Wall clock time and date at job start Tue Mar 31 2020 13:12:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45195 * 109.47414 * 2 1 4 4 C 1.34237 * 117.00246 * 180.02562 * 3 2 1 5 5 O 1.20821 * 119.99411 * 359.97438 * 4 3 2 6 6 C 1.50699 * 120.00056 * 180.02562 * 4 3 2 7 7 N 1.46495 * 109.46921 * 179.97438 * 6 4 3 8 8 C 1.46499 * 120.00155 * 269.99789 * 7 6 4 9 9 C 1.50703 * 109.47161 * 270.00410 * 8 7 6 10 10 H 1.08000 * 119.99884 * 359.97438 * 9 8 7 11 11 C 1.37876 * 120.00010 * 180.02562 * 9 8 7 12 12 N 1.31511 * 120.00246 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99865 * 179.97438 * 11 9 8 14 14 H 1.48496 * 109.47367 * 359.97438 * 13 11 9 15 15 H 1.48503 * 109.47413 * 119.99891 * 13 11 9 16 16 H 1.48502 * 109.47129 * 239.99588 * 13 11 9 17 17 C 1.39030 * 120.00194 * 89.99710 * 7 6 4 18 18 C 1.39119 * 119.64204 * 4.99919 * 17 7 6 19 19 C 1.39502 * 118.92939 * 179.72231 * 18 17 7 20 20 C 1.48161 * 120.88647 * 180.30071 * 19 18 17 21 21 N 1.34776 * 120.00355 * 180.02562 * 20 19 18 22 22 O 1.21521 * 119.99659 * 359.97438 * 20 19 18 23 23 C 1.40024 * 118.23560 * 0.27420 * 19 18 17 24 24 C 1.37943 * 119.17503 * 0.02562 * 23 19 18 25 25 C 1.50698 * 119.50163 * 179.97438 * 24 23 19 26 26 N 1.31930 * 121.00238 * 359.97161 * 24 23 19 27 27 H 1.09001 * 109.46972 * 59.99927 * 1 2 3 28 28 H 1.08997 * 109.47584 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47059 * 300.00520 * 1 2 3 30 30 H 1.09001 * 109.47213 * 239.99947 * 2 1 3 31 31 H 1.09001 * 109.46972 * 120.00073 * 2 1 3 32 32 H 1.08995 * 109.47255 * 59.99614 * 6 4 3 33 33 H 1.09000 * 109.46727 * 299.99139 * 6 4 3 34 34 H 1.09005 * 109.46924 * 29.99859 * 8 7 6 35 35 H 1.08997 * 109.47653 * 149.99910 * 8 7 6 36 36 H 0.96996 * 120.00333 * 180.02562 * 12 11 9 37 37 H 1.08002 * 120.53976 * 0.02562 * 18 17 7 38 38 H 0.96993 * 120.00070 * 359.97438 * 21 20 19 39 39 H 0.96998 * 119.99588 * 180.02562 * 21 20 19 40 40 H 1.07999 * 120.41123 * 179.97438 * 23 19 18 41 41 H 1.09005 * 109.46723 * 89.99233 * 25 24 23 42 42 H 1.08988 * 109.47529 * 209.99619 * 25 24 23 43 43 H 1.09001 * 109.46807 * 330.00141 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9209 2.9373 0.0000 7 7 5.3838 2.8606 -0.0001 8 6 6.1154 2.8217 1.2685 9 6 6.4406 4.2273 1.7041 10 1 6.1335 5.0656 1.0965 11 6 7.1312 4.4429 2.8778 12 7 7.5057 3.4220 3.6175 13 14 7.5350 6.1851 3.4174 14 1 7.0075 7.1478 2.4174 15 1 6.9111 6.4513 4.7385 16 1 9.0078 6.3412 3.5251 17 6 6.0779 2.8246 -1.2042 18 6 5.3853 2.9669 -2.4023 19 6 6.0973 2.9344 -3.6014 20 6 5.4043 3.0882 -4.9019 21 7 6.1098 3.0535 -6.0497 22 8 4.1997 3.2448 -4.9336 23 6 7.4846 2.7530 -3.5434 24 6 8.0936 2.6135 -2.3136 25 6 9.5861 2.4173 -2.2426 26 7 7.3894 2.6492 -1.1986 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.5853 3.4690 0.8904 33 1 3.5846 3.4699 -0.8896 34 1 5.5002 2.3391 2.0281 35 1 7.0396 2.2588 1.1380 36 1 7.9912 3.5737 4.4434 37 1 4.3141 3.1053 -2.4038 38 1 7.0712 2.9281 -6.0245 39 1 5.6560 3.1546 -6.9011 40 1 8.0702 2.7219 -4.4503 41 1 10.0773 3.3881 -2.1752 42 1 9.8331 1.8233 -1.3629 43 1 9.9274 1.8990 -3.1387 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157161900.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:13 Heat of formation + Delta-G solvation = -102.681551 kcal Electronic energy + Delta-G solvation = -27319.811292 eV Core-core repulsion = 23364.442570 eV Total energy + Delta-G solvation = -3955.368721 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.87856 -41.34434 -40.05976 -38.21461 -37.20487 -35.00330 -34.83507 -33.57747 -32.91188 -32.36905 -30.44670 -28.62658 -27.57606 -25.73055 -24.45012 -24.27360 -22.92520 -21.63839 -21.15932 -19.19478 -18.95586 -18.50675 -18.26229 -17.89845 -17.49668 -17.21314 -16.78947 -16.50105 -16.30067 -16.03102 -15.46051 -15.31856 -15.17859 -14.75561 -14.61872 -14.39309 -14.25683 -13.64722 -13.45774 -13.33450 -13.24321 -13.03286 -12.90350 -12.79592 -12.68839 -12.55441 -12.50395 -12.13666 -12.00799 -11.58952 -11.56874 -11.46584 -10.99426 -10.72597 -10.61404 -10.45339 -10.21737 -8.60508 -8.10556 -6.31783 -0.17569 0.34212 1.08873 1.39493 1.40630 1.45571 1.54362 1.90442 2.14428 2.40555 2.45296 2.99055 3.12635 3.48905 3.70301 3.72875 3.89659 3.96414 4.04574 4.07614 4.09944 4.20826 4.30043 4.35411 4.55744 4.67498 4.79820 4.87548 4.90508 4.91253 5.06577 5.08948 5.10063 5.19547 5.30555 5.39008 5.61603 5.74212 5.83754 6.01715 6.12102 6.34653 6.42354 6.69012 6.79919 7.22319 7.32774 7.40253 8.90172 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.007282 B = 0.005640 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3844.154841 B = 4963.249351 C = 7785.118800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.050 3.950 3 O -0.357 6.357 4 C 0.443 3.557 5 O -0.533 6.533 6 C 0.133 3.867 7 N -0.585 5.585 8 C 0.283 3.717 9 C -0.532 4.532 10 H 0.056 0.944 11 C 0.012 3.988 12 N -0.929 5.929 13 Si 0.967 3.033 14 H -0.267 1.267 15 H -0.275 1.275 16 H -0.280 1.280 17 C 0.403 3.597 18 C -0.217 4.217 19 C -0.059 4.059 20 C 0.571 3.429 21 N -0.817 5.817 22 O -0.578 6.578 23 C -0.196 4.196 24 C 0.157 3.843 25 C -0.099 4.099 26 N -0.547 5.547 27 H 0.072 0.928 28 H 0.101 0.899 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.000 1.000 35 H 0.015 0.985 36 H 0.266 0.734 37 H 0.135 0.865 38 H 0.420 0.580 39 H 0.417 0.583 40 H 0.183 0.817 41 H 0.088 0.912 42 H 0.056 0.944 43 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.508 -2.490 -17.506 18.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.023 4.023 3 O -0.273 6.273 4 C 0.285 3.715 5 O -0.422 6.422 6 C 0.007 3.993 7 N -0.295 5.295 8 C 0.162 3.838 9 C -0.571 4.571 10 H 0.074 0.926 11 C -0.187 4.187 12 N -0.569 5.569 13 Si 0.792 3.208 14 H -0.191 1.191 15 H -0.201 1.201 16 H -0.206 1.206 17 C 0.168 3.832 18 C -0.243 4.243 19 C -0.070 4.070 20 C 0.355 3.645 21 N -0.382 5.382 22 O -0.458 6.458 23 C -0.219 4.219 24 C 0.017 3.983 25 C -0.156 4.156 26 N -0.266 5.266 27 H 0.091 0.909 28 H 0.120 0.880 29 H 0.089 0.911 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.154 0.846 33 H 0.156 0.844 34 H 0.018 0.982 35 H 0.033 0.967 36 H 0.074 0.926 37 H 0.153 0.847 38 H 0.253 0.747 39 H 0.251 0.749 40 H 0.200 0.800 41 H 0.107 0.893 42 H 0.075 0.925 43 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.661 -2.864 -16.230 17.127 hybrid contribution 0.128 0.345 0.021 0.368 sum -4.533 -2.519 -16.210 17.019 Atomic orbital electron populations 1.21811 0.89606 1.04492 1.03939 1.23305 0.97591 0.79390 1.02040 1.86509 1.23321 1.33729 1.83738 1.25086 0.80947 0.93966 0.71531 1.90647 1.61373 1.44058 1.46141 1.21106 0.80050 0.89849 1.08303 1.46519 1.03441 1.75214 1.04342 1.18681 0.90807 0.95987 0.78296 1.21688 1.36270 0.92756 1.06370 0.92592 1.25788 0.95235 1.01328 0.96338 1.70085 1.39714 1.32292 1.14800 0.85380 0.77880 0.79393 0.78177 1.19118 1.20065 1.20590 1.18366 0.88511 0.90345 0.85933 1.21452 1.01340 1.10417 0.91075 1.20051 0.94625 0.99593 0.92722 1.18119 0.86011 0.75445 0.84895 1.43421 1.13159 1.74272 1.07340 1.90783 1.15866 1.51072 1.88099 1.22017 0.92862 1.07244 0.99795 1.21659 0.97915 0.91472 0.87237 1.20830 0.86787 1.03659 1.04340 1.66988 1.06946 1.19053 1.33581 0.90938 0.87998 0.91067 0.91803 0.92055 0.84567 0.84433 0.98231 0.96655 0.92555 0.84714 0.74722 0.74931 0.79961 0.89304 0.92468 0.86632 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.45 10.29 71.98 0.74 -1.71 16 2 C 0.05 1.32 6.19 71.98 0.45 1.76 16 3 O -0.36 -11.31 10.22 -51.48 -0.53 -11.84 16 4 C 0.44 16.89 8.03 71.24 0.57 17.46 16 5 O -0.53 -24.38 16.18 21.98 0.36 -24.02 16 6 C 0.13 4.93 5.84 85.63 0.50 5.43 16 7 N -0.59 -26.99 2.06 -712.66 -1.47 -28.46 16 8 C 0.28 15.68 5.22 85.63 0.45 16.13 16 9 C -0.53 -30.20 9.39 25.60 0.24 -29.96 16 10 H 0.06 3.14 7.81 -2.91 -0.02 3.12 16 11 C 0.01 0.68 5.46 84.65 0.46 1.14 16 12 N -0.93 -56.08 13.29 21.45 0.28 -55.80 16 13 Si 0.97 44.37 29.54 68.60 2.03 46.40 16 14 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 15 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 16 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 17 C 0.40 17.63 7.37 133.08 0.98 18.61 16 18 C -0.22 -8.06 8.84 22.79 0.20 -7.86 16 19 C -0.06 -1.77 5.91 -19.90 -0.12 -1.89 16 20 C 0.57 14.91 8.07 86.88 0.70 15.61 16 21 N -0.82 -11.24 8.83 -175.38 -1.55 -12.79 16 22 O -0.58 -19.75 17.28 -3.78 -0.07 -19.81 16 23 C -0.20 -4.89 9.23 22.63 0.21 -4.68 16 24 C 0.16 5.09 6.77 42.47 0.29 5.38 16 25 C -0.10 -2.38 10.16 71.24 0.72 -1.66 16 26 N -0.55 -24.11 8.96 -181.47 -1.63 -25.74 16 27 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.06 1.69 8.13 -2.39 -0.02 1.67 16 31 H 0.06 1.67 8.13 -2.39 -0.02 1.65 16 32 H 0.14 4.73 8.07 -2.39 -0.02 4.71 16 33 H 0.14 4.27 5.98 -2.39 -0.01 4.26 16 34 H 0.00 -0.02 8.07 -2.38 -0.02 -0.04 16 35 H 0.02 0.96 7.29 -2.39 -0.02 0.94 16 36 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 37 H 0.14 4.86 5.71 -2.91 -0.02 4.84 16 38 H 0.42 2.97 6.97 -92.71 -0.65 2.33 16 39 H 0.42 4.19 8.93 -92.71 -0.83 3.37 16 40 H 0.18 2.31 6.53 -2.91 -0.02 2.29 16 41 H 0.09 1.95 8.14 -2.38 -0.02 1.94 16 42 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.12 1.69 8.07 -2.39 -0.02 1.67 16 Total: -1.00 -84.03 373.15 3.42 -80.61 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -0.41 Total: 17.68 kcal Atomic # 6 Polarization: 27.38 SS G_CDS: 6.39 Total: 33.77 kcal Atomic # 7 Polarization: -118.43 SS G_CDS: -4.36 Total: -122.79 kcal Atomic # 8 Polarization: -55.44 SS G_CDS: -0.24 Total: -55.67 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 2.03 Total: 46.40 kcal Total: -84.03 3.42 -80.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157161900.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.068 kcal (2) G-P(sol) polarization free energy of solvation -84.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds