Wall clock time and date at job start Tue Mar 31 2020 13:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35509 * 117.00268 * 2 1 4 4 C 1.39424 * 120.47922 * 180.02562 * 3 2 1 5 5 C 1.38194 * 118.46961 * 179.72141 * 4 3 2 6 6 N 1.32478 * 119.24613 * 0.25068 * 5 4 3 7 7 C 1.32288 * 120.90763 * 0.02562 * 6 5 4 8 8 O 1.35458 * 119.16452 * 179.97438 * 7 6 5 9 9 C 1.42904 * 116.99971 * 359.97438 * 8 7 6 10 10 C 1.53043 * 109.45753 * 270.06816 * 9 8 7 11 11 C 1.53192 * 109.30852 * 178.61275 * 10 9 8 12 12 N 1.46930 * 108.77499 * 54.63818 * 11 10 9 13 13 C 1.34772 * 120.63170 * 126.36634 * 12 11 10 14 14 O 1.21286 * 120.00225 * 180.02562 * 13 12 11 15 15 C 1.50710 * 119.99904 * 0.02562 * 13 12 11 16 16 C 1.50703 * 109.46818 * 179.97438 * 15 13 12 17 17 H 1.07994 * 120.00128 * 359.97438 * 16 15 13 18 18 C 1.37879 * 119.99705 * 180.02562 * 16 15 13 19 19 N 1.31516 * 119.99675 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00110 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46884 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47400 * 119.99690 * 20 18 16 23 23 H 1.48500 * 109.47130 * 239.99842 * 20 18 16 24 24 C 1.46926 * 118.73818 * 306.38709 * 12 11 10 25 25 C 1.53043 * 109.45933 * 150.00289 * 9 8 7 26 26 N 1.32305 * 121.67258 * 359.97171 * 7 6 5 27 27 H 1.08991 * 109.47322 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46887 * 300.00385 * 1 2 3 29 29 H 1.09000 * 109.47344 * 59.99703 * 1 2 3 30 30 H 1.08002 * 120.76655 * 0.02562 * 4 3 2 31 31 H 1.08001 * 120.37156 * 180.22969 * 5 4 3 32 32 H 1.08999 * 109.45844 * 30.02687 * 9 8 7 33 33 H 1.08997 * 109.50146 * 298.56495 * 10 9 8 34 34 H 1.08997 * 109.49674 * 58.66730 * 10 9 8 35 35 H 1.09000 * 109.59091 * 294.84860 * 11 10 9 36 36 H 1.08996 * 109.58551 * 174.42472 * 11 10 9 37 37 H 1.08993 * 109.47175 * 299.99912 * 15 13 12 38 38 H 1.09005 * 109.47023 * 59.99942 * 15 13 12 39 39 H 0.97007 * 119.99425 * 180.02562 * 19 18 16 40 40 H 1.08994 * 109.58984 * 293.82305 * 24 12 11 41 41 H 1.08997 * 109.70439 * 173.46234 * 24 12 11 42 42 H 1.08999 * 109.49466 * 301.33593 * 25 9 8 43 43 H 1.08998 * 109.49606 * 61.40329 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4359 1.2919 -0.0005 5 6 4.0198 2.5444 -0.0064 6 7 3.2456 3.6195 -0.0063 7 6 1.9275 3.5076 -0.0001 8 8 1.1697 4.6303 0.0003 9 6 1.8621 5.8804 -0.0054 10 6 2.1165 6.3289 1.4355 11 6 2.8892 7.6517 1.4253 12 7 2.1486 8.6257 0.6120 13 6 1.8195 9.8318 1.1155 14 8 1.2076 10.6270 0.4341 15 6 2.2119 10.1923 2.5252 16 6 1.7291 11.5847 2.8404 17 1 1.1922 12.1519 2.0945 18 6 1.9737 12.1348 4.0808 19 7 2.6279 11.4442 4.9890 20 14 1.3746 13.8603 4.4719 21 1 0.6704 14.4195 3.2902 22 1 0.4423 13.8108 5.6267 23 1 2.5355 14.7227 4.8096 24 6 1.7731 8.2598 -0.7606 25 6 1.0130 6.9302 -0.7259 26 7 1.3305 2.3268 0.0056 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 4.0436 0.3991 -0.0014 31 1 5.0950 2.6457 -0.0107 32 1 2.8143 5.7656 -0.5234 33 1 1.1641 6.4679 1.9469 34 1 2.7015 5.5699 1.9548 35 1 3.8784 7.4938 0.9956 36 1 2.9868 8.0257 2.4444 37 1 1.7603 9.4847 3.2203 38 1 3.2971 10.1540 2.6214 39 1 2.7997 11.8311 5.8618 40 1 2.6713 8.1514 -1.3686 41 1 1.1351 9.0344 -1.1860 42 1 0.8125 6.5991 -1.7448 43 1 0.0707 7.0631 -0.1944 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143198802.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:51 Heat of formation + Delta-G solvation = -52.905017 kcal Electronic energy + Delta-G solvation = -26680.968742 eV Core-core repulsion = 22727.758494 eV Total energy + Delta-G solvation = -3953.210249 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.67415 -39.98923 -39.09905 -38.10342 -36.16100 -33.67304 -33.01333 -32.16415 -31.28543 -31.00007 -28.74242 -27.89750 -25.52768 -24.27853 -23.97918 -23.42756 -22.69749 -20.77683 -19.47088 -18.79826 -18.24292 -17.31786 -16.78836 -16.56449 -15.92305 -15.77460 -15.69433 -15.35456 -15.21858 -14.76795 -14.42535 -14.28272 -14.11215 -14.07503 -13.59616 -12.99897 -12.71026 -12.55670 -12.42576 -12.13613 -12.03679 -11.87541 -11.75785 -11.32078 -11.24826 -11.15728 -10.80278 -10.73271 -10.67084 -10.61023 -10.23199 -9.94683 -9.63284 -9.20874 -9.09106 -8.64572 -8.44502 -8.18822 -6.06187 -4.05398 0.72186 0.79937 2.09244 2.64598 3.33625 3.40613 3.44424 3.47758 3.57874 3.64829 3.73372 4.27053 4.48034 4.48250 4.63841 4.69723 4.82485 4.86996 4.91882 5.03030 5.08741 5.10581 5.25182 5.32262 5.35167 5.41058 5.47597 5.70339 5.73738 5.78819 5.86579 5.99339 6.07050 6.25171 6.29371 6.40197 6.60689 6.98399 6.99239 7.18417 7.30753 7.77214 7.93595 7.97166 8.35525 9.05531 9.17311 9.59731 11.06231 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.025333 B = 0.002364 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.996789 B =11840.592919 C =12106.011737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.298 6.298 3 C 0.398 3.602 4 C -0.288 4.288 5 C 0.213 3.787 6 N -0.585 5.585 7 C 0.544 3.456 8 O -0.282 6.282 9 C 0.098 3.902 10 C -0.149 4.149 11 C 0.118 3.882 12 N -0.632 5.632 13 C 0.519 3.481 14 O -0.543 6.543 15 C 0.007 3.993 16 C -0.507 4.507 17 H 0.075 0.925 18 C 0.054 3.946 19 N -0.901 5.901 20 Si 0.900 3.100 21 H -0.270 1.270 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.117 3.883 25 C -0.130 4.130 26 N -0.584 5.584 27 H 0.101 0.899 28 H 0.065 0.935 29 H 0.064 0.936 30 H 0.155 0.845 31 H 0.180 0.820 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.103 0.897 37 H 0.048 0.952 38 H 0.048 0.952 39 H 0.261 0.739 40 H 0.062 0.938 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.502 -24.779 -10.741 27.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.201 6.201 3 C 0.210 3.790 4 C -0.312 4.312 5 C 0.051 3.949 6 N -0.319 5.319 7 C 0.242 3.758 8 O -0.183 6.183 9 C 0.042 3.958 10 C -0.188 4.188 11 C -0.006 4.006 12 N -0.369 5.369 13 C 0.311 3.689 14 O -0.419 6.419 15 C -0.032 4.032 16 C -0.546 4.546 17 H 0.094 0.906 18 C -0.146 4.146 19 N -0.541 5.541 20 Si 0.728 3.272 21 H -0.195 1.195 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.006 4.006 25 C -0.168 4.168 26 N -0.327 5.327 27 H 0.119 0.881 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.173 0.827 31 H 0.197 0.803 32 H 0.114 0.886 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.121 0.879 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.070 0.930 40 H 0.080 0.920 41 H 0.117 0.883 42 H 0.097 0.903 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 1.431 -23.666 -10.921 26.103 hybrid contribution 0.105 -0.025 0.415 0.429 sum 1.536 -23.691 -10.506 25.961 Atomic orbital electron populations 1.23009 0.76251 1.03488 1.03263 1.86274 1.23810 1.23491 1.86545 1.19767 0.89141 0.83929 0.86120 1.21758 0.92510 1.01318 1.15612 1.22833 1.00350 0.85697 0.86045 1.68144 1.04712 1.34901 1.24105 1.20205 0.84049 0.85659 0.85847 1.86162 1.34334 1.12216 1.85596 1.22629 0.96801 0.78464 0.97935 1.22386 1.02447 0.98211 0.95738 1.21587 0.93959 0.87117 0.97938 1.48464 1.58552 1.16408 1.13450 1.22073 0.76794 0.78944 0.91099 1.90528 1.40514 1.49044 1.61815 1.19262 0.98643 0.98932 0.86401 1.21225 1.35715 0.98731 0.98917 0.90646 1.25007 0.95233 0.98257 0.96133 1.69965 1.41238 1.37447 1.05418 0.86382 0.78476 0.84030 0.78297 1.19478 1.21019 1.21014 1.21358 0.99155 0.95146 0.84968 1.22078 0.99966 0.93775 1.00995 1.67012 1.41606 0.97184 1.26874 0.88059 0.91647 0.91739 0.82744 0.80268 0.88560 0.90456 0.90404 0.91558 0.87872 0.93433 0.93413 0.92962 0.91996 0.88330 0.90286 0.90247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.41 101.05 1.05 1.29 16 2 O -0.30 -2.73 10.49 -18.22 -0.19 -2.92 16 3 C 0.40 4.14 7.53 -16.71 -0.13 4.01 16 4 C -0.29 -2.28 10.12 -39.16 -0.40 -2.68 16 5 C 0.21 1.68 11.29 -17.29 -0.20 1.49 16 6 N -0.58 -6.51 8.65 -14.80 -0.13 -6.63 16 7 C 0.54 7.05 8.45 -91.29 -0.77 6.28 16 8 O -0.28 -3.88 9.84 -18.07 -0.18 -4.06 16 9 C 0.10 1.23 2.33 -26.69 -0.06 1.17 16 10 C -0.15 -1.97 5.70 -26.61 -0.15 -2.12 16 11 C 0.12 1.71 6.34 -3.71 -0.02 1.69 16 12 N -0.63 -11.08 2.97 -172.77 -0.51 -11.59 16 13 C 0.52 11.86 7.69 -10.98 -0.08 11.78 16 14 O -0.54 -14.13 14.88 5.55 0.08 -14.05 16 15 C 0.01 0.17 3.81 -29.03 -0.11 0.06 16 16 C -0.51 -14.73 8.92 -34.44 -0.31 -15.04 16 17 H 0.08 2.29 6.75 -52.49 -0.35 1.94 16 18 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -26.28 13.29 55.43 0.74 -25.54 16 20 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 21 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 C 0.12 1.70 6.43 -3.71 -0.02 1.68 16 25 C -0.13 -1.64 5.73 -26.61 -0.15 -1.79 16 26 N -0.58 -7.34 9.41 -14.79 -0.14 -7.48 16 27 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.49 8.12 -51.93 -0.42 0.07 16 29 H 0.06 0.47 8.12 -51.93 -0.42 0.05 16 30 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 31 H 0.18 0.71 8.06 -52.49 -0.42 0.29 16 32 H 0.10 1.15 6.95 -51.93 -0.36 0.79 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 35 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.10 1.64 5.93 -51.93 -0.31 1.33 16 37 H 0.05 1.22 7.69 -51.93 -0.40 0.82 16 38 H 0.05 1.22 7.94 -51.93 -0.41 0.80 16 39 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.10 1.59 7.01 -51.93 -0.36 1.22 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 LS Contribution 360.53 15.07 5.43 5.43 Total: -1.00 -34.62 360.53 -7.35 -41.97 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -5.98 Total: -1.53 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: -1.45 Total: 9.27 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -0.04 Total: -51.25 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: -0.29 Total: -21.02 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.62 -7.35 -41.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198802.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.938 kcal (2) G-P(sol) polarization free energy of solvation -34.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds