Wall clock time and date at job start Tue Mar 31 2020 13:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45195 * 109.47414 * 2 1 4 4 C 1.34237 * 117.00246 * 180.02562 * 3 2 1 5 5 O 1.20821 * 119.99411 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00056 * 180.02562 * 4 3 2 7 7 N 1.46495 * 109.46921 * 179.97438 * 6 4 3 8 8 C 1.46499 * 120.00155 * 269.99789 * 7 6 4 9 9 C 1.50703 * 109.47161 * 270.00410 * 8 7 6 10 10 H 1.08000 * 119.99884 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00010 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00246 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99865 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47367 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47413 * 119.99891 * 13 11 9 16 16 H 1.48502 * 109.47129 * 239.99588 * 13 11 9 17 17 C 1.39030 * 120.00194 * 89.99710 * 7 6 4 18 18 C 1.39119 * 119.64204 * 4.99919 * 17 7 6 19 19 C 1.39502 * 118.92939 * 179.72231 * 18 17 7 20 20 C 1.48161 * 120.88647 * 180.30071 * 19 18 17 21 21 N 1.34776 * 120.00355 * 180.02562 * 20 19 18 22 22 O 1.21521 * 119.99659 * 359.97438 * 20 19 18 23 23 C 1.40024 * 118.23560 * 0.27420 * 19 18 17 24 24 C 1.37943 * 119.17503 * 0.02562 * 23 19 18 25 25 C 1.50698 * 119.50163 * 179.97438 * 24 23 19 26 26 N 1.31930 * 121.00238 * 359.97161 * 24 23 19 27 27 H 1.09001 * 109.46972 * 59.99927 * 1 2 3 28 28 H 1.08997 * 109.47584 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47059 * 300.00520 * 1 2 3 30 30 H 1.09001 * 109.47213 * 239.99947 * 2 1 3 31 31 H 1.09001 * 109.46972 * 120.00073 * 2 1 3 32 32 H 1.08995 * 109.47255 * 59.99614 * 6 4 3 33 33 H 1.09000 * 109.46727 * 299.99139 * 6 4 3 34 34 H 1.09005 * 109.46924 * 29.99859 * 8 7 6 35 35 H 1.08997 * 109.47653 * 149.99910 * 8 7 6 36 36 H 0.96996 * 120.00333 * 180.02562 * 12 11 9 37 37 H 1.08002 * 120.53976 * 0.02562 * 18 17 7 38 38 H 0.96993 * 120.00070 * 359.97438 * 21 20 19 39 39 H 0.96998 * 119.99588 * 180.02562 * 21 20 19 40 40 H 1.07999 * 120.41123 * 179.97438 * 23 19 18 41 41 H 1.09005 * 109.46723 * 89.99233 * 25 24 23 42 42 H 1.08988 * 109.47529 * 209.99619 * 25 24 23 43 43 H 1.09001 * 109.46807 * 330.00141 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9209 2.9373 0.0000 7 7 5.3838 2.8606 -0.0001 8 6 6.1154 2.8217 1.2685 9 6 6.4406 4.2273 1.7041 10 1 6.1335 5.0656 1.0965 11 6 7.1312 4.4429 2.8778 12 7 7.5057 3.4220 3.6175 13 14 7.5350 6.1851 3.4174 14 1 7.0075 7.1478 2.4174 15 1 6.9111 6.4513 4.7385 16 1 9.0078 6.3412 3.5251 17 6 6.0779 2.8246 -1.2042 18 6 5.3853 2.9669 -2.4023 19 6 6.0973 2.9344 -3.6014 20 6 5.4043 3.0882 -4.9019 21 7 6.1098 3.0535 -6.0497 22 8 4.1997 3.2448 -4.9336 23 6 7.4846 2.7530 -3.5434 24 6 8.0936 2.6135 -2.3136 25 6 9.5861 2.4173 -2.2426 26 7 7.3894 2.6492 -1.1986 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.5853 3.4690 0.8904 33 1 3.5846 3.4699 -0.8896 34 1 5.5002 2.3391 2.0281 35 1 7.0396 2.2588 1.1380 36 1 7.9912 3.5737 4.4434 37 1 4.3141 3.1053 -2.4038 38 1 7.0712 2.9281 -6.0245 39 1 5.6560 3.1546 -6.9011 40 1 8.0702 2.7219 -4.4503 41 1 10.0773 3.3881 -2.1752 42 1 9.8331 1.8233 -1.3629 43 1 9.9274 1.8990 -3.1387 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157161900.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:13 Heat of formation + Delta-G solvation = -77.539844 kcal Electronic energy + Delta-G solvation = -27318.721065 eV Core-core repulsion = 23364.442570 eV Total energy + Delta-G solvation = -3954.278495 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.50356 -40.00977 -38.82525 -36.80671 -35.68250 -33.90376 -32.90240 -32.22149 -31.82558 -31.11548 -28.68678 -27.33030 -25.94288 -24.36226 -23.32333 -22.57464 -21.60276 -20.34551 -19.84636 -17.94858 -17.54783 -17.13269 -16.61960 -16.47551 -16.11225 -15.77746 -15.38952 -15.17893 -14.83564 -14.52328 -14.19553 -14.03441 -13.91778 -13.33055 -13.25398 -13.13323 -12.79451 -12.50678 -12.12155 -12.03840 -11.95357 -11.64605 -11.53901 -11.44543 -11.21750 -10.94582 -10.63676 -10.40939 -10.39755 -10.24597 -10.12836 -9.91317 -9.82909 -9.40739 -8.97246 -8.81341 -8.44223 -7.00825 -6.03689 -4.10643 1.10232 1.66945 2.54025 2.76256 3.10190 3.28167 3.35892 3.36538 3.40424 3.67624 4.32604 4.42806 4.73601 4.82090 4.91774 4.93044 5.05515 5.17084 5.27460 5.28323 5.31065 5.38686 5.45760 5.65354 5.70636 5.74873 5.77261 5.88116 5.90819 5.92141 6.11073 6.29130 6.40071 6.61994 6.64687 6.74467 7.02403 7.21812 7.47316 7.72644 7.88369 8.07454 8.13001 8.15551 8.21351 8.72732 8.95266 9.53921 11.02360 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.007282 B = 0.005640 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3844.154841 B = 4963.249351 C = 7785.118800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.362 6.362 4 C 0.437 3.563 5 O -0.493 6.493 6 C 0.134 3.866 7 N -0.568 5.568 8 C 0.257 3.743 9 C -0.527 4.527 10 H 0.059 0.941 11 C 0.064 3.936 12 N -0.892 5.892 13 Si 0.896 3.104 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.283 1.283 17 C 0.431 3.569 18 C -0.204 4.204 19 C -0.054 4.054 20 C 0.569 3.431 21 N -0.849 5.849 22 O -0.538 6.538 23 C -0.228 4.228 24 C 0.178 3.822 25 C -0.102 4.102 26 N -0.499 5.499 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.130 0.870 33 H 0.112 0.888 34 H 0.028 0.972 35 H 0.055 0.945 36 H 0.262 0.738 37 H 0.136 0.864 38 H 0.403 0.597 39 H 0.403 0.597 40 H 0.126 0.874 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.803 -3.557 -14.655 15.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.279 6.279 4 C 0.277 3.723 5 O -0.378 6.378 6 C 0.007 3.993 7 N -0.276 5.276 8 C 0.138 3.862 9 C -0.566 4.566 10 H 0.077 0.923 11 C -0.139 4.139 12 N -0.531 5.531 13 Si 0.724 3.276 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.209 1.209 17 C 0.195 3.805 18 C -0.230 4.230 19 C -0.065 4.065 20 C 0.354 3.646 21 N -0.413 5.413 22 O -0.415 6.415 23 C -0.252 4.252 24 C 0.038 3.962 25 C -0.160 4.160 26 N -0.216 5.216 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.148 0.852 33 H 0.129 0.871 34 H 0.046 0.954 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.153 0.847 38 H 0.232 0.768 39 H 0.234 0.766 40 H 0.144 0.856 41 H 0.097 0.903 42 H 0.098 0.902 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -4.967 -3.933 -13.297 14.730 hybrid contribution 0.162 0.772 -0.700 1.054 sum -4.805 -3.162 -13.997 15.133 Atomic orbital electron populations 1.21790 0.92867 1.02651 1.03468 1.22948 0.95104 0.80865 1.02410 1.86511 1.25007 1.31947 1.84485 1.25025 0.80364 0.94273 0.72685 1.90673 1.60279 1.42864 1.43997 1.20925 0.81878 0.89727 1.06804 1.46776 1.02195 1.73365 1.05285 1.19388 0.92561 0.97412 0.76822 1.21493 1.36398 0.92370 1.06303 0.92308 1.24905 0.95512 0.97117 0.96336 1.69952 1.38919 1.29929 1.14282 0.86475 0.78158 0.84575 0.78383 1.19816 1.21012 1.20944 1.18145 0.88114 0.88634 0.85636 1.21450 1.01206 1.09454 0.90916 1.19727 0.93713 1.00492 0.92568 1.18342 0.86518 0.75305 0.84388 1.43703 1.12402 1.76882 1.08359 1.90791 1.14212 1.48850 1.87666 1.21504 0.93444 1.11477 0.98745 1.20890 0.96339 0.91789 0.87218 1.20706 0.89174 1.02936 1.03155 1.67024 1.06206 1.17730 1.30642 0.91537 0.90558 0.91464 0.91569 0.91380 0.85232 0.87052 0.95428 0.92684 0.92778 0.84671 0.76753 0.76635 0.85626 0.90339 0.90171 0.91132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.29 37.16 0.38 -1.03 16 2 C 0.06 0.79 6.19 37.16 0.23 1.02 16 3 O -0.36 -5.63 10.22 -39.28 -0.40 -6.03 16 4 C 0.44 7.93 8.03 36.01 0.29 8.22 16 5 O -0.49 -10.59 16.18 -18.75 -0.30 -10.89 16 6 C 0.13 2.36 5.84 -5.20 -0.03 2.33 16 7 N -0.57 -12.36 2.06 -176.61 -0.36 -12.73 16 8 C 0.26 6.64 5.22 -5.19 -0.03 6.61 16 9 C -0.53 -14.37 9.39 -34.44 -0.32 -14.69 16 10 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -25.98 13.29 55.43 0.74 -25.24 16 13 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 14 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 17 C 0.43 9.07 7.37 -155.07 -1.14 7.93 16 18 C -0.20 -3.75 8.84 -38.78 -0.34 -4.09 16 19 C -0.05 -0.86 5.91 -104.68 -0.62 -1.48 16 20 C 0.57 8.18 8.07 -12.19 -0.10 8.08 16 21 N -0.85 -7.69 8.83 30.60 0.27 -7.42 16 22 O -0.54 -9.57 17.28 5.35 0.09 -9.48 16 23 C -0.23 -3.20 9.23 -39.02 -0.36 -3.56 16 24 C 0.18 2.99 6.77 -82.66 -0.56 2.43 16 25 C -0.10 -1.33 10.16 36.00 0.37 -0.96 16 26 N -0.50 -10.61 8.96 -8.71 -0.08 -10.69 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.86 8.13 -51.93 -0.42 0.43 16 31 H 0.07 0.90 8.13 -51.93 -0.42 0.47 16 32 H 0.13 2.13 8.07 -51.93 -0.42 1.71 16 33 H 0.11 1.67 5.98 -51.93 -0.31 1.36 16 34 H 0.03 0.76 8.07 -51.93 -0.42 0.34 16 35 H 0.06 1.58 7.29 -51.93 -0.38 1.20 16 36 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 37 H 0.14 2.38 5.71 -52.49 -0.30 2.08 16 38 H 0.40 2.57 6.97 -40.82 -0.28 2.29 16 39 H 0.40 2.88 8.93 -40.82 -0.36 2.52 16 40 H 0.13 1.19 6.53 -52.49 -0.34 0.85 16 41 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.08 1.15 8.14 -51.94 -0.42 0.73 16 43 H 0.07 0.67 8.07 -51.93 -0.42 0.25 16 LS Contribution 373.15 15.07 5.62 5.62 Total: -1.00 -35.84 373.15 -7.52 -43.36 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -5.74 Total: 4.72 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: -2.33 Total: 12.46 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 0.56 Total: -56.07 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.61 Total: -26.40 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.84 -7.52 -43.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157161900.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.179 kcal (2) G-P(sol) polarization free energy of solvation -35.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds