Wall clock time and date at job start Tue Mar 31 2020 13:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.45208 * 109.46793 * 2 1 4 4 C 1.34224 * 116.99863 * 179.97438 * 3 2 1 5 5 O 1.20824 * 120.00098 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00251 * 179.97438 * 4 3 2 7 7 N 1.46495 * 109.47711 * 180.02562 * 6 4 3 8 8 C 1.46499 * 120.00313 * 270.00219 * 7 6 4 9 9 C 1.50694 * 109.47328 * 269.99974 * 8 7 6 10 10 H 1.08005 * 119.99926 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00123 * 179.97438 * 9 8 7 12 12 N 1.31516 * 119.99771 * 179.97438 * 11 9 8 13 13 Si 1.86795 * 119.99980 * 359.97438 * 11 9 8 14 14 H 1.48499 * 109.47349 * 90.00064 * 13 11 9 15 15 H 1.48506 * 109.47083 * 209.99860 * 13 11 9 16 16 H 1.48508 * 109.47053 * 329.99739 * 13 11 9 17 17 C 1.39030 * 119.99809 * 90.00127 * 7 6 4 18 18 C 1.39119 * 119.64218 * 185.00335 * 17 7 6 19 19 C 1.39507 * 118.92588 * 179.74602 * 18 17 7 20 20 C 1.48164 * 120.87955 * 180.23309 * 19 18 17 21 21 O 1.21521 * 119.99943 * 359.97438 * 20 19 18 22 22 N 1.34776 * 120.00015 * 180.02562 * 20 19 18 23 23 C 1.46505 * 119.99834 * 179.97438 * 22 20 19 24 24 C 1.40014 * 118.23908 * 0.25101 * 19 18 17 25 25 C 1.37942 * 119.17505 * 359.97438 * 24 19 18 26 26 N 1.31930 * 121.00261 * 0.02562 * 25 24 19 27 27 H 1.08997 * 109.47555 * 60.00196 * 1 2 3 28 28 H 1.09007 * 109.47225 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47720 * 300.00106 * 1 2 3 30 30 H 1.08990 * 109.47525 * 240.00265 * 2 1 3 31 31 H 1.08997 * 109.47059 * 119.99626 * 2 1 3 32 32 H 1.09002 * 109.46941 * 59.99812 * 6 4 3 33 33 H 1.09003 * 109.47409 * 300.00852 * 6 4 3 34 34 H 1.09008 * 109.46616 * 29.99931 * 8 7 6 35 35 H 1.08995 * 109.47337 * 149.99500 * 8 7 6 36 36 H 0.97004 * 119.99864 * 180.02562 * 12 11 9 37 37 H 1.08002 * 120.53976 * 0.02562 * 18 17 7 38 38 H 0.96992 * 120.00124 * 359.97438 * 22 20 19 39 39 H 1.09000 * 109.46828 * 299.99225 * 23 22 20 40 40 H 1.08999 * 109.47165 * 59.99519 * 23 22 20 41 41 H 1.09002 * 109.46559 * 179.97438 * 23 22 20 42 42 H 1.07999 * 120.41114 * 179.97438 * 24 19 18 43 43 H 1.08002 * 119.50312 * 179.97438 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0806 0.5868 0.0005 6 6 3.9206 2.9375 0.0000 7 7 5.3835 2.8610 0.0001 8 6 6.1150 2.8232 1.2689 9 6 6.4401 4.2290 1.7034 10 1 6.1329 5.0669 1.0951 11 6 7.1296 4.4457 2.8775 12 7 7.4137 5.6726 3.2564 13 14 7.6602 2.9965 3.9300 14 1 9.0120 2.5480 3.5096 15 1 7.6966 3.4079 5.3565 16 1 6.6939 1.8817 3.7608 17 6 6.0778 2.8242 -1.2039 18 6 7.4575 2.6464 -1.1974 19 6 8.1385 2.6064 -2.4143 20 6 9.6069 2.4140 -2.4581 21 8 10.2344 2.2889 -1.4249 22 7 10.2469 2.3786 -3.6437 23 6 11.6990 2.1889 -3.6869 24 6 7.3975 2.7533 -3.5932 25 6 6.0319 2.9304 -3.5115 26 7 5.4197 2.9633 -2.3433 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5137 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.5842 3.4702 0.8895 33 1 3.5850 3.4692 -0.8904 34 1 5.4998 2.3411 2.0287 35 1 7.0392 2.2602 1.1388 36 1 7.8992 5.8250 4.0823 37 1 7.9923 2.5365 -0.2655 38 1 9.7462 2.4788 -4.4683 39 1 12.1876 3.0007 -3.1480 40 1 11.9551 1.2375 -3.2208 41 1 12.0344 2.1872 -4.7240 42 1 7.8890 2.7283 -4.5545 43 1 5.4553 3.0447 -4.4175 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157162001.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:19 Heat of formation + Delta-G solvation = -90.166304 kcal Electronic energy + Delta-G solvation = -27133.577452 eV Core-core repulsion = 23178.751433 eV Total energy + Delta-G solvation = -3954.826019 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.81381 -41.34153 -40.21570 -38.11771 -37.16781 -35.80473 -34.80411 -33.60093 -32.78448 -31.57122 -30.85015 -28.18353 -27.93114 -25.00155 -24.87888 -24.00247 -22.85266 -22.25264 -21.19355 -19.42318 -19.28025 -18.69450 -18.03410 -17.82040 -17.23592 -17.09273 -16.67274 -16.57406 -16.37469 -16.15677 -15.57011 -15.28448 -15.06275 -14.98436 -14.69248 -14.49709 -14.31355 -13.91824 -13.68720 -13.53123 -13.38753 -13.19605 -13.04079 -12.81281 -12.71230 -12.50397 -12.43680 -12.30536 -11.82806 -11.64177 -11.52975 -11.45199 -11.01503 -10.87929 -10.72587 -10.44998 -10.20845 -8.53364 -8.37961 -6.43457 -0.21305 0.38516 1.16739 1.27389 1.32226 1.38447 1.48436 1.85215 2.03583 2.21895 2.25223 2.95234 3.00989 3.56197 3.63116 3.79901 3.93339 3.99981 4.10292 4.13990 4.19163 4.26693 4.33534 4.42618 4.49130 4.60159 4.61036 4.71520 4.81856 4.83696 4.90346 4.93457 4.95705 5.13860 5.18217 5.30236 5.35096 5.43264 5.58334 5.76512 6.23409 6.39573 6.44274 6.60303 6.76033 7.09940 7.10791 7.23005 8.77757 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.008229 B = 0.005068 C = 0.003481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3401.855392 B = 5523.201017 C = 8042.549863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.052 3.948 3 O -0.358 6.358 4 C 0.452 3.548 5 O -0.537 6.537 6 C 0.141 3.859 7 N -0.580 5.580 8 C 0.240 3.760 9 C -0.535 4.535 10 H 0.043 0.957 11 C 0.027 3.973 12 N -0.934 5.934 13 Si 0.927 3.073 14 H -0.275 1.275 15 H -0.270 1.270 16 H -0.249 1.249 17 C 0.400 3.600 18 C -0.200 4.200 19 C -0.064 4.064 20 C 0.552 3.448 21 O -0.579 6.579 22 N -0.706 5.706 23 C 0.082 3.918 24 C -0.194 4.194 25 C 0.145 3.855 26 N -0.546 5.546 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.127 0.873 33 H 0.139 0.861 34 H 0.037 0.963 35 H 0.023 0.977 36 H 0.270 0.730 37 H 0.110 0.890 38 H 0.422 0.578 39 H 0.047 0.953 40 H 0.051 0.949 41 H 0.125 0.875 42 H 0.184 0.816 43 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.262 -9.676 -18.306 21.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.022 4.022 3 O -0.274 6.274 4 C 0.294 3.706 5 O -0.426 6.426 6 C 0.015 3.985 7 N -0.291 5.291 8 C 0.118 3.882 9 C -0.574 4.574 10 H 0.061 0.939 11 C -0.173 4.173 12 N -0.573 5.573 13 Si 0.751 3.249 14 H -0.201 1.201 15 H -0.195 1.195 16 H -0.172 1.172 17 C 0.166 3.834 18 C -0.226 4.226 19 C -0.075 4.075 20 C 0.339 3.661 21 O -0.459 6.459 22 N -0.359 5.359 23 C -0.061 4.061 24 C -0.217 4.217 25 C -0.013 4.013 26 N -0.265 5.265 27 H 0.091 0.909 28 H 0.119 0.881 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.145 0.855 33 H 0.157 0.843 34 H 0.055 0.945 35 H 0.041 0.959 36 H 0.079 0.921 37 H 0.128 0.872 38 H 0.261 0.739 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.143 0.857 42 H 0.201 0.799 43 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -6.485 -9.861 -17.230 20.884 hybrid contribution 1.409 -0.487 0.945 1.765 sum -5.075 -10.348 -16.285 19.951 Atomic orbital electron populations 1.21810 0.89795 1.04405 1.03907 1.23284 0.97443 0.79407 1.02067 1.86514 1.23439 1.33669 1.83759 1.24933 0.80823 0.93721 0.71134 1.90621 1.61334 1.44043 1.46583 1.20896 0.80013 0.89744 1.07844 1.46123 1.04020 1.75806 1.03105 1.19420 0.92196 0.95706 0.80893 1.21491 1.36806 0.92149 1.06948 0.93853 1.25594 0.95039 0.98065 0.98566 1.70004 1.41104 1.21796 1.24399 0.86018 0.79682 0.80400 0.78830 1.20097 1.19476 1.17240 1.18249 0.87927 0.90572 0.86611 1.21510 0.94050 1.07762 0.99270 1.20112 0.93086 1.00040 0.94308 1.18515 0.87172 0.76194 0.84244 1.90781 1.68796 1.51008 1.35349 1.45513 1.09981 1.72752 1.07621 1.21786 0.78225 1.01151 1.04921 1.22261 0.95426 1.06085 0.97911 1.23170 0.92421 0.91046 0.94683 1.67051 1.41148 1.20326 0.97937 0.90875 0.88096 0.91248 0.91672 0.92084 0.85513 0.84338 0.94505 0.95914 0.92104 0.87172 0.73914 0.93375 0.93057 0.85665 0.79900 0.77582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 10.29 71.98 0.74 -1.42 16 2 C 0.05 1.21 6.19 71.98 0.45 1.65 16 3 O -0.36 -10.50 10.22 -51.36 -0.52 -11.03 16 4 C 0.45 16.06 8.03 71.23 0.57 16.63 16 5 O -0.54 -22.59 16.18 21.97 0.36 -22.23 16 6 C 0.14 5.07 6.06 85.63 0.52 5.58 16 7 N -0.58 -25.57 2.06 -712.67 -1.47 -27.04 16 8 C 0.24 12.05 4.07 85.63 0.35 12.40 16 9 C -0.54 -30.96 9.94 25.60 0.25 -30.70 16 10 H 0.04 2.77 8.06 -2.91 -0.02 2.74 16 11 C 0.03 1.60 5.47 84.65 0.46 2.06 16 12 N -0.93 -58.35 13.96 21.45 0.30 -58.06 16 13 Si 0.93 45.43 27.47 68.60 1.88 47.32 16 14 H -0.28 -13.69 7.11 99.48 0.71 -12.99 16 15 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 16 H -0.25 -11.46 6.54 99.48 0.65 -10.81 16 17 C 0.40 16.81 7.37 133.08 0.98 17.79 16 18 C -0.20 -8.74 8.84 22.79 0.20 -8.54 16 19 C -0.06 -2.20 5.90 -19.90 -0.12 -2.31 16 20 C 0.55 18.57 7.80 86.88 0.68 19.25 16 21 O -0.58 -25.82 16.44 -3.78 -0.06 -25.88 16 22 N -0.71 -14.57 5.67 -487.14 -2.76 -17.33 16 23 C 0.08 1.40 10.70 127.77 1.37 2.76 16 24 C -0.19 -4.45 9.61 22.63 0.22 -4.23 16 25 C 0.14 3.52 11.16 84.61 0.94 4.46 16 26 N -0.55 -18.74 9.04 -193.40 -1.75 -20.49 16 27 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.10 1.05 8.14 -2.38 -0.02 1.04 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.06 1.53 8.13 -2.39 -0.02 1.51 16 31 H 0.06 1.49 8.13 -2.39 -0.02 1.48 16 32 H 0.13 4.35 8.07 -2.39 -0.02 4.33 16 33 H 0.14 4.44 7.29 -2.39 -0.02 4.42 16 34 H 0.04 1.82 7.13 -2.38 -0.02 1.80 16 35 H 0.02 1.21 5.40 -2.39 -0.01 1.19 16 36 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 37 H 0.11 5.66 5.71 -2.91 -0.02 5.64 16 38 H 0.42 4.94 6.97 -92.71 -0.65 4.29 16 39 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.18 2.02 6.53 -2.91 -0.02 2.00 16 43 H 0.21 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -85.91 369.87 3.93 -81.98 By element: Atomic # 1 Polarization: 17.02 SS G_CDS: 0.34 Total: 17.36 kcal Atomic # 6 Polarization: 27.79 SS G_CDS: 7.61 Total: 35.40 kcal Atomic # 7 Polarization: -117.24 SS G_CDS: -5.68 Total: -122.92 kcal Atomic # 8 Polarization: -58.90 SS G_CDS: -0.23 Total: -59.14 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.88 Total: 47.32 kcal Total: -85.91 3.93 -81.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157162001.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.188 kcal (2) G-P(sol) polarization free energy of solvation -85.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds