Wall clock time and date at job start Tue Mar 31 2020 13:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45191 * 109.47512 * 2 1 4 4 C 1.34878 * 117.00138 * 180.02562 * 3 2 1 5 5 O 1.21604 * 119.99821 * 359.97438 * 4 3 2 6 6 C 1.46585 * 120.00009 * 180.02562 * 4 3 2 7 7 C 1.36675 * 126.82589 * 179.97438 * 6 4 3 8 8 N 1.33180 * 107.75258 * 179.12542 * 7 6 4 9 9 C 1.31091 * 109.80032 * 359.64913 * 8 7 6 10 10 N 1.34506 * 109.05877 * 1.48372 * 9 8 7 11 11 C 1.46447 * 127.90533 * 176.51426 * 10 9 8 12 12 C 1.52601 * 110.36891 * 28.87886 * 11 10 9 13 13 N 1.47106 * 109.05150 * 277.15423 * 12 11 10 14 14 C 1.34784 * 120.54045 * 238.47188 * 13 12 11 15 15 O 1.21283 * 119.99649 * 359.72501 * 14 13 12 16 16 C 1.50694 * 119.99988 * 179.72383 * 14 13 12 17 17 C 1.50698 * 109.47166 * 179.97438 * 16 14 13 18 18 H 1.08001 * 120.00262 * 0.02562 * 17 16 14 19 19 C 1.37878 * 120.00084 * 179.97438 * 17 16 14 20 20 N 1.31513 * 120.00095 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99895 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.47198 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47470 * 120.00079 * 21 19 17 24 24 H 1.48501 * 109.47057 * 240.00285 * 21 19 17 25 25 C 1.46418 * 118.91976 * 58.20291 * 13 12 11 26 26 C 1.50844 * 125.38924 * 181.79412 * 9 8 7 27 27 H 1.09000 * 109.47726 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47274 * 300.00091 * 1 2 3 29 29 H 1.09005 * 109.46582 * 59.99564 * 1 2 3 30 30 H 1.09003 * 109.46855 * 239.99805 * 2 1 3 31 31 H 1.08997 * 109.46845 * 120.00346 * 2 1 3 32 32 H 1.08001 * 126.12359 * 359.09294 * 7 6 4 33 33 H 1.09003 * 109.33839 * 149.20026 * 11 10 9 34 34 H 1.09000 * 109.34004 * 268.86729 * 11 10 9 35 35 H 1.08998 * 109.48146 * 157.26979 * 12 11 10 36 36 H 1.09001 * 109.43675 * 37.01663 * 12 11 10 37 37 H 1.08998 * 109.47224 * 299.99701 * 16 14 13 38 38 H 1.09002 * 109.47054 * 60.00213 * 16 14 13 39 39 H 0.97003 * 119.99629 * 180.02562 * 20 19 17 40 40 H 1.09000 * 109.68408 * 152.15008 * 25 13 12 41 41 H 1.09000 * 109.68213 * 272.67275 * 25 13 12 42 42 H 1.08999 * 109.48123 * 106.76005 * 26 9 8 43 43 H 1.09005 * 109.47614 * 346.73244 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3688 0.0000 4 6 3.3512 1.5455 -0.0005 5 8 4.0919 0.5811 -0.0005 6 6 3.9116 2.9000 0.0000 7 6 5.2357 3.2388 0.0001 8 7 5.3147 4.5681 -0.0188 9 6 4.1099 5.0844 -0.0382 10 7 3.2052 4.0898 0.0005 11 6 1.7466 4.2024 0.0670 12 6 1.2825 5.4939 -0.6004 13 7 1.4070 6.6019 0.3591 14 6 0.3292 7.3345 0.7030 15 8 -0.7535 7.0855 0.2165 16 6 0.4694 8.4629 1.6919 17 6 -0.8720 9.1169 1.9014 18 1 -1.7394 8.7517 1.3717 19 6 -0.9921 10.1809 2.7700 20 7 0.0640 10.6253 3.4155 21 14 -2.6550 10.9911 3.0301 22 1 -3.6743 10.3092 2.1926 23 1 -3.0385 10.8861 4.4608 24 1 -2.5742 12.4225 2.6431 25 6 2.7197 6.8922 0.9391 26 6 3.7916 6.5575 -0.1015 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 6.0687 2.5516 0.0135 33 1 1.2952 3.3506 -0.4418 34 1 1.4321 4.2074 1.1106 35 1 0.2415 5.3911 -0.9067 36 1 1.9040 5.6947 -1.4731 37 1 0.8350 8.0709 2.6410 38 1 1.1755 9.1983 1.3063 39 1 -0.0206 11.3736 4.0269 40 1 2.7797 7.9484 1.2015 41 1 2.8699 6.2833 1.8307 42 1 3.4228 6.8073 -1.0964 43 1 4.6932 7.1334 0.1072 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143197319.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:08:09 Heat of formation + Delta-G solvation = -77.972485 kcal Electronic energy + Delta-G solvation = -27394.176284 eV Core-core repulsion = 23439.879028 eV Total energy + Delta-G solvation = -3954.297256 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.64998 -41.30965 -40.77938 -37.99078 -37.57858 -35.45465 -35.05132 -33.15750 -32.68075 -31.74217 -30.52628 -29.05168 -26.41691 -25.90454 -25.00101 -23.51632 -23.20295 -21.83815 -21.14838 -20.29944 -19.02277 -18.62910 -18.17973 -17.97051 -17.68486 -17.48879 -16.76466 -16.57123 -16.47824 -15.87701 -15.41063 -15.09714 -15.05375 -14.84714 -14.66475 -14.28720 -14.04906 -13.98027 -13.66659 -13.23747 -13.22961 -13.08324 -13.03229 -12.97374 -12.75368 -12.66828 -12.55508 -12.51750 -12.06853 -12.01297 -11.61609 -11.36220 -11.31423 -10.91599 -10.60712 -10.52892 -9.79631 -9.70337 -8.23777 -6.30270 -0.11901 1.24407 1.40636 1.42492 1.43302 1.55867 1.56841 1.80147 1.96230 1.98632 2.44411 3.07019 3.12305 3.29689 3.39766 3.68754 3.80507 3.89491 3.97852 3.99315 4.02665 4.12919 4.25646 4.31043 4.33044 4.46259 4.55484 4.65657 4.77136 4.78845 4.88696 4.88985 4.96100 5.05684 5.07374 5.28539 5.30022 5.31858 5.46067 5.75554 5.83881 6.02073 6.42724 6.47924 6.72092 6.82829 7.32353 7.42215 8.88047 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.016808 B = 0.003150 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.442352 B = 8887.387221 C =10107.047990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.057 3.943 3 O -0.362 6.362 4 C 0.552 3.448 5 O -0.521 6.521 6 C -0.105 4.105 7 C 0.084 3.916 8 N -0.510 5.510 9 C 0.254 3.746 10 N -0.425 5.425 11 C 0.093 3.907 12 C 0.098 3.902 13 N -0.623 5.623 14 C 0.526 3.474 15 O -0.575 6.575 16 C 0.012 3.988 17 C -0.536 4.536 18 H 0.055 0.945 19 C 0.013 3.987 20 N -0.922 5.922 21 Si 0.959 3.041 22 H -0.275 1.275 23 H -0.275 1.275 24 H -0.274 1.274 25 C 0.110 3.890 26 C -0.046 4.046 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.202 0.798 33 H 0.129 0.871 34 H 0.087 0.913 35 H 0.109 0.891 36 H 0.096 0.904 37 H 0.041 0.959 38 H 0.048 0.952 39 H 0.267 0.733 40 H 0.105 0.895 41 H 0.065 0.935 42 H 0.113 0.887 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.558 -17.517 -7.978 20.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.015 4.015 3 O -0.279 6.279 4 C 0.398 3.602 5 O -0.411 6.411 6 C -0.217 4.217 7 C -0.072 4.072 8 N -0.229 5.229 9 C -0.008 4.008 10 N -0.107 5.107 11 C -0.029 4.029 12 C -0.024 4.024 13 N -0.358 5.358 14 C 0.317 3.683 15 O -0.454 6.454 16 C -0.027 4.027 17 C -0.574 4.574 18 H 0.073 0.927 19 C -0.186 4.186 20 N -0.562 5.562 21 Si 0.784 3.216 22 H -0.199 1.199 23 H -0.201 1.201 24 H -0.199 1.199 25 C -0.013 4.013 26 C -0.085 4.085 27 H 0.121 0.879 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.219 0.781 33 H 0.147 0.853 34 H 0.106 0.894 35 H 0.127 0.873 36 H 0.114 0.886 37 H 0.059 0.941 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.123 0.877 41 H 0.083 0.917 42 H 0.131 0.869 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.706 -17.378 -8.113 20.669 hybrid contribution -1.365 -0.258 0.504 1.478 sum 6.341 -17.636 -7.608 20.227 Atomic orbital electron populations 1.21856 0.90635 1.04554 1.03603 1.23352 0.96729 0.78337 1.03127 1.86592 1.22657 1.34597 1.84028 1.19482 0.81048 0.87250 0.72433 1.90883 1.60946 1.41261 1.47991 1.20193 0.93206 0.84304 1.24019 1.22970 0.94007 0.92192 0.98028 1.70324 1.21843 1.08442 1.22317 1.23868 0.83635 0.93452 0.99811 1.45678 1.08375 1.05314 1.51339 1.22501 0.75149 1.01148 1.04081 1.21803 1.04632 0.83820 0.92160 1.48436 1.08995 1.33023 1.45374 1.21495 0.82672 0.82778 0.81336 1.90523 1.28259 1.70456 1.56175 1.19084 0.98468 0.91690 0.93474 1.21416 0.95287 1.15380 1.25339 0.92660 1.25716 1.00433 0.97251 0.95211 1.70018 1.30460 1.27033 1.28653 0.85481 0.79789 0.78301 0.77991 1.19926 1.20066 1.19922 1.21772 0.80172 1.03701 0.95649 1.20657 1.01323 0.84829 1.01657 0.87890 0.91753 0.91226 0.90489 0.90918 0.78131 0.85299 0.89444 0.87261 0.88619 0.94143 0.93365 0.92452 0.87680 0.91693 0.86898 0.84441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.29 71.98 0.74 -0.88 16 2 C 0.06 0.87 6.20 71.98 0.45 1.31 16 3 O -0.36 -7.31 7.70 -57.91 -0.45 -7.75 16 4 C 0.55 13.11 7.92 70.00 0.55 13.67 16 5 O -0.52 -14.15 16.70 19.50 0.33 -13.82 16 6 C -0.10 -2.49 6.88 39.92 0.27 -2.21 16 7 C 0.08 1.96 11.65 84.12 0.98 2.94 16 8 N -0.51 -12.68 11.20 -187.18 -2.10 -14.77 16 9 C 0.25 5.77 6.97 138.17 0.96 6.73 16 10 N -0.42 -9.60 3.11 -502.19 -1.56 -11.16 16 11 C 0.09 1.97 5.89 86.26 0.51 2.48 16 12 C 0.10 2.31 5.75 86.13 0.50 2.81 16 13 N -0.62 -18.44 2.91 -821.04 -2.39 -20.83 16 14 C 0.53 21.84 7.69 87.65 0.67 22.51 16 15 O -0.58 -27.73 14.85 -3.04 -0.05 -27.77 16 16 C 0.01 0.58 4.01 29.10 0.12 0.69 16 17 C -0.54 -30.10 8.92 25.60 0.23 -29.87 16 18 H 0.06 3.28 6.75 -2.91 -0.02 3.26 16 19 C 0.01 0.71 5.46 84.66 0.46 1.17 16 20 N -0.92 -51.85 13.29 21.45 0.28 -51.57 16 21 Si 0.96 43.84 29.54 68.60 2.03 45.87 16 22 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 25 C 0.11 2.67 5.67 86.43 0.49 3.16 16 26 C -0.05 -0.86 5.56 29.93 0.17 -0.70 16 27 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.20 3.84 8.06 -2.91 -0.02 3.82 16 33 H 0.13 2.40 6.16 -2.39 -0.01 2.39 16 34 H 0.09 2.06 8.09 -2.39 -0.02 2.04 16 35 H 0.11 2.85 6.97 -2.39 -0.02 2.83 16 36 H 0.10 1.88 6.47 -2.39 -0.02 1.87 16 37 H 0.04 1.98 8.12 -2.39 -0.02 1.96 16 38 H 0.05 2.30 7.44 -2.39 -0.02 2.29 16 39 H 0.27 14.11 8.31 -92.71 -0.77 13.33 16 40 H 0.11 2.68 6.45 -2.39 -0.02 2.67 16 41 H 0.06 1.61 7.92 -2.39 -0.02 1.59 16 42 H 0.11 1.90 6.80 -2.39 -0.02 1.89 16 43 H 0.14 2.12 8.14 -2.38 -0.02 2.10 16 Total: -1.00 -70.55 355.89 4.23 -66.32 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 1.04 Total: 11.68 kcal Atomic # 6 Polarization: 16.71 SS G_CDS: 7.10 Total: 23.81 kcal Atomic # 7 Polarization: -92.56 SS G_CDS: -5.76 Total: -98.33 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -0.17 Total: -49.34 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -70.55 4.23 -66.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143197319.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.657 kcal (2) G-P(sol) polarization free energy of solvation -70.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds