Wall clock time and date at job start Tue Mar 31 2020 13:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45199 * 109.47354 * 2 1 4 4 C 1.34226 * 116.99932 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00082 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00014 * 179.97438 * 4 3 2 7 7 N 1.46896 * 109.47221 * 180.02562 * 6 4 3 8 8 C 1.46898 * 111.00481 * 72.41311 * 7 6 4 9 9 C 1.50699 * 109.47205 * 193.95722 * 8 7 6 10 10 H 1.07993 * 120.00161 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99843 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00076 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99922 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47454 * 89.99647 * 13 11 9 15 15 H 1.48504 * 109.47109 * 209.99842 * 13 11 9 16 16 H 1.48500 * 109.46987 * 329.99649 * 13 11 9 17 17 C 1.38558 * 111.00087 * 196.36734 * 7 6 4 18 18 N 1.32345 * 119.81360 * 294.41793 * 17 7 6 19 19 C 1.31928 * 121.77495 * 179.97438 * 18 17 7 20 20 C 1.38278 * 121.20618 * 0.02562 * 19 18 17 21 21 C 1.50697 * 120.25344 * 179.97438 * 20 19 18 22 22 C 1.38446 * 119.49071 * 0.02562 * 20 19 18 23 23 C 1.39868 * 118.36941 * 359.97438 * 22 20 19 24 24 C 1.47401 * 120.60714 * 180.02562 * 23 22 20 25 25 N 1.29441 * 120.00559 * 185.18824 * 24 23 22 26 26 O 1.41594 * 120.00700 * 180.02562 * 25 24 23 27 27 H 1.08996 * 109.46663 * 60.00406 * 1 2 3 28 28 H 1.08997 * 109.47071 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46737 * 300.00633 * 1 2 3 30 30 H 1.08999 * 109.46737 * 239.99367 * 2 1 3 31 31 H 1.09005 * 109.46884 * 119.99661 * 2 1 3 32 32 H 1.09000 * 109.47389 * 59.99371 * 6 4 3 33 33 H 1.09001 * 109.46858 * 299.99626 * 6 4 3 34 34 H 1.09008 * 109.47035 * 313.95307 * 8 7 6 35 35 H 1.08998 * 109.47689 * 73.94995 * 8 7 6 36 36 H 0.96998 * 119.99701 * 180.02562 * 12 11 9 37 37 H 1.07999 * 119.39424 * 179.72381 * 19 18 17 38 38 H 1.09001 * 109.47062 * 89.99587 * 21 20 19 39 39 H 1.08998 * 109.46911 * 209.99688 * 21 20 19 40 40 H 1.08998 * 109.47388 * 329.99619 * 21 20 19 41 41 H 1.08003 * 120.81343 * 179.97438 * 22 20 19 42 42 H 1.08007 * 119.99839 * 5.19468 * 24 23 22 43 43 H 0.96700 * 114.00714 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9209 2.9372 -0.0012 7 7 5.3878 2.8603 -0.0023 8 6 5.8909 2.4188 -1.3099 9 6 7.3396 2.0233 -1.1833 10 1 7.8370 2.0934 -0.2273 11 6 8.0301 1.5721 -2.2882 12 7 7.4243 1.4862 -3.4523 13 14 9.8259 1.0826 -2.1315 14 1 9.9181 -0.3604 -1.7933 15 1 10.5219 1.3347 -3.4189 16 1 10.4656 1.8844 -1.0577 17 6 5.9490 4.0738 0.3616 18 7 5.7962 5.1303 -0.4205 19 6 6.3133 6.3041 -0.1115 20 6 7.0423 6.4824 1.0498 21 6 7.6239 7.8325 1.3814 22 6 7.2347 5.4109 1.9051 23 6 6.6779 4.1755 1.5584 24 6 6.8518 3.0019 2.4331 25 7 6.4189 1.8424 2.0543 26 8 6.5854 0.7151 2.8948 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 3.5852 3.4697 0.8887 33 1 3.5847 3.4691 -0.8912 34 1 5.3094 1.5630 -1.6529 35 1 5.7979 3.2328 -2.0288 36 1 7.9100 1.1684 -4.2295 37 1 6.1686 7.1397 -0.7803 38 1 6.9027 8.4057 1.9640 39 1 8.5377 7.7020 1.9611 40 1 7.8520 8.3664 0.4589 41 1 7.8009 5.5260 2.8176 42 1 7.3404 3.1096 3.3904 43 1 6.2309 -0.1058 2.5268 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157162126.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:04 Heat of formation + Delta-G solvation = -12.148293 kcal Electronic energy + Delta-G solvation = -27999.436598 eV Core-core repulsion = 24047.993693 eV Total energy + Delta-G solvation = -3951.442905 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.34737 -39.72354 -36.86901 -36.27449 -35.60893 -33.48724 -32.82924 -32.28233 -31.58262 -30.07990 -28.33214 -27.11621 -25.05854 -23.83631 -23.02651 -22.87495 -21.29057 -20.17203 -19.59052 -17.55310 -17.34092 -16.58740 -16.18965 -16.08233 -15.73537 -15.58391 -14.88801 -14.75673 -14.30174 -14.11393 -14.02491 -13.66144 -13.35353 -13.09900 -12.97940 -12.78999 -12.67652 -12.46353 -12.28993 -12.16663 -11.97309 -11.66537 -11.62128 -11.40826 -11.08974 -10.66329 -10.60595 -10.28709 -10.19497 -9.94522 -9.77509 -9.35727 -9.19090 -9.08912 -8.94520 -8.33012 -7.96819 -7.49923 -5.92435 -3.89903 1.11664 1.54367 2.84851 2.96276 2.97982 3.37318 3.42441 3.46334 3.56720 4.18789 4.38455 4.58278 4.89635 4.97631 5.01974 5.04005 5.08040 5.20153 5.24382 5.29933 5.38918 5.45103 5.49481 5.61412 5.68957 5.79109 5.80791 5.84127 5.89469 5.95879 5.99283 6.13352 6.25155 6.47857 6.77470 6.86226 7.17438 7.22928 7.44123 7.78476 8.12707 8.19981 8.30111 8.39230 8.41523 8.55315 9.14540 9.70763 11.19150 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.008391 B = 0.005815 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3335.914289 B = 4814.101846 C = 6293.677594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 O -0.371 6.371 4 C 0.457 3.543 5 O -0.461 6.461 6 C 0.077 3.923 7 N -0.456 5.456 8 C 0.200 3.800 9 C -0.487 4.487 10 H 0.061 0.939 11 C 0.055 3.945 12 N -0.899 5.899 13 Si 0.893 3.107 14 H -0.281 1.281 15 H -0.288 1.288 16 H -0.277 1.277 17 C 0.359 3.641 18 N -0.504 5.504 19 C 0.123 3.877 20 C -0.160 4.160 21 C -0.102 4.102 22 C -0.053 4.053 23 C -0.072 4.072 24 C 0.101 3.899 25 N -0.217 5.217 26 O -0.435 6.435 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.043 0.957 35 H 0.010 0.990 36 H 0.259 0.741 37 H 0.149 0.851 38 H 0.067 0.933 39 H 0.065 0.935 40 H 0.067 0.933 41 H 0.135 0.865 42 H 0.110 0.890 43 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.293 7.484 11.059 15.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.011 4.011 3 O -0.290 6.290 4 C 0.297 3.703 5 O -0.343 6.343 6 C -0.052 4.052 7 N -0.181 5.181 8 C 0.077 3.923 9 C -0.526 4.526 10 H 0.079 0.921 11 C -0.145 4.145 12 N -0.540 5.540 13 Si 0.722 3.278 14 H -0.207 1.207 15 H -0.214 1.214 16 H -0.202 1.202 17 C 0.129 3.871 18 N -0.215 5.215 19 C -0.038 4.038 20 C -0.162 4.162 21 C -0.159 4.159 22 C -0.081 4.081 23 C -0.077 4.077 24 C -0.111 4.111 25 N 0.044 4.956 26 O -0.344 6.344 27 H 0.084 0.916 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.113 0.887 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.028 0.972 36 H 0.069 0.931 37 H 0.167 0.833 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.086 0.914 41 H 0.153 0.847 42 H 0.128 0.872 43 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -8.564 6.440 10.144 14.755 hybrid contribution 1.623 -0.209 0.502 1.711 sum -6.941 6.231 10.645 14.154 Atomic orbital electron populations 1.21783 0.93185 1.02531 1.03221 1.22886 0.94759 0.80954 1.02481 1.86461 1.25487 1.31791 1.85253 1.23516 0.79967 0.93039 0.73798 1.90719 1.59584 1.42208 1.41814 1.21331 0.90055 0.90331 1.03466 1.59936 1.01595 1.19952 1.36568 1.19951 0.96395 0.95500 0.80468 1.21000 0.94605 1.42043 0.94931 0.92066 1.24897 0.98134 0.96221 0.95280 1.69953 1.36473 1.47817 0.99732 0.86570 0.85275 0.78897 0.77080 1.20747 1.21396 1.20161 1.19848 0.91180 0.87944 0.88140 1.67884 1.21797 0.99882 1.31907 1.22500 0.92814 0.94443 0.94025 1.20653 1.01888 0.96733 0.96963 1.20624 1.00319 0.92869 1.02108 1.21345 0.97002 0.90711 0.99026 1.19037 1.01340 0.92054 0.95272 1.23815 0.99103 0.91043 0.97094 1.77737 1.11245 0.93916 1.12664 1.88223 1.82628 1.18899 1.44636 0.91606 0.90624 0.91780 0.91343 0.91594 0.88681 0.90379 0.93941 0.97187 0.93141 0.83330 0.91411 0.91635 0.91406 0.84683 0.87231 0.74454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.29 37.16 0.38 -1.08 16 2 C 0.06 0.85 6.19 37.16 0.23 1.08 16 3 O -0.37 -6.08 10.22 -39.25 -0.40 -6.48 16 4 C 0.46 8.82 7.56 36.00 0.27 9.09 16 5 O -0.46 -10.36 14.75 -18.75 -0.28 -10.64 16 6 C 0.08 1.45 5.40 -4.98 -0.03 1.42 16 7 N -0.46 -10.06 1.85 -175.65 -0.33 -10.39 16 8 C 0.20 5.37 4.25 -4.98 -0.02 5.35 16 9 C -0.49 -14.19 8.80 -34.44 -0.30 -14.50 16 10 H 0.06 1.81 7.53 -52.49 -0.40 1.41 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 12 N -0.90 -27.71 13.29 55.43 0.74 -26.98 16 13 Si 0.89 22.95 29.54 -169.99 -5.02 17.93 16 14 H -0.28 -7.19 7.11 56.52 0.40 -6.78 16 15 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 16 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 17 C 0.36 7.33 4.63 -154.98 -0.72 6.62 16 18 N -0.50 -9.84 9.48 -12.16 -0.12 -9.95 16 19 C 0.12 1.89 10.83 -17.50 -0.19 1.70 16 20 C -0.16 -2.11 5.89 -104.53 -0.62 -2.73 16 21 C -0.10 -0.92 10.03 36.00 0.36 -0.56 16 22 C -0.05 -0.74 9.60 -38.90 -0.37 -1.11 16 23 C -0.07 -1.29 5.90 -104.71 -0.62 -1.91 16 24 C 0.10 1.82 10.91 -14.83 -0.16 1.66 16 25 N -0.22 -4.44 9.67 32.09 0.31 -4.13 16 26 O -0.43 -8.01 14.95 -11.47 -0.17 -8.18 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.97 8.13 -51.93 -0.42 0.55 16 31 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 32 H 0.10 1.56 7.96 -51.93 -0.41 1.14 16 33 H 0.08 1.45 8.05 -51.93 -0.42 1.03 16 34 H 0.04 1.25 6.41 -51.92 -0.33 0.92 16 35 H 0.01 0.30 7.52 -51.93 -0.39 -0.09 16 36 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.15 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.06 0.53 8.09 -51.93 -0.42 0.11 16 40 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 41 H 0.14 1.43 8.06 -52.48 -0.42 1.00 16 42 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 43 H 0.41 6.37 9.28 45.56 0.42 6.79 16 LS Contribution 375.06 15.07 5.65 5.65 Total: -1.00 -36.11 375.06 -6.80 -42.90 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: -5.31 Total: 3.69 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -1.88 Total: 6.58 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: 0.61 Total: -51.45 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.85 Total: -25.30 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -36.11 -6.80 -42.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157162126.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.756 kcal (2) G-P(sol) polarization free energy of solvation -36.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds