6.20 37.16 0.23 0.76 16 3 O -0.36 -3.87 7.70 -40.98 -0.32 -4.18 16 4 C 0.55 6.83 7.92 34.10 0.27 7.10 16 5 O -0.50 -7.02 16.70 -19.34 -0.32 -7.35 16 6 C -0.10 -1.20 6.88 -82.11 -0.57 -1.77 16 7 C 0.09 1.09 11.65 -17.53 -0.20 0.88 16 8 N -0.50 -6.60 11.20 -10.52 -0.12 -6.72 16 9 C 0.26 3.18 6.97 -155.34 -1.08 2.10 16 10 N -0.42 -5.15 3.11 -110.08 -0.34 -5.49 16 11 C 0.08 0.94 5.89 -4.27 -0.03 0.91 16 12 C 0.10 1.20 5.75 -3.92 -0.02 1.17 16 13 N -0.64 -9.69 2.91 -173.45 -0.50 -10.20 16 14 C 0.52 10.76 7.69 -10.98 -0.08 10.67 16 15 O -0.54 -12.78 14.85 5.56 0.08 -12.70 16 16 C 0.01 0.18 4.01 -29.04 -0.12 0.07 16 17 C -0.51 -14.12 8.92 -34.44 -0.31 -14.42 16 18 H 0.08 2.18 6.75 -52.49 -0.35 1.83 16 19 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.90 -25.29 13.29 55.43 0.74 -24.55 16 21 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 25 C 0.11 1.43 5.67 -4.04 -0.02 1.40 16 26 C -0.06 -0.60 5.56 -27.76 -0.15 -0.75 16 27 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.19 1.90 8.06 -52.49 -0.42 1.48 16 33 H 0.11 1.16 6.16 -51.93 -0.32 0.84 16 34 H 0.10 1.18 8.09 -51.93 -0.42 0.76 16 35 H 0.12 1.58 6.97 -51.93 -0.36 1.22 16 36 H 0.07 0.82 6.47 -51.93 -0.34 0.48 16 37 H 0.05 1.16 8.12 -51.93 -0.42 0.74 16 38 H 0.05 1.18 7.44 -51.93 -0.39 0.80 16 39 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 40 H 0.11 1.43 6.45 -51.93 -0.34 1.10 16 41 H 0.06 0.83 7.92 -51.93 -0.41 0.42 16 42 H 0.10 1.00 6.80 -51.93 -0.35 0.64 16 43 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 355.89 15.07 5.36 5.36 Total: -1.00 -33.04 355.89 -8.04 -41.08 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -5.79 Total: -0.60 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: -1.80 Total: 8.99 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: -0.23 Total: -46.96 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: -0.56 Total: -24.23 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.04 -8.04 -41.08 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143197319.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.243 kcal (2) G-P(sol) polarization free energy of solvation -33.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds