Wall clock time and date at job start Tue Mar 31 2020 13:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34702 * 117.00537 * 2 1 4 4 O 1.21442 * 119.99698 * 359.97438 * 3 2 1 5 5 C 1.47932 * 120.00346 * 179.97438 * 3 2 1 6 6 N 1.33606 * 120.56838 * 0.02562 * 5 3 2 7 7 C 1.31318 * 120.98194 * 180.02562 * 6 5 3 8 8 N 1.32045 * 122.19656 * 359.97438 * 7 6 5 9 9 C 1.32563 * 121.00920 * 359.97438 * 8 7 6 10 10 N 1.38629 * 120.54838 * 180.02562 * 9 8 7 11 11 C 1.46497 * 119.99683 * 359.97438 * 10 9 8 12 12 H 1.09002 * 109.41793 * 35.14503 * 11 10 9 13 13 C 1.52963 * 109.41416 * 155.00441 * 11 10 9 14 14 C 1.53227 * 109.40733 * 183.70714 * 13 11 10 15 15 C 1.51269 * 108.53442 * 305.37116 * 14 13 11 16 16 C 1.37878 * 120.84795 * 231.32244 * 15 14 13 17 17 N 1.31516 * 120.00070 * 190.01123 * 16 15 14 18 18 Si 1.86802 * 120.00130 * 10.01424 * 16 15 14 19 19 H 1.48498 * 109.46961 * 179.97438 * 18 16 15 20 20 H 1.48501 * 109.46877 * 60.00007 * 18 16 15 21 21 H 1.48496 * 109.46825 * 299.99886 * 18 16 15 22 22 C 1.51265 * 118.30126 * 51.60093 * 15 14 13 23 23 C 1.52963 * 109.41835 * 275.35627 * 11 10 9 24 24 C 1.39610 * 120.56848 * 180.27748 * 5 3 2 25 25 O 1.35689 * 120.98208 * 0.02562 * 24 5 3 26 26 C 1.42895 * 116.99822 * 270.26682 * 25 24 5 27 27 H 1.08997 * 109.46976 * 300.00769 * 1 2 3 28 28 H 1.09007 * 109.46522 * 59.99915 * 1 2 3 29 29 H 1.08988 * 109.47604 * 179.97438 * 1 2 3 30 30 H 1.08006 * 118.90532 * 179.97438 * 7 6 5 31 31 H 0.96996 * 120.00270 * 180.02562 * 10 9 8 32 32 H 1.09000 * 109.48353 * 63.72212 * 13 11 10 33 33 H 1.09004 * 109.49099 * 303.69475 * 13 11 10 34 34 H 1.09000 * 109.62687 * 185.65389 * 14 13 11 35 35 H 1.09003 * 109.78432 * 65.17783 * 14 13 11 36 36 H 0.97003 * 119.99606 * 5.66673 * 17 16 15 37 37 H 1.09000 * 109.62661 * 68.11553 * 22 15 14 38 38 H 1.09004 * 109.62903 * 188.68873 * 22 15 14 39 39 H 1.09000 * 109.47638 * 296.27865 * 23 11 10 40 40 H 1.08998 * 109.47798 * 56.31672 * 23 11 10 41 41 H 1.09000 * 109.47202 * 179.97438 * 26 25 24 42 42 H 1.09004 * 109.47224 * 299.99722 * 26 25 24 43 43 H 1.08999 * 109.47425 * 59.99616 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4022 2.2187 -0.0005 5 6 3.5409 1.2775 0.0006 6 7 4.2796 0.1643 0.0006 7 6 5.5914 0.2235 0.0016 8 7 6.2439 1.3715 0.0021 9 6 5.5936 2.5266 0.0012 10 7 6.2883 3.7263 0.0012 11 6 7.7532 3.7243 0.0029 12 1 8.1152 2.8829 -0.5879 13 6 8.2641 5.0308 -0.6069 14 6 9.7936 4.9900 -0.6901 15 6 10.3422 4.6885 0.6869 16 6 11.3216 5.4811 1.2469 17 7 11.9261 5.0984 2.3504 18 14 11.7901 7.0985 0.4381 19 1 12.8595 7.7567 1.2307 20 1 10.6005 7.9855 0.3798 21 1 12.2821 6.8391 -0.9388 22 6 9.7934 3.4915 1.4313 23 6 8.2599 3.5899 1.4399 24 6 4.1871 2.5151 0.0064 25 8 3.4791 3.6726 0.0122 26 6 3.1353 4.2291 -1.2583 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5139 -0.8901 29 1 -0.3634 -1.0275 -0.0005 30 1 6.1556 -0.6975 0.0020 31 1 5.8044 4.5669 0.0009 32 1 7.9563 5.8688 0.0186 33 1 7.8486 5.1521 -1.6073 34 1 10.1676 5.9558 -1.0299 35 1 10.1045 4.2113 -1.3867 36 1 11.7426 4.2228 2.7253 37 1 10.1015 2.5748 0.9284 38 1 10.1672 3.4940 2.4552 39 1 7.9522 4.4619 2.0169 40 1 7.8416 2.6897 1.8901 41 1 2.5718 5.1504 -1.1109 42 1 4.0451 4.4450 -1.8186 43 1 2.5266 3.5163 -1.8145 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157055052.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:47 Heat of formation + Delta-G solvation = -91.414446 kcal Electronic energy + Delta-G solvation = -27486.925280 eV Core-core repulsion = 23532.045137 eV Total energy + Delta-G solvation = -3954.880143 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.60288 -41.21541 -39.41170 -39.33040 -37.55493 -36.61288 -34.49760 -33.40927 -31.67248 -31.44470 -29.24225 -28.61042 -27.99869 -25.98567 -24.81843 -24.04173 -23.23119 -22.28514 -21.42314 -20.05569 -19.11338 -18.85523 -18.51303 -18.04826 -17.71509 -17.53052 -16.86294 -16.65757 -15.74412 -15.67882 -15.57026 -15.37021 -15.17056 -14.82194 -14.66205 -14.36338 -14.17031 -13.83992 -13.45827 -13.29519 -13.06397 -12.99294 -12.67625 -12.41880 -12.30698 -12.11280 -12.01774 -11.95396 -11.89083 -11.86093 -11.69832 -11.38327 -11.26419 -10.95905 -10.52515 -10.27701 -10.15892 -9.18853 -8.57360 -6.14913 -0.88199 -0.07634 1.23906 1.27683 1.53862 1.59442 1.78347 1.93228 2.27715 2.58352 2.70381 2.90066 3.08891 3.17063 3.46697 3.83194 3.94742 4.05257 4.13318 4.25480 4.30710 4.32071 4.37537 4.44608 4.62840 4.67923 4.69083 4.82650 4.88856 4.93197 4.96942 5.07736 5.11773 5.18293 5.21897 5.28120 5.41869 5.50479 5.71236 5.80845 6.04418 6.17654 6.27100 6.31906 6.52380 6.74793 7.04995 7.55210 8.79378 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.028130 B = 0.002959 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 995.131354 B = 9459.438188 C =10055.560099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.341 6.341 3 C 0.523 3.477 4 O -0.491 6.491 5 C 0.132 3.868 6 N -0.520 5.520 7 C 0.337 3.663 8 N -0.564 5.564 9 C 0.427 3.573 10 N -0.682 5.682 11 C 0.178 3.822 12 H 0.077 0.923 13 C -0.110 4.110 14 C -0.006 4.006 15 C -0.576 4.576 16 C -0.018 4.018 17 N -0.943 5.943 18 Si 1.094 2.906 19 H -0.300 1.300 20 H -0.263 1.263 21 H -0.265 1.265 22 C 0.004 3.996 23 C -0.097 4.097 24 C -0.009 4.009 25 O -0.319 6.319 26 C 0.034 3.966 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.135 0.865 30 H 0.240 0.760 31 H 0.419 0.581 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.038 0.962 35 H 0.019 0.981 36 H 0.258 0.742 37 H 0.001 0.999 38 H 0.008 0.992 39 H 0.037 0.963 40 H 0.036 0.964 41 H 0.119 0.881 42 H 0.055 0.945 43 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.254 -6.731 -9.238 24.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.256 6.256 3 C 0.365 3.635 4 O -0.377 6.377 5 C -0.010 4.010 6 N -0.243 5.243 7 C 0.048 3.952 8 N -0.291 5.291 9 C 0.177 3.823 10 N -0.313 5.313 11 C 0.074 3.926 12 H 0.095 0.905 13 C -0.148 4.148 14 C -0.044 4.044 15 C -0.595 4.595 16 C -0.216 4.216 17 N -0.581 5.581 18 Si 0.917 3.083 19 H -0.227 1.227 20 H -0.188 1.188 21 H -0.190 1.190 22 C -0.034 4.034 23 C -0.137 4.137 24 C -0.066 4.066 25 O -0.232 6.232 26 C -0.060 4.060 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.154 0.846 30 H 0.256 0.744 31 H 0.257 0.743 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.056 0.944 35 H 0.037 0.963 36 H 0.069 0.931 37 H 0.020 0.980 38 H 0.026 0.974 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.137 0.863 42 H 0.073 0.927 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -20.017 -5.782 -8.916 22.663 hybrid contribution -1.304 -0.549 0.276 1.442 sum -21.321 -6.331 -8.641 23.861 Atomic orbital electron populations 1.23704 0.73702 1.06213 1.02997 1.86672 1.25457 1.30537 1.82924 1.20503 0.87254 0.82330 0.73408 1.90866 1.65731 1.36375 1.44757 1.20719 0.92220 0.89246 0.98788 1.68520 1.08654 1.29126 1.17991 1.25418 0.86565 0.95827 0.87352 1.68088 1.41488 0.97898 1.21593 1.19204 0.86828 0.88341 0.87902 1.44978 1.06932 1.04226 1.75126 1.20746 0.76318 0.99386 0.96171 0.90524 1.21795 0.97919 0.95493 0.99625 1.19535 0.92385 0.97115 0.95350 1.21591 1.21847 1.12976 1.03096 1.27012 0.93054 1.06000 0.95543 1.70908 1.42935 1.22044 1.22222 0.83230 0.76793 0.72877 0.75369 1.22681 1.18770 1.19002 1.19425 0.92455 0.95672 0.95830 1.21792 0.97076 0.98571 0.96233 1.19674 0.89295 0.87639 1.09971 1.86056 1.71586 1.34508 1.31080 1.23219 1.00248 0.99291 0.83218 0.91551 0.91205 0.84648 0.74436 0.74293 0.92353 0.91075 0.94358 0.96269 0.93108 0.98025 0.97369 0.94373 0.94510 0.86254 0.92667 0.93895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.55 16 2 O -0.34 -7.62 10.42 -56.12 -0.58 -8.20 16 3 C 0.52 13.79 7.95 70.39 0.56 14.35 16 4 O -0.49 -13.81 13.97 26.88 0.38 -13.43 16 5 C 0.13 3.67 6.79 41.78 0.28 3.95 16 6 N -0.52 -13.71 10.24 -189.30 -1.94 -15.65 16 7 C 0.34 8.22 12.26 180.95 2.22 10.44 16 8 N -0.56 -16.67 9.33 -197.12 -1.84 -18.51 16 9 C 0.43 12.66 7.52 133.52 1.00 13.66 16 10 N -0.68 -19.96 5.21 -323.53 -1.68 -21.65 16 11 C 0.18 6.18 2.37 44.97 0.11 6.29 16 12 H 0.08 2.85 7.57 -2.39 -0.02 2.83 16 13 C -0.11 -3.78 5.40 30.66 0.17 -3.62 16 14 C -0.01 -0.23 5.65 30.10 0.17 -0.06 16 15 C -0.58 -29.20 5.48 -16.17 -0.09 -29.29 16 16 C -0.02 -0.97 5.45 84.65 0.46 -0.51 16 17 N -0.94 -56.54 13.57 21.45 0.29 -56.25 16 18 Si 1.09 47.84 27.20 68.60 1.87 49.71 16 19 H -0.30 -13.67 7.11 99.48 0.71 -12.97 16 20 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 21 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 22 C 0.00 0.22 5.81 30.25 0.18 0.39 16 23 C -0.10 -4.03 5.53 30.80 0.17 -3.86 16 24 C -0.01 -0.26 5.82 23.19 0.14 -0.12 16 25 O -0.32 -8.51 8.31 -69.65 -0.58 -9.08 16 26 C 0.03 0.67 10.54 113.37 1.19 1.86 16 27 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 29 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.24 3.84 8.06 -2.91 -0.02 3.81 16 31 H 0.42 10.77 8.06 -92.71 -0.75 10.02 16 32 H 0.06 2.01 8.14 -2.39 -0.02 2.00 16 33 H 0.07 2.01 8.14 -2.38 -0.02 2.00 16 34 H 0.04 1.53 5.16 -2.39 -0.01 1.51 16 35 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.26 15.68 6.65 -92.71 -0.62 15.07 16 37 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 38 H 0.01 0.42 6.18 -2.38 -0.01 0.41 16 39 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 43 H 0.04 0.87 7.52 -2.39 -0.02 0.85 16 Total: -1.00 -66.97 355.46 4.12 -62.85 By element: Atomic # 1 Polarization: 14.72 SS G_CDS: 0.46 Total: 15.17 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 7.75 Total: 15.05 kcal Atomic # 7 Polarization: -106.88 SS G_CDS: -5.17 Total: -112.05 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.79 Total: -30.72 kcal Atomic # 14 Polarization: 47.84 SS G_CDS: 1.87 Total: 49.71 kcal Total: -66.97 4.12 -62.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157055052.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.565 kcal (2) G-P(sol) polarization free energy of solvation -66.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds