Wall clock time and date at job start Tue Mar 31 2020 13:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.45199 * 109.47354 * 2 1 4 4 C 1.34226 * 116.99932 * 180.02562 * 3 2 1 5 5 O 1.20824 * 120.00082 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00014 * 179.97438 * 4 3 2 7 7 N 1.46896 * 109.47221 * 180.02562 * 6 4 3 8 8 C 1.46898 * 111.00481 * 72.41311 * 7 6 4 9 9 C 1.50699 * 109.47205 * 193.95722 * 8 7 6 10 10 H 1.07993 * 120.00161 * 359.97438 * 9 8 7 11 11 C 1.37878 * 119.99843 * 179.97438 * 9 8 7 12 12 N 1.31516 * 120.00076 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 119.99922 * 179.97438 * 11 9 8 14 14 H 1.48498 * 109.47454 * 89.99647 * 13 11 9 15 15 H 1.48504 * 109.47109 * 209.99842 * 13 11 9 16 16 H 1.48500 * 109.46987 * 329.99649 * 13 11 9 17 17 C 1.38558 * 111.00087 * 196.36734 * 7 6 4 18 18 N 1.32345 * 119.81360 * 294.41793 * 17 7 6 19 19 C 1.31928 * 121.77495 * 179.97438 * 18 17 7 20 20 C 1.38278 * 121.20618 * 0.02562 * 19 18 17 21 21 C 1.50697 * 120.25344 * 179.97438 * 20 19 18 22 22 C 1.38446 * 119.49071 * 0.02562 * 20 19 18 23 23 C 1.39868 * 118.36941 * 359.97438 * 22 20 19 24 24 C 1.47401 * 120.60714 * 180.02562 * 23 22 20 25 25 N 1.29441 * 120.00559 * 185.18824 * 24 23 22 26 26 O 1.41594 * 120.00700 * 180.02562 * 25 24 23 27 27 H 1.08996 * 109.46663 * 60.00406 * 1 2 3 28 28 H 1.08997 * 109.47071 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46737 * 300.00633 * 1 2 3 30 30 H 1.08999 * 109.46737 * 239.99367 * 2 1 3 31 31 H 1.09005 * 109.46884 * 119.99661 * 2 1 3 32 32 H 1.09000 * 109.47389 * 59.99371 * 6 4 3 33 33 H 1.09001 * 109.46858 * 299.99626 * 6 4 3 34 34 H 1.09008 * 109.47035 * 313.95307 * 8 7 6 35 35 H 1.08998 * 109.47689 * 73.94995 * 8 7 6 36 36 H 0.96998 * 119.99701 * 180.02562 * 12 11 9 37 37 H 1.07999 * 119.39424 * 179.72381 * 19 18 17 38 38 H 1.09001 * 109.47062 * 89.99587 * 21 20 19 39 39 H 1.08998 * 109.46911 * 209.99688 * 21 20 19 40 40 H 1.08998 * 109.47388 * 329.99619 * 21 20 19 41 41 H 1.08003 * 120.81343 * 179.97438 * 22 20 19 42 42 H 1.08007 * 119.99839 * 5.19468 * 24 23 22 43 43 H 0.96700 * 114.00714 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5865 -0.0005 6 6 3.9209 2.9372 -0.0012 7 7 5.3878 2.8603 -0.0023 8 6 5.8909 2.4188 -1.3099 9 6 7.3396 2.0233 -1.1833 10 1 7.8370 2.0934 -0.2273 11 6 8.0301 1.5721 -2.2882 12 7 7.4243 1.4862 -3.4523 13 14 9.8259 1.0826 -2.1315 14 1 9.9181 -0.3604 -1.7933 15 1 10.5219 1.3347 -3.4189 16 1 10.4656 1.8844 -1.0577 17 6 5.9490 4.0738 0.3616 18 7 5.7962 5.1303 -0.4205 19 6 6.3133 6.3041 -0.1115 20 6 7.0423 6.4824 1.0498 21 6 7.6239 7.8325 1.3814 22 6 7.2347 5.4109 1.9051 23 6 6.6779 4.1755 1.5584 24 6 6.8518 3.0019 2.4331 25 7 6.4189 1.8424 2.0543 26 8 6.5854 0.7151 2.8948 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 3.5852 3.4697 0.8887 33 1 3.5847 3.4691 -0.8912 34 1 5.3094 1.5630 -1.6529 35 1 5.7979 3.2328 -2.0288 36 1 7.9100 1.1684 -4.2295 37 1 6.1686 7.1397 -0.7803 38 1 6.9027 8.4057 1.9640 39 1 8.5377 7.7020 1.9611 40 1 7.8520 8.3664 0.4589 41 1 7.8009 5.5260 2.8176 42 1 7.3404 3.1096 3.3904 43 1 6.2309 -0.1058 2.5268 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157162126.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:12:03 Heat of formation + Delta-G solvation = -36.779227 kcal Electronic energy + Delta-G solvation = -28000.504675 eV Core-core repulsion = 24047.993693 eV Total energy + Delta-G solvation = -3952.510982 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 321.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.76424 -41.11448 -38.32144 -37.67631 -37.12711 -34.85633 -34.75709 -33.71924 -32.65908 -31.35833 -30.12095 -28.58795 -26.51397 -25.11386 -24.63874 -24.13197 -22.78318 -21.65857 -20.87395 -18.97790 -18.94050 -18.38203 -17.63885 -17.50555 -17.23393 -17.14590 -16.57176 -16.15295 -15.85078 -15.54844 -15.29057 -14.86610 -14.70037 -14.55528 -14.35804 -14.05992 -13.93964 -13.70812 -13.58443 -13.40003 -13.23202 -13.18075 -12.84159 -12.64709 -12.63806 -12.48884 -12.47555 -12.07206 -11.61644 -11.50632 -11.44904 -11.23985 -10.69953 -10.64720 -10.40854 -10.15634 -9.32360 -9.15183 -8.18298 -6.23092 -0.17290 0.35070 1.30571 1.31678 1.34745 1.44024 1.60942 1.65578 2.25952 2.36880 2.88614 3.01306 3.16078 3.59633 3.80428 3.92550 3.99138 4.02506 4.06963 4.12939 4.15807 4.28517 4.32071 4.36067 4.45249 4.83235 4.85302 4.92997 4.93661 4.98633 5.00984 5.10704 5.14309 5.28541 5.32020 5.41900 5.47847 5.62428 5.74482 5.92558 5.99536 6.35095 6.56391 6.87875 6.92229 6.98903 7.14176 7.41945 8.93750 Molecular weight = 321.15amu Principal moments of inertia in cm(-1) A = 0.008391 B = 0.005815 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3335.914289 B = 4814.101846 C = 6293.677594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.053 3.947 3 O -0.366 6.366 4 C 0.461 3.539 5 O -0.499 6.499 6 C 0.076 3.924 7 N -0.454 5.454 8 C 0.227 3.773 9 C -0.491 4.491 10 H 0.055 0.945 11 C -0.001 4.001 12 N -0.936 5.936 13 Si 0.959 3.041 14 H -0.278 1.278 15 H -0.279 1.279 16 H -0.269 1.269 17 C 0.318 3.682 18 N -0.540 5.540 19 C 0.108 3.892 20 C -0.141 4.141 21 C -0.099 4.099 22 C -0.043 4.043 23 C -0.090 4.090 24 C 0.108 3.892 25 N -0.266 5.266 26 O -0.437 6.437 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.121 0.879 33 H 0.075 0.925 34 H 0.005 0.995 35 H -0.023 1.023 36 H 0.261 0.739 37 H 0.175 0.825 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.179 0.821 42 H 0.144 0.856 43 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.340 9.594 13.195 17.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.020 4.020 3 O -0.284 6.284 4 C 0.302 3.698 5 O -0.385 6.385 6 C -0.052 4.052 7 N -0.178 5.178 8 C 0.102 3.898 9 C -0.530 4.530 10 H 0.073 0.927 11 C -0.198 4.198 12 N -0.577 5.577 13 Si 0.785 3.215 14 H -0.204 1.204 15 H -0.204 1.204 16 H -0.193 1.193 17 C 0.089 3.911 18 N -0.251 5.251 19 C -0.051 4.051 20 C -0.143 4.143 21 C -0.156 4.156 22 C -0.070 4.070 23 C -0.095 4.095 24 C -0.103 4.103 25 N -0.006 5.006 26 O -0.346 6.346 27 H 0.086 0.914 28 H 0.120 0.880 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.138 0.862 33 H 0.093 0.907 34 H 0.023 0.977 35 H -0.006 1.006 36 H 0.070 0.930 37 H 0.192 0.808 38 H 0.109 0.891 39 H 0.101 0.899 40 H 0.096 0.904 41 H 0.196 0.804 42 H 0.161 0.839 43 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -7.640 8.567 12.305 16.827 hybrid contribution 1.252 -0.704 -0.110 1.441 sum -6.387 7.863 12.195 15.854 Atomic orbital electron populations 1.21801 0.89733 1.04420 1.03779 1.23248 0.97380 0.79354 1.02032 1.86458 1.23698 1.33721 1.84529 1.23628 0.80654 0.92764 0.72732 1.90694 1.60685 1.43299 1.43798 1.21406 0.88966 0.90436 1.04400 1.59704 1.02912 1.22067 1.33072 1.19335 0.95179 0.92790 0.82475 1.21216 0.95663 1.41515 0.94557 0.92657 1.25776 1.02672 0.96330 0.94975 1.70087 1.38261 1.48892 1.00476 0.85540 0.79983 0.78521 0.77503 1.20425 1.20388 1.19313 1.19925 0.93604 0.87605 0.89987 1.67764 1.23375 1.01117 1.32889 1.23087 0.92737 0.93763 0.95559 1.21146 0.99459 0.98554 0.95159 1.20742 1.01314 0.90252 1.03293 1.21850 0.95809 0.89033 1.00336 1.19286 1.01793 0.93662 0.94785 1.24220 0.97697 0.90347 0.98016 1.77721 1.13560 0.95114 1.14204 1.88166 1.82897 1.19045 1.44540 0.91422 0.88029 0.90796 0.92602 0.91399 0.86152 0.90695 0.97667 1.00559 0.93026 0.80843 0.89118 0.89898 0.90406 0.80390 0.83947 0.73738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.56 10.29 71.98 0.74 -1.82 16 2 C 0.05 1.47 6.19 71.98 0.45 1.92 16 3 O -0.37 -12.36 10.22 -51.38 -0.53 -12.89 16 4 C 0.46 18.75 7.56 71.24 0.54 19.29 16 5 O -0.50 -23.89 14.75 21.97 0.32 -23.56 16 6 C 0.08 3.02 5.40 85.56 0.46 3.48 16 7 N -0.45 -20.93 1.85 -709.62 -1.31 -22.25 16 8 C 0.23 12.95 4.25 85.56 0.36 13.31 16 9 C -0.49 -29.64 8.80 25.60 0.23 -29.41 16 10 H 0.06 3.35 7.53 -2.91 -0.02 3.33 16 11 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 12 N -0.94 -59.70 13.29 21.45 0.28 -59.42 16 13 Si 0.96 47.79 29.54 68.60 2.03 49.82 16 14 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 15 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 16 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 17 C 0.32 13.18 4.63 133.57 0.62 13.80 16 18 N -0.54 -21.34 9.48 -192.38 -1.82 -23.16 16 19 C 0.11 3.17 10.83 84.69 0.92 4.08 16 20 C -0.14 -3.23 5.89 -19.81 -0.12 -3.35 16 21 C -0.10 -1.28 10.03 71.24 0.71 -0.57 16 22 C -0.04 -1.05 9.60 22.71 0.22 -0.83 16 23 C -0.09 -3.13 5.90 -19.92 -0.12 -3.25 16 24 C 0.11 3.79 10.91 87.46 0.95 4.74 16 25 N -0.27 -11.05 9.67 -52.38 -0.51 -11.56 16 26 O -0.44 -16.27 14.95 -38.77 -0.58 -16.85 16 27 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.06 1.67 8.13 -2.39 -0.02 1.65 16 31 H 0.07 1.83 8.13 -2.38 -0.02 1.81 16 32 H 0.12 4.06 7.96 -2.39 -0.02 4.04 16 33 H 0.08 2.98 8.05 -2.39 -0.02 2.96 16 34 H 0.01 0.34 6.41 -2.38 -0.02 0.32 16 35 H -0.02 -1.45 7.52 -2.39 -0.02 -1.47 16 36 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 37 H 0.17 3.95 8.06 -2.91 -0.02 3.93 16 38 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.08 0.87 8.09 -2.39 -0.02 0.85 16 40 H 0.08 0.92 8.09 -2.39 -0.02 0.90 16 41 H 0.18 2.77 8.06 -2.91 -0.02 2.75 16 42 H 0.14 3.86 8.06 -2.91 -0.02 3.83 16 43 H 0.41 13.49 9.28 -74.06 -0.69 12.81 16 Total: -1.00 -83.24 375.06 4.65 -78.59 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.34 Total: 19.44 kcal Atomic # 6 Polarization: 15.40 SS G_CDS: 6.43 Total: 21.83 kcal Atomic # 7 Polarization: -113.02 SS G_CDS: -3.36 Total: -116.38 kcal Atomic # 8 Polarization: -52.52 SS G_CDS: -0.78 Total: -53.30 kcal Atomic # 14 Polarization: 47.79 SS G_CDS: 2.03 Total: 49.82 kcal Total: -83.24 4.65 -78.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157162126.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.808 kcal (2) G-P(sol) polarization free energy of solvation -83.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds