Wall clock time and date at job start Tue Mar 31 2020 13:47:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35509 * 117.00268 * 2 1 4 4 C 1.39424 * 120.47922 * 180.02562 * 3 2 1 5 5 C 1.38194 * 118.46961 * 179.72141 * 4 3 2 6 6 N 1.32478 * 119.24613 * 0.25068 * 5 4 3 7 7 C 1.32288 * 120.90763 * 0.02562 * 6 5 4 8 8 O 1.35458 * 119.16452 * 179.97438 * 7 6 5 9 9 C 1.42904 * 116.99971 * 359.97438 * 8 7 6 10 10 C 1.53043 * 109.45753 * 270.06816 * 9 8 7 11 11 C 1.53192 * 109.30852 * 178.61275 * 10 9 8 12 12 N 1.46930 * 108.77499 * 54.63818 * 11 10 9 13 13 C 1.34772 * 120.63170 * 126.36634 * 12 11 10 14 14 O 1.21286 * 120.00225 * 180.02562 * 13 12 11 15 15 C 1.50710 * 119.99904 * 0.02562 * 13 12 11 16 16 C 1.50703 * 109.46818 * 179.97438 * 15 13 12 17 17 H 1.07994 * 120.00128 * 359.97438 * 16 15 13 18 18 C 1.37879 * 119.99705 * 180.02562 * 16 15 13 19 19 N 1.31516 * 119.99675 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 120.00110 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.46884 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47400 * 119.99690 * 20 18 16 23 23 H 1.48500 * 109.47130 * 239.99842 * 20 18 16 24 24 C 1.46926 * 118.73818 * 306.38709 * 12 11 10 25 25 C 1.53043 * 109.45933 * 150.00289 * 9 8 7 26 26 N 1.32305 * 121.67258 * 359.97171 * 7 6 5 27 27 H 1.08991 * 109.47322 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46887 * 300.00385 * 1 2 3 29 29 H 1.09000 * 109.47344 * 59.99703 * 1 2 3 30 30 H 1.08002 * 120.76655 * 0.02562 * 4 3 2 31 31 H 1.08001 * 120.37156 * 180.22969 * 5 4 3 32 32 H 1.08999 * 109.45844 * 30.02687 * 9 8 7 33 33 H 1.08997 * 109.50146 * 298.56495 * 10 9 8 34 34 H 1.08997 * 109.49674 * 58.66730 * 10 9 8 35 35 H 1.09000 * 109.59091 * 294.84860 * 11 10 9 36 36 H 1.08996 * 109.58551 * 174.42472 * 11 10 9 37 37 H 1.08993 * 109.47175 * 299.99912 * 15 13 12 38 38 H 1.09005 * 109.47023 * 59.99942 * 15 13 12 39 39 H 0.97007 * 119.99425 * 180.02562 * 19 18 16 40 40 H 1.08994 * 109.58984 * 293.82305 * 24 12 11 41 41 H 1.08997 * 109.70439 * 173.46234 * 24 12 11 42 42 H 1.08999 * 109.49466 * 301.33593 * 25 9 8 43 43 H 1.08998 * 109.49606 * 61.40329 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2074 0.0000 4 6 3.4359 1.2919 -0.0005 5 6 4.0198 2.5444 -0.0064 6 7 3.2456 3.6195 -0.0063 7 6 1.9275 3.5076 -0.0001 8 8 1.1697 4.6303 0.0003 9 6 1.8621 5.8804 -0.0054 10 6 2.1165 6.3289 1.4355 11 6 2.8892 7.6517 1.4253 12 7 2.1486 8.6257 0.6120 13 6 1.8195 9.8318 1.1155 14 8 1.2076 10.6270 0.4341 15 6 2.2119 10.1923 2.5252 16 6 1.7291 11.5847 2.8404 17 1 1.1922 12.1519 2.0945 18 6 1.9737 12.1348 4.0808 19 7 2.6279 11.4442 4.9890 20 14 1.3746 13.8603 4.4719 21 1 0.6704 14.4195 3.2902 22 1 0.4423 13.8108 5.6267 23 1 2.5355 14.7227 4.8096 24 6 1.7731 8.2598 -0.7606 25 6 1.0130 6.9302 -0.7259 26 7 1.3305 2.3268 0.0056 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 4.0436 0.3991 -0.0014 31 1 5.0950 2.6457 -0.0107 32 1 2.8143 5.7656 -0.5234 33 1 1.1641 6.4679 1.9469 34 1 2.7015 5.5699 1.9548 35 1 3.8784 7.4938 0.9956 36 1 2.9868 8.0257 2.4444 37 1 1.7603 9.4847 3.2203 38 1 3.2971 10.1540 2.6214 39 1 2.7997 11.8311 5.8618 40 1 2.6713 8.1514 -1.3686 41 1 1.1351 9.0344 -1.1860 42 1 0.8125 6.5991 -1.7448 43 1 0.0707 7.0631 -0.1944 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143198802.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:47:50 Heat of formation + Delta-G solvation = -79.747342 kcal Electronic energy + Delta-G solvation = -26682.132713 eV Core-core repulsion = 22727.758494 eV Total energy + Delta-G solvation = -3954.374219 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.44950 -41.19422 -40.22752 -39.05985 -37.54373 -35.15311 -34.46977 -33.40227 -32.36269 -32.00304 -30.68192 -28.49051 -26.86251 -25.57760 -24.96859 -24.49617 -24.03111 -22.01050 -20.28241 -20.11064 -19.17716 -18.65448 -18.08911 -17.66234 -17.47563 -16.99325 -16.55463 -16.41160 -16.30860 -16.17417 -16.02576 -15.26468 -15.11643 -14.95699 -14.67055 -14.53732 -14.26886 -14.01454 -13.63092 -13.23248 -13.16867 -12.96053 -12.91868 -12.76680 -12.63722 -12.59161 -12.31771 -12.06395 -12.02673 -11.78161 -11.71447 -11.35808 -11.09505 -10.63019 -10.48971 -10.41959 -9.82723 -9.65550 -8.25681 -6.32699 -0.01234 0.09174 1.25498 1.39152 1.39955 1.54813 1.83880 1.99556 2.12085 2.43762 2.69155 3.02357 3.09533 3.41901 3.57445 3.63709 3.88718 3.93945 4.04935 4.12251 4.23711 4.25570 4.34743 4.36032 4.42365 4.47141 4.58005 4.65426 4.72240 4.74449 4.79307 4.89300 4.98123 5.02648 5.05289 5.20168 5.25386 5.61365 5.64729 5.76540 5.86127 6.04305 6.21797 6.49737 6.80562 6.98374 7.32843 7.43973 8.86568 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.025333 B = 0.002364 C = 0.002312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.996789 B =11840.592919 C =12106.011737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.301 6.301 3 C 0.377 3.623 4 C -0.274 4.274 5 C 0.213 3.787 6 N -0.593 5.593 7 C 0.523 3.477 8 O -0.300 6.300 9 C 0.107 3.893 10 C -0.139 4.139 11 C 0.116 3.884 12 N -0.622 5.622 13 C 0.519 3.481 14 O -0.583 6.583 15 C 0.014 3.986 16 C -0.537 4.537 17 H 0.054 0.946 18 C 0.010 3.990 19 N -0.923 5.923 20 Si 0.964 3.036 21 H -0.276 1.276 22 H -0.273 1.273 23 H -0.271 1.271 24 C 0.116 3.884 25 C -0.121 4.121 26 N -0.609 5.609 27 H 0.132 0.868 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.186 0.814 31 H 0.223 0.777 32 H 0.110 0.890 33 H 0.057 0.943 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.039 0.961 38 H 0.044 0.956 39 H 0.267 0.733 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.103 0.897 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.080 -26.466 -11.308 29.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.205 6.205 3 C 0.191 3.809 4 C -0.297 4.297 5 C 0.052 3.948 6 N -0.328 5.328 7 C 0.221 3.779 8 O -0.202 6.202 9 C 0.050 3.950 10 C -0.178 4.178 11 C -0.007 4.007 12 N -0.356 5.356 13 C 0.310 3.690 14 O -0.463 6.463 15 C -0.026 4.026 16 C -0.575 4.575 17 H 0.072 0.928 18 C -0.188 4.188 19 N -0.563 5.563 20 Si 0.788 3.212 21 H -0.200 1.200 22 H -0.198 1.198 23 H -0.196 1.196 24 C -0.006 4.006 25 C -0.159 4.159 26 N -0.352 5.352 27 H 0.150 0.850 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.204 0.796 31 H 0.239 0.761 32 H 0.128 0.872 33 H 0.076 0.924 34 H 0.108 0.892 35 H 0.115 0.885 36 H 0.104 0.896 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.112 0.888 41 H 0.099 0.901 42 H 0.121 0.879 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.040 -25.437 -11.491 28.077 hybrid contribution -0.335 0.312 0.583 0.742 sum 2.705 -25.125 -10.908 27.524 Atomic orbital electron populations 1.23157 0.75383 1.05257 1.02377 1.86277 1.24714 1.22996 1.86513 1.20217 0.90281 0.83672 0.86747 1.22180 0.91619 1.02662 1.13246 1.23604 1.01891 0.84853 0.84493 1.68168 1.03956 1.36300 1.24334 1.20299 0.84789 0.85391 0.87470 1.86107 1.35160 1.12713 1.86200 1.22496 0.97119 0.78294 0.97057 1.22263 1.01378 0.97537 0.96622 1.21763 0.95227 0.86753 0.96913 1.48360 1.57293 1.15031 1.14931 1.21538 0.76881 0.80440 0.90116 1.90501 1.42571 1.50872 1.62389 1.19051 0.98032 0.97244 0.88244 1.21422 1.36506 1.00516 0.99097 0.92799 1.25779 0.95134 1.02128 0.95778 1.70033 1.41502 1.38972 1.05792 0.85417 0.78415 0.79374 0.77964 1.20042 1.19826 1.19612 1.21566 1.00479 0.95477 0.83093 1.21967 0.98797 0.92878 1.02305 1.66912 1.42889 0.97787 1.27642 0.84972 0.92707 0.92444 0.79642 0.76074 0.87219 0.92434 0.89209 0.88458 0.89577 0.94333 0.93847 0.92375 0.88832 0.90083 0.87867 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.41 113.37 1.18 1.61 16 2 O -0.30 -5.12 10.49 -88.11 -0.92 -6.04 16 3 C 0.38 7.30 7.53 84.84 0.64 7.93 16 4 C -0.27 -3.51 10.12 22.55 0.23 -3.29 16 5 C 0.21 2.63 11.29 84.58 0.95 3.58 16 6 N -0.59 -11.79 8.65 -313.72 -2.72 -14.50 16 7 C 0.52 12.99 8.45 180.58 1.53 14.52 16 8 O -0.30 -8.07 9.84 -87.56 -0.86 -8.93 16 9 C 0.11 2.52 2.33 30.62 0.07 2.59 16 10 C -0.14 -3.57 5.70 30.67 0.17 -3.40 16 11 C 0.12 3.28 6.34 86.36 0.55 3.83 16 12 N -0.62 -21.73 2.97 -818.90 -2.43 -24.16 16 13 C 0.52 24.42 7.69 87.66 0.67 25.09 16 14 O -0.58 -31.46 14.88 -3.05 -0.05 -31.50 16 15 C 0.01 0.71 3.81 29.11 0.11 0.82 16 16 C -0.54 -32.13 8.92 25.60 0.23 -31.90 16 17 H 0.05 3.40 6.75 -2.91 -0.02 3.38 16 18 C 0.01 0.61 5.46 84.66 0.46 1.07 16 19 N -0.92 -54.16 13.29 21.45 0.28 -53.87 16 20 Si 0.96 45.76 29.54 68.60 2.03 47.78 16 21 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 22 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 24 C 0.12 3.25 6.43 86.36 0.56 3.81 16 25 C -0.12 -2.93 5.73 30.67 0.18 -2.76 16 26 N -0.61 -14.97 9.41 -426.36 -4.01 -18.98 16 27 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.05 0.83 8.12 -2.38 -0.02 0.81 16 29 H 0.06 0.82 8.12 -2.39 -0.02 0.80 16 30 H 0.19 1.14 8.06 -2.91 -0.02 1.11 16 31 H 0.22 0.68 8.06 -2.91 -0.02 0.66 16 32 H 0.11 2.33 6.95 -2.39 -0.02 2.31 16 33 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 35 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.09 2.77 5.93 -2.39 -0.01 2.75 16 37 H 0.04 2.06 7.69 -2.39 -0.02 2.04 16 38 H 0.04 2.28 7.94 -2.38 -0.02 2.26 16 39 H 0.27 14.64 8.31 -92.70 -0.77 13.87 16 40 H 0.09 2.09 8.14 -2.39 -0.02 2.08 16 41 H 0.08 2.62 7.01 -2.39 -0.02 2.60 16 42 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -77.15 360.53 -0.13 -77.28 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 1.02 Total: 9.42 kcal Atomic # 6 Polarization: 15.98 SS G_CDS: 7.53 Total: 23.51 kcal Atomic # 7 Polarization: -102.64 SS G_CDS: -8.87 Total: -111.51 kcal Atomic # 8 Polarization: -44.64 SS G_CDS: -1.83 Total: -46.47 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -77.15 -0.13 -77.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198802.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.469 kcal (2) G-P(sol) polarization free energy of solvation -77.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds