Wall clock time and date at job start Tue Mar 31 2020 13:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34702 * 117.00537 * 2 1 4 4 O 1.21442 * 119.99698 * 359.97438 * 3 2 1 5 5 C 1.47932 * 120.00346 * 179.97438 * 3 2 1 6 6 N 1.33606 * 120.56838 * 0.02562 * 5 3 2 7 7 C 1.31318 * 120.98194 * 180.02562 * 6 5 3 8 8 N 1.32045 * 122.19656 * 359.97438 * 7 6 5 9 9 C 1.32563 * 121.00920 * 359.97438 * 8 7 6 10 10 N 1.38629 * 120.54838 * 180.02562 * 9 8 7 11 11 C 1.46497 * 119.99683 * 359.97438 * 10 9 8 12 12 H 1.09002 * 109.41793 * 35.14503 * 11 10 9 13 13 C 1.52963 * 109.41416 * 155.00441 * 11 10 9 14 14 C 1.53227 * 109.40733 * 183.70714 * 13 11 10 15 15 C 1.51269 * 108.53442 * 305.37116 * 14 13 11 16 16 C 1.37878 * 120.84795 * 231.32244 * 15 14 13 17 17 N 1.31516 * 120.00070 * 190.01123 * 16 15 14 18 18 Si 1.86802 * 120.00130 * 10.01424 * 16 15 14 19 19 H 1.48498 * 109.46961 * 179.97438 * 18 16 15 20 20 H 1.48501 * 109.46877 * 60.00007 * 18 16 15 21 21 H 1.48496 * 109.46825 * 299.99886 * 18 16 15 22 22 C 1.51265 * 118.30126 * 51.60093 * 15 14 13 23 23 C 1.52963 * 109.41835 * 275.35627 * 11 10 9 24 24 C 1.39610 * 120.56848 * 180.27748 * 5 3 2 25 25 O 1.35689 * 120.98208 * 0.02562 * 24 5 3 26 26 C 1.42895 * 116.99822 * 270.26682 * 25 24 5 27 27 H 1.08997 * 109.46976 * 300.00769 * 1 2 3 28 28 H 1.09007 * 109.46522 * 59.99915 * 1 2 3 29 29 H 1.08988 * 109.47604 * 179.97438 * 1 2 3 30 30 H 1.08006 * 118.90532 * 179.97438 * 7 6 5 31 31 H 0.96996 * 120.00270 * 180.02562 * 10 9 8 32 32 H 1.09000 * 109.48353 * 63.72212 * 13 11 10 33 33 H 1.09004 * 109.49099 * 303.69475 * 13 11 10 34 34 H 1.09000 * 109.62687 * 185.65389 * 14 13 11 35 35 H 1.09003 * 109.78432 * 65.17783 * 14 13 11 36 36 H 0.97003 * 119.99606 * 5.66673 * 17 16 15 37 37 H 1.09000 * 109.62661 * 68.11553 * 22 15 14 38 38 H 1.09004 * 109.62903 * 188.68873 * 22 15 14 39 39 H 1.09000 * 109.47638 * 296.27865 * 23 11 10 40 40 H 1.08998 * 109.47798 * 56.31672 * 23 11 10 41 41 H 1.09000 * 109.47202 * 179.97438 * 26 25 24 42 42 H 1.09004 * 109.47224 * 299.99722 * 26 25 24 43 43 H 1.08999 * 109.47425 * 59.99616 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4022 2.2187 -0.0005 5 6 3.5409 1.2775 0.0006 6 7 4.2796 0.1643 0.0006 7 6 5.5914 0.2235 0.0016 8 7 6.2439 1.3715 0.0021 9 6 5.5936 2.5266 0.0012 10 7 6.2883 3.7263 0.0012 11 6 7.7532 3.7243 0.0029 12 1 8.1152 2.8829 -0.5879 13 6 8.2641 5.0308 -0.6069 14 6 9.7936 4.9900 -0.6901 15 6 10.3422 4.6885 0.6869 16 6 11.3216 5.4811 1.2469 17 7 11.9261 5.0984 2.3504 18 14 11.7901 7.0985 0.4381 19 1 12.8595 7.7567 1.2307 20 1 10.6005 7.9855 0.3798 21 1 12.2821 6.8391 -0.9388 22 6 9.7934 3.4915 1.4313 23 6 8.2599 3.5899 1.4399 24 6 4.1871 2.5151 0.0064 25 8 3.4791 3.6726 0.0122 26 6 3.1353 4.2291 -1.2583 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3634 -1.0275 -0.0005 30 1 6.1556 -0.6975 0.0020 31 1 5.8044 4.5669 0.0009 32 1 7.9563 5.8688 0.0186 33 1 7.8486 5.1521 -1.6073 34 1 10.1676 5.9558 -1.0299 35 1 10.1045 4.2113 -1.3867 36 1 11.7426 4.2228 2.7253 37 1 10.1015 2.5748 0.9284 38 1 10.1672 3.4940 2.4552 39 1 7.9522 4.4619 2.0169 40 1 7.8416 2.6897 1.8901 41 1 2.5718 5.1504 -1.1109 42 1 4.0451 4.4450 -1.8186 43 1 2.5266 3.5163 -1.8145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157055052.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:47 Heat of formation + Delta-G solvation = -73.789464 kcal Electronic energy + Delta-G solvation = -27486.161003 eV Core-core repulsion = 23532.045137 eV Total energy + Delta-G solvation = -3954.115866 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.52075 -40.20562 -38.35447 -37.85453 -36.58109 -35.13387 -33.06481 -31.94825 -30.34301 -29.75866 -28.39652 -27.25050 -26.94458 -24.83790 -23.72465 -22.34400 -21.73496 -20.95237 -19.86799 -18.89172 -18.01811 -17.77686 -17.08039 -16.78537 -16.73348 -16.27412 -15.87082 -15.15134 -14.74873 -14.46626 -14.22433 -13.96237 -13.79906 -13.73385 -13.50255 -13.09861 -12.45265 -12.43433 -12.34935 -12.27063 -11.73934 -11.37461 -11.24891 -11.07824 -11.04804 -10.99100 -10.77745 -10.70119 -10.51087 -10.23633 -10.10197 -9.92695 -9.65411 -9.36463 -9.04305 -8.58084 -8.36080 -7.93485 -6.49061 -4.08095 0.19948 1.03631 2.21380 2.30911 3.11045 3.29048 3.36225 3.37278 3.57248 3.79579 3.88285 4.16080 4.43199 4.55334 4.82227 4.87455 4.90506 4.99713 5.10318 5.17306 5.20952 5.28780 5.46616 5.47273 5.69553 5.90596 6.00395 6.03643 6.31586 6.43013 6.43747 6.62234 6.63621 6.67271 6.84462 6.91406 7.08675 7.21178 7.27628 7.33123 7.36963 7.51833 7.63362 7.98551 8.15548 8.27588 8.80359 9.54163 10.88169 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.028130 B = 0.002959 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.131354 B = 9459.438188 C =10055.560099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.334 6.334 3 C 0.523 3.477 4 O -0.477 6.477 5 C 0.143 3.857 6 N -0.520 5.520 7 C 0.336 3.664 8 N -0.544 5.544 9 C 0.436 3.564 10 N -0.685 5.685 11 C 0.160 3.840 12 H 0.085 0.915 13 C -0.117 4.117 14 C 0.001 3.999 15 C -0.573 4.573 16 C 0.037 3.963 17 N -0.902 5.902 18 Si 1.058 2.942 19 H -0.287 1.287 20 H -0.285 1.285 21 H -0.286 1.286 22 C 0.008 3.992 23 C -0.110 4.110 24 C -0.011 4.011 25 O -0.305 6.305 26 C 0.037 3.963 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.104 0.896 30 H 0.206 0.794 31 H 0.410 0.590 32 H 0.057 0.943 33 H 0.037 0.963 34 H 0.029 0.971 35 H 0.017 0.983 36 H 0.273 0.727 37 H 0.009 0.991 38 H 0.036 0.964 39 H 0.048 0.952 40 H 0.036 0.964 41 H 0.099 0.901 42 H 0.044 0.956 43 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.162 -6.877 -7.313 21.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.249 6.249 3 C 0.364 3.636 4 O -0.362 6.362 5 C 0.002 3.998 6 N -0.243 5.243 7 C 0.047 3.953 8 N -0.270 5.270 9 C 0.186 3.814 10 N -0.314 5.314 11 C 0.058 3.942 12 H 0.103 0.897 13 C -0.156 4.156 14 C -0.038 4.038 15 C -0.591 4.591 16 C -0.169 4.169 17 N -0.537 5.537 18 Si 0.886 3.114 19 H -0.213 1.213 20 H -0.212 1.212 21 H -0.212 1.212 22 C -0.030 4.030 23 C -0.149 4.149 24 C -0.068 4.068 25 O -0.219 6.219 26 C -0.057 4.057 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.122 0.878 30 H 0.222 0.778 31 H 0.247 0.753 32 H 0.076 0.924 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.035 0.965 36 H 0.085 0.915 37 H 0.027 0.973 38 H 0.055 0.945 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.117 0.883 42 H 0.063 0.937 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -17.865 -5.894 -6.964 20.060 hybrid contribution -1.831 -0.336 -0.323 1.890 sum -19.696 -6.231 -7.287 21.906 Atomic orbital electron populations 1.23343 0.76071 1.03971 1.02591 1.86692 1.23136 1.31557 1.83482 1.20589 0.87490 0.81946 0.73581 1.90883 1.65527 1.35872 1.43937 1.20475 0.91473 0.89106 0.98793 1.68448 1.08327 1.29302 1.18230 1.24734 0.86615 0.95350 0.88616 1.68052 1.40687 0.97253 1.21057 1.19103 0.86444 0.88372 0.87505 1.45357 1.08265 1.03618 1.74124 1.21182 0.74701 0.99703 0.98611 0.89664 1.21943 1.00485 0.95548 0.97602 1.19495 0.89926 0.96646 0.97689 1.21015 1.22941 1.13600 1.01581 1.25735 0.92678 1.02944 0.95495 1.70796 1.40572 1.22308 1.20026 0.83685 0.76520 0.75780 0.75376 1.21290 1.21167 1.21246 1.19440 0.89901 0.96090 0.97604 1.21998 0.99775 0.99085 0.94084 1.19687 0.89585 0.87149 1.10335 1.86088 1.71700 1.34781 1.29299 1.23027 0.99528 0.98817 0.84342 0.91705 0.91840 0.87751 0.77781 0.75323 0.92440 0.94455 0.95266 0.96487 0.91507 0.97266 0.94546 0.93305 0.94559 0.88257 0.93749 0.93529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 101.05 1.07 1.33 16 2 O -0.33 -4.01 10.42 -40.50 -0.42 -4.43 16 3 C 0.52 7.23 7.95 34.70 0.28 7.51 16 4 O -0.48 -7.02 13.97 -26.39 -0.37 -7.38 16 5 C 0.14 2.08 6.79 -82.61 -0.56 1.52 16 6 N -0.52 -7.28 10.24 -11.19 -0.11 -7.39 16 7 C 0.34 4.41 12.26 -92.35 -1.13 3.28 16 8 N -0.54 -8.44 9.33 -13.66 -0.13 -8.56 16 9 C 0.44 6.80 7.52 -154.66 -1.16 5.64 16 10 N -0.69 -10.68 5.21 -53.61 -0.28 -10.96 16 11 C 0.16 2.92 2.37 -67.97 -0.16 2.76 16 12 H 0.09 1.65 7.57 -51.93 -0.39 1.26 16 13 C -0.12 -2.18 5.40 -26.63 -0.14 -2.32 16 14 C 0.00 0.02 5.65 -27.49 -0.16 -0.14 16 15 C -0.57 -14.50 5.48 -98.92 -0.54 -15.04 16 16 C 0.04 1.00 5.45 -17.82 -0.10 0.91 16 17 N -0.90 -26.10 13.57 55.43 0.75 -25.34 16 18 Si 1.06 24.07 27.20 -169.99 -4.62 19.45 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 20 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 22 C 0.01 0.19 5.81 -27.26 -0.16 0.03 16 23 C -0.11 -2.28 5.53 -26.41 -0.15 -2.43 16 24 C -0.01 -0.16 5.82 -38.16 -0.22 -0.38 16 25 O -0.31 -4.33 8.31 -40.14 -0.33 -4.66 16 26 C 0.04 0.41 10.54 101.05 1.06 1.47 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.10 0.51 8.14 -51.94 -0.42 0.09 16 30 H 0.21 1.90 8.06 -52.48 -0.42 1.47 16 31 H 0.41 5.75 8.06 -40.82 -0.33 5.42 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.03 0.62 5.16 -51.93 -0.27 0.36 16 35 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.27 7.85 6.65 -40.82 -0.27 7.58 16 37 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.04 0.93 6.18 -51.93 -0.32 0.61 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.05 0.51 7.52 -51.93 -0.39 0.12 16 LS Contribution 355.46 15.07 5.36 5.36 Total: -1.00 -30.52 355.46 -8.07 -38.59 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -5.84 Total: 1.21 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -2.07 Total: 4.13 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: 0.23 Total: -52.26 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -1.12 Total: -16.48 kcal Atomic # 14 Polarization: 24.07 SS G_CDS: -4.62 Total: 19.45 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.52 -8.07 -38.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157055052.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.197 kcal (2) G-P(sol) polarization free energy of solvation -30.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds