Wall clock time and date at job start Tue Mar 31 2020 13:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45206 * 109.47250 * 2 1 4 4 C 1.34227 * 117.00193 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99924 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99935 * 180.02562 * 4 3 2 7 7 N 1.46897 * 109.46990 * 177.07944 * 6 4 3 8 8 C 1.46897 * 110.99868 * 160.09216 * 7 6 4 9 9 C 1.50699 * 109.47592 * 287.94822 * 8 7 6 10 10 H 1.08003 * 119.99223 * 3.80252 * 9 8 7 11 11 C 1.37870 * 120.00288 * 183.79998 * 9 8 7 12 12 N 1.31519 * 120.00087 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 120.00219 * 0.02562 * 11 9 8 14 14 H 1.48505 * 109.46814 * 89.99794 * 13 11 9 15 15 H 1.48493 * 109.47100 * 210.00046 * 13 11 9 16 16 H 1.48499 * 109.46905 * 330.00018 * 13 11 9 17 17 C 1.38267 * 111.00170 * 284.04737 * 7 6 4 18 18 N 1.32429 * 119.82630 * 307.43828 * 17 7 6 19 19 C 1.31841 * 121.77821 * 180.02562 * 18 17 7 20 20 C 1.50697 * 119.39281 * 179.97438 * 19 18 17 21 21 C 1.38373 * 121.21877 * 0.25010 * 19 18 17 22 22 C 1.38341 * 119.50806 * 359.49595 * 21 19 18 23 23 C 1.39976 * 118.36223 * 0.49122 * 22 21 19 24 24 C 1.47429 * 120.60726 * 179.72719 * 23 22 21 25 25 N 1.34774 * 120.00131 * 5.70903 * 24 23 22 26 26 O 1.21604 * 120.00159 * 185.70537 * 24 23 22 27 27 H 1.08998 * 109.47207 * 60.00310 * 1 2 3 28 28 H 1.09004 * 109.46951 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46966 * 300.00004 * 1 2 3 30 30 H 1.09007 * 109.47279 * 240.00407 * 2 1 3 31 31 H 1.08998 * 109.47462 * 120.00431 * 2 1 3 32 32 H 1.08999 * 109.46950 * 57.08136 * 6 4 3 33 33 H 1.08997 * 109.46943 * 297.07790 * 6 4 3 34 34 H 1.08998 * 109.47364 * 47.95203 * 8 7 6 35 35 H 1.09008 * 109.47071 * 167.94763 * 8 7 6 36 36 H 0.96997 * 120.00293 * 179.97438 * 12 11 9 37 37 H 1.09003 * 109.47236 * 89.99815 * 20 19 18 38 38 H 1.09000 * 109.47337 * 209.99531 * 20 19 18 39 39 H 1.09001 * 109.47377 * 330.00012 * 20 19 18 40 40 H 1.08005 * 120.25122 * 179.72327 * 21 19 18 41 41 H 1.07996 * 120.81787 * 180.24557 * 22 21 19 42 42 H 0.97003 * 119.99754 * 0.02562 * 25 24 23 43 43 H 0.96997 * 120.00666 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 7 5.3860 2.8613 0.0698 8 6 6.0008 4.1126 -0.3927 9 6 5.8486 4.2246 -1.8878 10 1 5.2923 3.4753 -2.4315 11 6 6.4194 5.2834 -2.5615 12 7 6.2862 5.3814 -3.8663 13 14 7.3821 6.5790 -1.6212 14 1 8.8102 6.1781 -1.5477 15 1 7.2696 7.8840 -2.3207 16 1 6.8319 6.7045 -0.2476 17 6 5.8054 2.5464 1.3492 18 7 5.3767 3.2619 2.3777 19 6 5.7522 2.9959 3.6132 20 6 5.2316 3.8457 4.7436 21 6 6.6200 1.9544 3.8906 22 6 7.0957 1.1698 2.8553 23 6 6.6847 1.4691 1.5511 24 6 7.1661 0.6690 0.4102 25 7 7.9161 -0.4298 0.6263 26 8 6.8863 1.0003 -0.7259 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.5439 3.4862 0.8632 33 1 3.6268 3.4525 -0.9145 34 1 5.5084 4.9585 0.0870 35 1 7.0598 4.1144 -0.1342 36 1 6.6874 6.1265 -4.3402 37 1 4.3043 3.4167 5.1234 38 1 5.9710 3.8787 5.5438 39 1 5.0427 4.8562 4.3814 40 1 6.9209 1.7532 4.9082 41 1 7.7708 0.3492 3.0481 42 1 8.1388 -0.6943 1.5325 43 1 8.2325 -0.9564 -0.1243 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157161324.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:10 Heat of formation + Delta-G solvation = -56.511503 kcal Electronic energy + Delta-G solvation = -28337.516933 eV Core-core repulsion = 24384.150296 eV Total energy + Delta-G solvation = -3953.366638 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.72353 -39.78045 -38.20043 -36.97083 -35.74833 -33.52724 -32.63240 -32.22353 -31.70503 -31.18088 -28.57819 -28.00204 -26.31486 -23.25603 -22.85929 -22.69691 -21.19049 -20.40088 -20.11174 -17.73971 -17.31212 -17.01609 -16.85489 -16.28967 -15.96113 -15.47868 -15.15241 -15.05551 -14.46495 -14.22814 -14.13381 -13.74379 -13.67624 -13.56296 -13.10880 -12.84553 -12.70747 -12.43666 -12.34943 -12.16431 -12.14478 -11.91476 -11.69479 -11.45549 -11.27336 -10.78941 -10.63864 -10.27009 -10.07605 -9.82787 -9.69705 -9.58787 -9.35545 -9.17356 -9.12118 -8.55641 -8.52097 -7.63883 -5.99163 -3.96069 0.92875 1.30514 2.80329 2.96155 3.32552 3.37237 3.39406 3.41702 3.86013 4.14597 4.17775 4.46286 4.54591 4.69877 4.98259 4.99015 5.01455 5.17387 5.21702 5.28992 5.33700 5.34474 5.51800 5.56826 5.57932 5.76326 5.78378 5.83246 5.93979 5.97678 6.02606 6.11913 6.16540 6.50653 6.75524 6.78621 6.84949 7.24121 7.54797 7.61019 7.74784 7.97420 8.12208 8.36138 8.66589 8.93202 9.12263 9.60430 11.13882 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.008387 B = 0.006024 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3337.710606 B = 4646.689342 C = 5815.328859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 O -0.366 6.366 4 C 0.457 3.543 5 O -0.484 6.484 6 C 0.071 3.929 7 N -0.444 5.444 8 C 0.184 3.816 9 C -0.502 4.502 10 H 0.085 0.915 11 C 0.073 3.927 12 N -0.896 5.896 13 Si 0.868 3.132 14 H -0.277 1.277 15 H -0.284 1.284 16 H -0.267 1.267 17 C 0.367 3.633 18 N -0.521 5.521 19 C 0.155 3.845 20 C -0.105 4.105 21 C -0.197 4.197 22 C -0.047 4.047 23 C -0.156 4.156 24 C 0.555 3.445 25 N -0.868 5.868 26 O -0.455 6.455 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.136 0.864 34 H 0.006 0.994 35 H 0.026 0.974 36 H 0.263 0.737 37 H 0.078 0.922 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.135 0.865 41 H 0.136 0.864 42 H 0.388 0.612 43 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.682 -10.291 18.044 21.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.011 4.011 3 O -0.284 6.284 4 C 0.298 3.702 5 O -0.368 6.368 6 C -0.057 4.057 7 N -0.167 5.167 8 C 0.061 3.939 9 C -0.540 4.540 10 H 0.103 0.897 11 C -0.129 4.129 12 N -0.535 5.535 13 Si 0.696 3.304 14 H -0.202 1.202 15 H -0.210 1.210 16 H -0.192 1.192 17 C 0.138 3.862 18 N -0.235 5.235 19 C 0.015 3.985 20 C -0.163 4.163 21 C -0.217 4.217 22 C -0.073 4.073 23 C -0.163 4.163 24 C 0.338 3.662 25 N -0.436 5.436 26 O -0.324 6.324 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.102 0.898 33 H 0.154 0.846 34 H 0.024 0.976 35 H 0.044 0.956 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.097 0.903 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.216 0.784 43 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -4.146 -9.758 16.644 19.734 hybrid contribution 1.293 -0.030 1.246 1.796 sum -2.853 -9.788 17.891 20.592 Atomic orbital electron populations 1.21781 0.93038 1.02490 1.03437 1.22872 0.94949 0.81123 1.02135 1.86503 1.25396 1.31546 1.84909 1.24012 0.79972 0.93431 0.72749 1.90631 1.59949 1.42644 1.43596 1.21600 0.88193 0.89774 1.06173 1.59547 1.05112 1.38225 1.13786 1.20185 0.93809 0.82292 0.97655 1.20912 1.34547 1.09495 0.89054 0.89655 1.24801 0.95908 0.97517 0.94682 1.69883 1.45301 1.31394 1.06929 0.86967 0.81145 0.81722 0.80605 1.20232 1.21020 1.19153 1.20160 0.88983 0.87978 0.89084 1.67823 1.26842 1.29021 0.99823 1.21281 0.92044 0.93068 0.92121 1.20763 1.01290 0.99769 0.94440 1.21726 1.01557 0.98364 1.00055 1.21662 0.96462 0.97664 0.91513 1.20699 1.02763 0.98833 0.93981 1.17701 0.78839 0.80736 0.88936 1.43763 1.58043 1.30376 1.11382 1.91040 1.52093 1.67331 1.21920 0.91394 0.90672 0.91724 0.91427 0.91987 0.89793 0.84623 0.97623 0.95612 0.92654 0.90371 0.90730 0.90282 0.84686 0.84674 0.78435 0.76948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.29 37.15 0.38 -1.13 16 2 C 0.06 0.87 6.19 37.15 0.23 1.10 16 3 O -0.37 -6.31 10.22 -39.25 -0.40 -6.71 16 4 C 0.46 9.20 7.78 36.01 0.28 9.48 16 5 O -0.48 -10.69 14.47 -20.36 -0.29 -10.99 16 6 C 0.07 1.48 5.36 -4.98 -0.03 1.45 16 7 N -0.44 -10.30 1.98 -175.71 -0.35 -10.65 16 8 C 0.18 4.72 3.69 -4.98 -0.02 4.70 16 9 C -0.50 -14.73 8.96 -34.44 -0.31 -15.04 16 10 H 0.09 2.76 7.83 -52.48 -0.41 2.35 16 11 C 0.07 2.15 5.47 -17.82 -0.10 2.06 16 12 N -0.90 -27.99 13.96 55.43 0.77 -27.21 16 13 Si 0.87 21.99 27.39 -169.99 -4.66 17.34 16 14 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 15 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 16 H -0.27 -6.51 6.65 56.52 0.38 -6.14 16 17 C 0.37 7.52 4.41 -155.18 -0.68 6.84 16 18 N -0.52 -9.55 9.19 -8.44 -0.08 -9.62 16 19 C 0.16 2.21 6.78 -82.54 -0.56 1.65 16 20 C -0.11 -1.07 10.16 36.00 0.37 -0.70 16 21 C -0.20 -2.36 9.70 -39.49 -0.38 -2.74 16 22 C -0.05 -0.61 9.63 -38.89 -0.37 -0.98 16 23 C -0.16 -2.82 5.70 -104.64 -0.60 -3.42 16 24 C 0.56 10.68 7.54 -12.52 -0.09 10.58 16 25 N -0.87 -11.47 8.83 30.43 0.27 -11.20 16 26 O -0.46 -11.26 15.43 4.84 0.07 -11.19 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 31 H 0.06 0.82 8.13 -51.93 -0.42 0.40 16 32 H 0.08 1.61 7.22 -51.93 -0.38 1.23 16 33 H 0.14 2.94 6.98 -51.93 -0.36 2.58 16 34 H 0.01 0.15 7.37 -51.93 -0.38 -0.23 16 35 H 0.03 0.69 7.19 -51.92 -0.37 0.32 16 36 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.56 8.07 -51.93 -0.42 0.14 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.14 1.10 8.06 -52.48 -0.42 0.67 16 41 H 0.14 1.19 6.55 -52.49 -0.34 0.84 16 42 H 0.39 3.59 6.96 -40.82 -0.28 3.31 16 43 H 0.40 4.83 8.93 -40.82 -0.36 4.46 16 LS Contribution 364.45 15.07 5.49 5.49 Total: -1.00 -38.07 364.45 -6.91 -44.98 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -5.86 Total: 5.93 kcal Atomic # 6 Polarization: 15.72 SS G_CDS: -1.89 Total: 13.83 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: 0.62 Total: -58.69 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.62 Total: -28.88 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.66 Total: 17.34 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -38.07 -6.91 -44.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157161324.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.530 kcal (2) G-P(sol) polarization free energy of solvation -38.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds