Wall clock time and date at job start Tue Mar 31 2020 13:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45206 * 109.47250 * 2 1 4 4 C 1.34227 * 117.00193 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99924 * 359.97438 * 4 3 2 6 6 C 1.50703 * 119.99935 * 180.02562 * 4 3 2 7 7 N 1.46897 * 109.46990 * 177.07944 * 6 4 3 8 8 C 1.46897 * 110.99868 * 160.09216 * 7 6 4 9 9 C 1.50699 * 109.47592 * 287.94822 * 8 7 6 10 10 H 1.08003 * 119.99223 * 3.80252 * 9 8 7 11 11 C 1.37870 * 120.00288 * 183.79998 * 9 8 7 12 12 N 1.31519 * 120.00087 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 120.00219 * 0.02562 * 11 9 8 14 14 H 1.48505 * 109.46814 * 89.99794 * 13 11 9 15 15 H 1.48493 * 109.47100 * 210.00046 * 13 11 9 16 16 H 1.48499 * 109.46905 * 330.00018 * 13 11 9 17 17 C 1.38267 * 111.00170 * 284.04737 * 7 6 4 18 18 N 1.32429 * 119.82630 * 307.43828 * 17 7 6 19 19 C 1.31841 * 121.77821 * 180.02562 * 18 17 7 20 20 C 1.50697 * 119.39281 * 179.97438 * 19 18 17 21 21 C 1.38373 * 121.21877 * 0.25010 * 19 18 17 22 22 C 1.38341 * 119.50806 * 359.49595 * 21 19 18 23 23 C 1.39976 * 118.36223 * 0.49122 * 22 21 19 24 24 C 1.47429 * 120.60726 * 179.72719 * 23 22 21 25 25 N 1.34774 * 120.00131 * 5.70903 * 24 23 22 26 26 O 1.21604 * 120.00159 * 185.70537 * 24 23 22 27 27 H 1.08998 * 109.47207 * 60.00310 * 1 2 3 28 28 H 1.09004 * 109.46951 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46966 * 300.00004 * 1 2 3 30 30 H 1.09007 * 109.47279 * 240.00407 * 2 1 3 31 31 H 1.08998 * 109.47462 * 120.00431 * 2 1 3 32 32 H 1.08999 * 109.46950 * 57.08136 * 6 4 3 33 33 H 1.08997 * 109.46943 * 297.07790 * 6 4 3 34 34 H 1.08998 * 109.47364 * 47.95203 * 8 7 6 35 35 H 1.09008 * 109.47071 * 167.94763 * 8 7 6 36 36 H 0.96997 * 120.00293 * 179.97438 * 12 11 9 37 37 H 1.09003 * 109.47236 * 89.99815 * 20 19 18 38 38 H 1.09000 * 109.47337 * 209.99531 * 20 19 18 39 39 H 1.09001 * 109.47377 * 330.00012 * 20 19 18 40 40 H 1.08005 * 120.25122 * 179.72327 * 21 19 18 41 41 H 1.07996 * 120.81787 * 180.24557 * 22 21 19 42 42 H 0.97003 * 119.99754 * 0.02562 * 25 24 23 43 43 H 0.96997 * 120.00666 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 -0.0005 5 8 4.0807 0.5867 -0.0005 6 6 3.9207 2.9375 0.0000 7 7 5.3860 2.8613 0.0698 8 6 6.0008 4.1126 -0.3927 9 6 5.8486 4.2246 -1.8878 10 1 5.2923 3.4753 -2.4315 11 6 6.4194 5.2834 -2.5615 12 7 6.2862 5.3814 -3.8663 13 14 7.3821 6.5790 -1.6212 14 1 8.8102 6.1781 -1.5477 15 1 7.2696 7.8840 -2.3207 16 1 6.8319 6.7045 -0.2476 17 6 5.8054 2.5464 1.3492 18 7 5.3767 3.2619 2.3777 19 6 5.7522 2.9959 3.6132 20 6 5.2316 3.8457 4.7436 21 6 6.6200 1.9544 3.8906 22 6 7.0957 1.1698 2.8553 23 6 6.6847 1.4691 1.5511 24 6 7.1661 0.6690 0.4102 25 7 7.9161 -0.4298 0.6263 26 8 6.8863 1.0003 -0.7259 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 3.5439 3.4862 0.8632 33 1 3.6268 3.4525 -0.9145 34 1 5.5084 4.9585 0.0870 35 1 7.0598 4.1144 -0.1342 36 1 6.6874 6.1265 -4.3402 37 1 4.3043 3.4167 5.1234 38 1 5.9710 3.8787 5.5438 39 1 5.0427 4.8562 4.3814 40 1 6.9209 1.7532 4.9082 41 1 7.7708 0.3492 3.0481 42 1 8.1388 -0.6943 1.5325 43 1 8.2325 -0.9564 -0.1243 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157161324.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:09 Heat of formation + Delta-G solvation = -86.004052 kcal Electronic energy + Delta-G solvation = -28338.795826 eV Core-core repulsion = 24384.150296 eV Total energy + Delta-G solvation = -3954.645531 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.07121 -41.21860 -39.60657 -38.45461 -37.29691 -34.88662 -34.74478 -33.39149 -32.82023 -32.46661 -30.47093 -29.14879 -27.90737 -24.53338 -24.26271 -23.94243 -22.80113 -21.74703 -21.58403 -19.21660 -18.85091 -18.79465 -18.23250 -17.79106 -17.40286 -16.78937 -16.72895 -16.49977 -15.97248 -15.60126 -15.43183 -15.17720 -14.97207 -14.93505 -14.65518 -14.35094 -13.95273 -13.82651 -13.59237 -13.41104 -13.32310 -13.10783 -13.00239 -12.77996 -12.69370 -12.58303 -12.52430 -12.01467 -11.64563 -11.54600 -11.41621 -10.93887 -10.86539 -10.80727 -10.64788 -10.43740 -9.78732 -9.25201 -8.29470 -6.32679 -0.27437 0.18729 1.20180 1.29762 1.31573 1.42762 1.54391 2.09646 2.31200 2.65356 2.77632 2.87206 3.03124 3.39794 3.77432 3.77861 3.95146 3.95234 4.07651 4.09477 4.16702 4.29050 4.31971 4.41022 4.53744 4.65516 4.73989 4.75591 4.82041 4.83907 4.89117 4.98489 5.08075 5.10188 5.16421 5.40925 5.44073 5.57787 5.76360 6.07809 6.18115 6.56347 6.67878 6.70878 6.81084 6.94270 7.27842 7.64436 8.87690 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.008387 B = 0.006024 C = 0.004814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3337.710606 B = 4646.689342 C = 5815.328859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.054 3.946 3 O -0.366 6.366 4 C 0.462 3.538 5 O -0.505 6.505 6 C 0.073 3.927 7 N -0.461 5.461 8 C 0.205 3.795 9 C -0.507 4.507 10 H 0.034 0.966 11 C 0.014 3.986 12 N -0.943 5.943 13 Si 0.944 3.056 14 H -0.271 1.271 15 H -0.271 1.271 16 H -0.252 1.252 17 C 0.329 3.671 18 N -0.548 5.548 19 C 0.142 3.858 20 C -0.101 4.101 21 C -0.174 4.174 22 C -0.034 4.034 23 C -0.185 4.185 24 C 0.550 3.450 25 N -0.840 5.840 26 O -0.530 6.530 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.112 0.888 34 H 0.006 0.994 35 H 0.014 0.986 36 H 0.268 0.732 37 H 0.094 0.906 38 H 0.110 0.890 39 H 0.065 0.935 40 H 0.190 0.810 41 H 0.183 0.817 42 H 0.411 0.589 43 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.892 -10.971 22.879 25.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.019 4.019 3 O -0.283 6.283 4 C 0.304 3.696 5 O -0.392 6.392 6 C -0.056 4.056 7 N -0.184 5.184 8 C 0.080 3.920 9 C -0.546 4.546 10 H 0.052 0.948 11 C -0.184 4.184 12 N -0.584 5.584 13 Si 0.767 3.233 14 H -0.196 1.196 15 H -0.196 1.196 16 H -0.175 1.175 17 C 0.101 3.899 18 N -0.262 5.262 19 C 0.002 3.998 20 C -0.159 4.159 21 C -0.193 4.193 22 C -0.060 4.060 23 C -0.192 4.192 24 C 0.334 3.666 25 N -0.408 5.408 26 O -0.405 6.405 27 H 0.084 0.916 28 H 0.123 0.877 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.115 0.885 33 H 0.130 0.870 34 H 0.024 0.976 35 H 0.032 0.968 36 H 0.077 0.923 37 H 0.112 0.888 38 H 0.129 0.871 39 H 0.084 0.916 40 H 0.207 0.793 41 H 0.201 0.799 42 H 0.243 0.757 43 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -3.358 -10.499 21.546 24.202 hybrid contribution 0.983 0.007 -0.117 0.990 sum -2.375 -10.492 21.429 23.977 Atomic orbital electron populations 1.21811 0.89723 1.04544 1.03754 1.23271 0.97461 0.79181 1.02023 1.86492 1.23580 1.33971 1.84277 1.23764 0.80785 0.92708 0.72306 1.90603 1.60733 1.43115 1.44737 1.21484 0.88045 0.90653 1.05380 1.59243 1.05607 1.36523 1.17024 1.19721 0.93246 0.84183 0.94814 1.21021 1.33948 1.08353 0.91238 0.94752 1.25742 0.96970 1.00030 0.95643 1.70041 1.46735 1.32664 1.08913 0.85776 0.79288 0.78556 0.79693 1.19638 1.19613 1.17547 1.20095 0.91442 0.90052 0.88359 1.67718 1.27799 1.29675 1.01047 1.22144 0.91998 0.94163 0.91498 1.20890 1.02985 0.98261 0.93720 1.22323 0.98872 0.95977 1.02171 1.22183 0.95991 0.98557 0.89282 1.20809 1.03627 0.98922 0.95831 1.18116 0.78487 0.81536 0.88451 1.43457 1.55858 1.28394 1.13106 1.91008 1.55313 1.69561 1.24612 0.91596 0.87670 0.90865 0.92380 0.91347 0.88506 0.87036 0.97637 0.96813 0.92261 0.88792 0.87128 0.91617 0.79279 0.79943 0.75720 0.76195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 10.29 71.98 0.74 -1.89 16 2 C 0.05 1.49 6.19 71.98 0.45 1.93 16 3 O -0.37 -13.06 10.22 -51.39 -0.53 -13.59 16 4 C 0.46 19.68 7.78 71.24 0.55 20.23 16 5 O -0.51 -23.50 14.47 23.49 0.34 -23.16 16 6 C 0.07 3.26 5.36 85.56 0.46 3.72 16 7 N -0.46 -22.69 1.98 -709.82 -1.40 -24.09 16 8 C 0.20 11.08 3.69 85.56 0.32 11.40 16 9 C -0.51 -31.96 8.96 25.60 0.23 -31.73 16 10 H 0.03 2.45 7.83 -2.91 -0.02 2.42 16 11 C 0.01 0.85 5.47 84.65 0.46 1.32 16 12 N -0.94 -61.82 13.96 21.45 0.30 -61.53 16 13 Si 0.94 46.70 27.39 68.60 1.88 48.58 16 14 H -0.27 -13.10 7.11 99.48 0.71 -12.40 16 15 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 16 H -0.25 -11.73 6.65 99.48 0.66 -11.07 16 17 C 0.33 13.67 4.41 133.64 0.59 14.26 16 18 N -0.55 -19.69 9.19 -180.61 -1.66 -21.35 16 19 C 0.14 3.57 6.78 42.59 0.29 3.86 16 20 C -0.10 -1.64 10.16 71.23 0.72 -0.92 16 21 C -0.17 -3.24 9.70 22.33 0.22 -3.03 16 22 C -0.03 -0.75 9.63 22.72 0.22 -0.53 16 23 C -0.18 -6.57 5.70 -19.88 -0.11 -6.68 16 24 C 0.55 21.47 7.54 86.66 0.65 22.12 16 25 N -0.84 -21.10 8.83 -175.89 -1.55 -22.65 16 26 O -0.53 -27.92 15.43 -3.63 -0.06 -27.98 16 27 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.06 1.70 8.13 -2.38 -0.02 1.68 16 31 H 0.07 1.79 8.13 -2.39 -0.02 1.77 16 32 H 0.10 3.94 7.22 -2.39 -0.02 3.92 16 33 H 0.11 5.40 6.98 -2.39 -0.02 5.38 16 34 H 0.01 0.31 7.37 -2.39 -0.02 0.30 16 35 H 0.01 0.77 7.19 -2.38 -0.02 0.75 16 36 H 0.27 16.26 8.31 -92.71 -0.77 15.49 16 37 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.11 1.01 8.07 -2.39 -0.02 0.99 16 39 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.19 1.52 8.06 -2.91 -0.02 1.49 16 41 H 0.18 2.10 6.55 -2.91 -0.02 2.08 16 42 H 0.41 6.24 6.96 -92.71 -0.65 5.59 16 43 H 0.41 9.52 8.93 -92.71 -0.83 8.69 16 Total: -1.00 -92.97 364.45 2.65 -90.33 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -0.46 Total: 21.37 kcal Atomic # 6 Polarization: 28.28 SS G_CDS: 5.78 Total: 34.06 kcal Atomic # 7 Polarization: -125.30 SS G_CDS: -4.32 Total: -129.62 kcal Atomic # 8 Polarization: -64.49 SS G_CDS: -0.24 Total: -64.73 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 1.88 Total: 48.58 kcal Total: -92.97 2.65 -90.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157161324.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.324 kcal (2) G-P(sol) polarization free energy of solvation -92.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds