Wall clock time and date at job start Tue Mar 31 2020 13:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45208 * 109.46793 * 2 1 4 4 C 1.34224 * 116.99863 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00098 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00251 * 179.97438 * 4 3 2 7 7 N 1.46495 * 109.47711 * 180.02562 * 6 4 3 8 8 C 1.46499 * 120.00313 * 270.00219 * 7 6 4 9 9 C 1.50694 * 109.47328 * 269.99974 * 8 7 6 10 10 H 1.08005 * 119.99926 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00123 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99771 * 179.97438 * 11 9 8 13 13 Si 1.86795 * 119.99980 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.47349 * 90.00064 * 13 11 9 15 15 H 1.48506 * 109.47083 * 209.99860 * 13 11 9 16 16 H 1.48508 * 109.47053 * 329.99739 * 13 11 9 17 17 C 1.39030 * 119.99809 * 90.00127 * 7 6 4 18 18 C 1.39119 * 119.64218 * 185.00335 * 17 7 6 19 19 C 1.39507 * 118.92588 * 179.74602 * 18 17 7 20 20 C 1.48164 * 120.87955 * 180.23309 * 19 18 17 21 21 O 1.21521 * 119.99943 * 359.97438 * 20 19 18 22 22 N 1.34776 * 120.00015 * 180.02562 * 20 19 18 23 23 C 1.46505 * 119.99834 * 179.97438 * 22 20 19 24 24 C 1.40014 * 118.23908 * 0.25101 * 19 18 17 25 25 C 1.37942 * 119.17505 * 359.97438 * 24 19 18 26 26 N 1.31930 * 121.00261 * 0.02562 * 25 24 19 27 27 H 1.08997 * 109.47555 * 60.00196 * 1 2 3 28 28 H 1.09007 * 109.47225 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47720 * 300.00106 * 1 2 3 30 30 H 1.08990 * 109.47525 * 240.00265 * 2 1 3 31 31 H 1.08997 * 109.47059 * 119.99626 * 2 1 3 32 32 H 1.09002 * 109.46941 * 59.99812 * 6 4 3 33 33 H 1.09003 * 109.47409 * 300.00852 * 6 4 3 34 34 H 1.09008 * 109.46616 * 29.99931 * 8 7 6 35 35 H 1.08995 * 109.47337 * 149.99500 * 8 7 6 36 36 H 0.97004 * 119.99864 * 180.02562 * 12 11 9 37 37 H 1.08002 * 120.53976 * 0.02562 * 18 17 7 38 38 H 0.96992 * 120.00124 * 359.97438 * 22 20 19 39 39 H 1.09000 * 109.46828 * 299.99225 * 23 22 20 40 40 H 1.08999 * 109.47165 * 59.99519 * 23 22 20 41 41 H 1.09002 * 109.46559 * 179.97438 * 23 22 20 42 42 H 1.07999 * 120.41114 * 179.97438 * 24 19 18 43 43 H 1.08002 * 119.50312 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0806 0.5868 0.0005 6 6 3.9206 2.9375 0.0000 7 7 5.3835 2.8610 0.0001 8 6 6.1150 2.8232 1.2689 9 6 6.4401 4.2290 1.7034 10 1 6.1329 5.0669 1.0951 11 6 7.1296 4.4457 2.8775 12 7 7.4137 5.6726 3.2564 13 14 7.6602 2.9965 3.9300 14 1 9.0120 2.5480 3.5096 15 1 7.6966 3.4079 5.3565 16 1 6.6939 1.8817 3.7608 17 6 6.0778 2.8242 -1.2039 18 6 7.4575 2.6464 -1.1974 19 6 8.1385 2.6064 -2.4143 20 6 9.6069 2.4140 -2.4581 21 8 10.2344 2.2889 -1.4249 22 7 10.2469 2.3786 -3.6437 23 6 11.6990 2.1889 -3.6869 24 6 7.3975 2.7533 -3.5932 25 6 6.0319 2.9304 -3.5115 26 7 5.4197 2.9633 -2.3433 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5137 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.5842 3.4702 0.8895 33 1 3.5850 3.4692 -0.8904 34 1 5.4998 2.3411 2.0287 35 1 7.0392 2.2602 1.1388 36 1 7.8992 5.8250 4.0823 37 1 7.9923 2.5365 -0.2655 38 1 9.7462 2.4788 -4.4683 39 1 12.1876 3.0007 -3.1480 40 1 11.9551 1.2375 -3.2208 41 1 12.0344 2.1872 -4.7240 42 1 7.8890 2.7283 -4.5545 43 1 5.4553 3.0447 -4.4175 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157162001.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:20 Heat of formation + Delta-G solvation = -65.071489 kcal Electronic energy + Delta-G solvation = -27132.489260 eV Core-core repulsion = 23178.751433 eV Total energy + Delta-G solvation = -3953.737827 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.45295 -40.02142 -38.88549 -36.75076 -35.67920 -34.62100 -32.78977 -32.15681 -31.81680 -30.26139 -29.07271 -27.14912 -26.36819 -23.76234 -23.24239 -22.94091 -21.35359 -20.96429 -19.85811 -18.09591 -17.60637 -16.90333 -16.64684 -16.55160 -15.95923 -15.70408 -15.31209 -15.25134 -15.16522 -14.35749 -14.24219 -13.94383 -13.84383 -13.53672 -13.37479 -13.12374 -12.84078 -12.75745 -12.48003 -12.40444 -12.12239 -11.82489 -11.62190 -11.55989 -11.39048 -11.08788 -10.63929 -10.50169 -10.43459 -10.12354 -10.05183 -9.73791 -9.53514 -9.21297 -9.13304 -9.08918 -8.66858 -7.03239 -6.17657 -4.19617 1.13755 1.68779 2.55773 2.75284 3.15707 3.18539 3.26425 3.32546 3.36126 3.61818 4.32903 4.34284 4.73917 4.82316 4.88241 4.90062 5.04714 5.07136 5.14688 5.22938 5.28007 5.35924 5.42204 5.54004 5.60679 5.64702 5.70128 5.71129 5.83054 5.87978 6.01991 6.19736 6.32622 6.38409 6.55613 6.63507 6.76037 6.88632 7.37268 7.45569 7.47264 7.89014 8.11134 8.26343 8.33884 8.53446 8.87342 9.41319 10.94733 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.008229 B = 0.005068 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3401.855392 B = 5523.201017 C = 8042.549863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.362 6.362 4 C 0.443 3.557 5 O -0.502 6.502 6 C 0.141 3.859 7 N -0.563 5.563 8 C 0.224 3.776 9 C -0.543 4.543 10 H 0.081 0.919 11 C 0.080 3.920 12 N -0.889 5.889 13 Si 0.866 3.134 14 H -0.269 1.269 15 H -0.282 1.282 16 H -0.264 1.264 17 C 0.423 3.577 18 C -0.153 4.153 19 C -0.058 4.058 20 C 0.559 3.441 21 O -0.522 6.522 22 N -0.733 5.733 23 C 0.089 3.911 24 C -0.225 4.225 25 C 0.142 3.858 26 N -0.542 5.542 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.036 0.964 35 H 0.034 0.966 36 H 0.267 0.733 37 H 0.153 0.847 38 H 0.402 0.598 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.074 0.926 42 H 0.126 0.874 43 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.237 -8.387 -14.837 17.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.279 6.279 4 C 0.284 3.716 5 O -0.389 6.389 6 C 0.015 3.985 7 N -0.272 5.272 8 C 0.103 3.897 9 C -0.581 4.581 10 H 0.099 0.901 11 C -0.124 4.124 12 N -0.526 5.526 13 Si 0.692 3.308 14 H -0.194 1.194 15 H -0.208 1.208 16 H -0.189 1.189 17 C 0.187 3.813 18 C -0.178 4.178 19 C -0.069 4.069 20 C 0.346 3.654 21 O -0.397 6.397 22 N -0.386 5.386 23 C -0.055 4.055 24 C -0.249 4.249 25 C -0.015 4.015 26 N -0.261 5.261 27 H 0.085 0.915 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.141 0.859 33 H 0.140 0.860 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.170 0.830 38 H 0.236 0.764 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.144 0.856 43 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -5.416 -8.570 -13.678 17.026 hybrid contribution 1.096 -0.910 0.174 1.435 sum -4.321 -9.480 -13.505 17.056 Atomic orbital electron populations 1.21788 0.92884 1.02613 1.03484 1.22926 0.95093 0.81006 1.02280 1.86521 1.25156 1.31754 1.84485 1.25068 0.80192 0.94308 0.72037 1.90638 1.60351 1.43111 1.44769 1.20775 0.81589 0.89274 1.06884 1.46331 1.02941 1.74259 1.03692 1.19876 0.92222 0.98399 0.79166 1.21358 1.37677 0.91344 1.07727 0.90111 1.24805 0.94879 0.95576 0.97105 1.69880 1.39565 1.19674 1.23473 0.86999 0.80315 0.83248 0.80242 1.19446 1.20757 1.18869 1.18192 0.88027 0.89085 0.85987 1.21702 0.93454 1.03475 0.99201 1.19868 0.92505 1.00467 0.94052 1.18368 0.87193 0.76363 0.83487 1.90809 1.67860 1.48024 1.33040 1.45651 1.08967 1.75401 1.08594 1.21536 0.79870 1.02155 1.01967 1.21670 0.95715 1.10295 0.97223 1.22145 0.91467 0.93482 0.94394 1.66979 1.40840 1.20638 0.97677 0.91531 0.90605 0.91467 0.91631 0.91554 0.85935 0.85953 0.94657 0.94773 0.92323 0.82985 0.76353 0.92039 0.92192 0.90695 0.85635 0.82929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.29 37.16 0.38 -0.93 16 2 C 0.06 0.75 6.19 37.16 0.23 0.98 16 3 O -0.36 -5.46 10.22 -39.24 -0.40 -5.86 16 4 C 0.44 7.85 8.03 36.00 0.29 8.14 16 5 O -0.50 -10.40 16.18 -18.75 -0.30 -10.71 16 6 C 0.14 2.50 6.06 -5.20 -0.03 2.47 16 7 N -0.56 -11.90 2.06 -176.61 -0.36 -12.26 16 8 C 0.22 5.33 4.07 -5.20 -0.02 5.31 16 9 C -0.54 -14.82 9.94 -34.44 -0.34 -15.16 16 10 H 0.08 2.41 8.06 -52.48 -0.42 1.99 16 11 C 0.08 2.27 5.47 -17.82 -0.10 2.17 16 12 N -0.89 -26.60 13.96 55.43 0.77 -25.83 16 13 Si 0.87 21.18 27.47 -169.99 -4.67 16.51 16 14 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.26 -6.21 6.54 56.52 0.37 -5.84 16 17 C 0.42 8.66 7.37 -155.07 -1.14 7.51 16 18 C -0.15 -3.17 8.84 -38.78 -0.34 -3.51 16 19 C -0.06 -1.00 5.90 -104.68 -0.62 -1.62 16 20 C 0.56 9.46 7.80 -12.18 -0.10 9.36 16 21 O -0.52 -11.06 16.44 5.35 0.09 -10.98 16 22 N -0.73 -8.58 5.67 -67.94 -0.39 -8.96 16 23 C 0.09 0.86 10.70 59.85 0.64 1.50 16 24 C -0.23 -3.03 9.61 -39.02 -0.37 -3.40 16 25 C 0.14 2.02 11.16 -17.62 -0.20 1.82 16 26 N -0.54 -9.69 9.04 -12.48 -0.11 -9.80 16 27 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.80 8.13 -51.93 -0.42 0.38 16 31 H 0.07 0.83 8.13 -51.93 -0.42 0.41 16 32 H 0.12 2.03 8.07 -51.93 -0.42 1.61 16 33 H 0.12 1.97 7.29 -51.93 -0.38 1.59 16 34 H 0.04 0.84 7.13 -51.92 -0.37 0.47 16 35 H 0.03 0.84 5.40 -51.93 -0.28 0.56 16 36 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.15 3.53 5.71 -52.49 -0.30 3.23 16 38 H 0.40 3.35 6.97 -40.82 -0.28 3.07 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.13 1.13 6.53 -52.49 -0.34 0.79 16 43 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 369.87 15.07 5.57 5.57 Total: -1.00 -35.65 369.87 -7.29 -42.94 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -5.77 Total: 4.73 kcal Atomic # 6 Polarization: 16.35 SS G_CDS: -1.72 Total: 14.63 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -0.09 Total: -56.86 kcal Atomic # 8 Polarization: -26.92 SS G_CDS: -0.62 Total: -27.54 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.65 -7.29 -42.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157162001.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.129 kcal (2) G-P(sol) polarization free energy of solvation -35.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds